CDH1 Gene
protein-coding GIFtS : 76
GCID: GC16 P068771
cadherin 1, type 1, E-cadherin (epithelial) (Previous symbol: UVO )
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Aliasesfor CDH1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cadherin 1, Type 1, E-Cadherin (Epithelial) 1 2 Arc-12 UVO1 2 3 5 E-Cadherin2 CD3241 2 Cadherin 1, E-Cadherin (Epithelial)2 Uvomorulin3 Cadherin-11 Epithelial Cadherin2 3 Calcium-Dependent Adhesion Protein, Epithelial2 CDHE2 3 Cell-CAM 120/802 CAM 120/802 3 E-Cadherin2 ECAD2 5 Uvomorulin3 LCAM2 5 CD324 Antigen3
Export aliases for CDH1 gene to outside databases Previous GC identifers: GC16P059456 GC16P069148 GC16P068506 GC16P068547 GC16P067328 GC16P054643
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Summariesfor CDH1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CDH1 : This gene is a classical cadherin from the cadherin superfamily. The encoded protein is a calcium dependent cell-cell adhesion glycoprotein comprised of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. Mutations in this gene are correlated with gastric, breast, colorectal, thyroid and ovarian cancer. Loss of function is thought to contribute to progression in cancer by increasing proliferation, invasion, and/or metastasis. The ectodomain of this protein mediates bacterial adhesion to mammalian cells and the cytoplasmic domain is required for internalization. Identified transcript variants arise from mutation at consensus splice sites. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830 Function : Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in ahomophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. CDH1 is involved in mechanisms regulating cell-cell adhesions, mobility and proliferation of epithelial cells. Has a potent invasive suppressor role. It is a ligand for integrin alpha-E/beta-7 Function : E-Cad/CTF2 promotes non-amyloidogenic degradation of Abeta precursors. Has a strong inhibitory effect on APPC99 and C83 production Gene Wiki entry for CDH1
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Genomic Viewsfor CDH1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010498.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CDH1 gene promoter: AP-2alpha isoform 3 p53 HNF-4alpha2 AP-2alpha isoform 2 HNF-4alpha1 COUP-TF AP-2alpha isoform 4 AP-2alpha AP-2alphaA Other transcription factors Search SABiosciences Chromatin IP Primers for CDH1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CDH1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q22.1 Ensembl cytogenetic band: 16q22.1 HGNC cytogenetic band: 16q22.1 CDH1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P068771: view genomic region
(about GC identifiers )
Start:
68,771,128 bp from pter
End:
68,869,445 bp from pter
Size:
98,318 bases
Orientation:
plus strand
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Proteinsfor CDH1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830 (See
protein sequence )Recommended Name: Cadherin-1 precursor Size : 882 amino acids; 97456 Da
Subunit : Homodimer; disulfide-linked. Component of an E-cadherin/ catenin adhesion complex composed of at leastE-cadherin/CDH1, beta-catenin/CTNNB1 or gamma-catenin/JUP, and potentially alpha-catenin/CTNNA1; the complex is located to adherens junctions. The stable association of CTNNA1 is controversial as CTNNA1 was shown not to bind to F-actin when assembled in the complex. Alternatively, the CTNNA1-containing complex may be linked to F-actin by other proteins such as LIMA1. Interaction with PSEN1, cleaves CDH1 resulting in the disassociation of cadherin-based adherens junctions (CAJs). Interacts with AJAP1, CTNND1 and DLGAP5 (By similarity). Interacts with TBC1D2. Interacts with LIMA1. Interacts with CAV1. Interacts with the TRPV4 and CTNNB1 complex (By similarity). Interacts with PIP5K1C. Interacts with RAB8B (By similarity). Interacts with DDR1; this stabilizes CDH1 at the cell surface and inhibits its internalization
Subcellular location : Cell junction. Cell membrane; Single-pass type I membrane protein. Endosome. Golgi apparatus,trans-Golgi network. Note=Colocalizes with DLGAP5 at sites of cell-cell contact in intestinal epithelial cells. Anchored to actin microfilaments through association with alpha-, beta- and gamma-catenin. Sequential proteolysis induced by apoptosis or calcium influx, results in translocation from sites of cell-cell contact to the cytoplasm. Colocalizes with RAB11A endosomes during its transport from the Golgi apparatus to the plasma membrane
Sequence caution : Sequence=AAA61259.1; Type=Frameshift; Positions=16, 22, 25, 28, 31, 34, 52, 67, 73, 76, 94, 102, 633,636;
6/12 PDB 3D structures from and Proteopedia for CDH1 (see all 12 ):1O6S (3D)
  2O72 (3D)
  2OMT (3D)
  2OMU (3D)
  2OMV (3D)
  2OMX (3D)
 
Secondary accessions : A8K1U7 Q13799 Q14216 Q15855 Q16194 Q4PJ14Explore the universe of human proteins at neXtProt for CDH1: NX_P12830 Post-translational modifications:
During apoptosis or with calcium influx, cleaved by a membrane-bound metalloproteinase (ADAM10), PS1/gamma-secretase and caspase-3 to produce fragments of about 38 kDa (E-CAD/CTF1), 33 kDa (E-CAD/CTF2) and 29 kDa (E-CAD/CTF3), respectively. Processing by the metalloproteinase, induced by calcium influx, causes disruption of cell-cell adhesion and the subsequent release of beta-catenin into the cytoplasm. The residual membrane-tethered cleavage product is rapidly degraded via an intracellular proteolytic pathway. Cleavage by caspase-3 releases the cytoplasmic tail resulting in disintegration of the actin microfilament system. The gamma-secretase-mediated cleavage promotes disassembly of adherens junctions1
N-glycosylation at Asn-637 is essential for expression, folding and trafficking1
Ubiquitinated by a SCF complex containing SKP2, which requires prior phosphorylation by CK1/CSNK1A1. Ubiquitinated by CBLL1/HAKAI, requires prior phosphorylation at Tyr-7541
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P12830 CDH1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_004351.1 ENSEMBL proteins: ENSP00000261769 ENSP00000454782 ENSP00000414946 ENSP00000458139 ENSP00000463170 Reactome Protein details: P12830 Human Recombinant Protein Products: Gene Ontology (GO): 5/25 cellular component terms (GO ID links to tree view) (see all 25 ): About this table
CDH1 for ontologies About GeneDecksing CDH1 Antibody Products: Assay Products for CDH1:
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Protein
Domains / Familiesfor CDH1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CDH1 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P12830 ProtoNet protein and cluster: P12830
2 Blocks protein families : IPB000233 Cadherin cytoplasmic region IPB002126 Cadherin UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830 Domain : Three calcium ions are usually bound at the interface of each cadherin domain and rigidify the connections,imparting a strong curvature to the full-length ectodomain Similarity : Contains 5 cadherin domains
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Functionfor CDH1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830 Function : Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in ahomophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. CDH1 is involved in mechanisms regulating cell-cell adhesions, mobility and proliferation of epithelial cells. Has a potent invasive suppressor role. It is a ligand for integrin alpha-E/beta-7 Function : E-Cad/CTF2 promotes non-amyloidogenic degradation of Abeta precursors. Has a strong inhibitory effect on APPC99 and C83 production Induction : Expression is repressed by MACROD1
Genatlas biochemistry entry for CDH1 : cadherin 1,E-cadherin,transmembrane glycoprotein major adhesion receptor component of adherens junction,expressed in epithelial cell,downregulator of cell growth,complexing with CTNNB1,mutated in signet ring cell carcinoma of stomach (with poor clinical outcome) in colorectal cancer and in lobular breast cancer (see TSG16A) not in adenocarcinoma of the oesophagus,deleted during development of carcinomas (see TSG16H and TSG16A),involved in metaplasia of ovarian surface epithelium and in ovarian neoplastic progression Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CDH1 (NM_004360 ) Sino Biological Human cDNA Clone for CDH1 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CDH1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CDH1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDH1
Gene Ontology (GO): 5/10 molecular function terms (GO ID links to tree view) (see all 10 ): About this table
CDH1 for ontologies About GeneDecksing 3 GenomeRNAi human phenotypes for CDH1 :Animal Models: Mouse knock-outs for CDH1: Cdh1 tm1Cbm Cdh1 tm3.2Kem Cdh1 tm2.1Kem 14 MGI mutant phenotypes (inferred from 16 alleles ) (MGI details for Cdh1) :
CDH1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor CDH1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/51 super-pathways (see all 51 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Cell-cell junction organization 2 Rho Family GTPases 3 Immune System 4 Apoptotic cleavage of cellular proteins 5 Pathogenic Escherichia coli infection
Pathway sources See GeneCards unified pathways Show all pathways 3 EMD Millipore Pathways for CDH1 5/17 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CDH1 (see all 17 )2
Cell Signaling Technology (CST) Pathways for CDH1 2 GeneGo (Thomson Reuters) Pathways for CDH1 5/17 BioSystems Pathways for CDH1 (see all 17 ) 5/13
Reactome Pathways for CDH1 (see all 13 )5/9
Kegg Pathways (Kegg details for CDH1) (see all 9 ):
CDH1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CDH1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/140 Interacting proteins for CDH1 (P12830 1 , 2 , 3 ENSP00000261769 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 140 )Interactant Interaction Details GeneCard External ID(s) CTNNA1 P35221 2 , 3 , ENSP00000304669 4 MINT-7010191 I2D:
score=6 STRING: ENSP00000304669 CTNND1 O60716 2 , 3 , ENSP00000382004 4 MINT-8385411 I2D:
score=5 STRING: ENSP00000382004 PSEN1 P49768 2 , 3 , ENSP00000326366 4 MINT-49819 I2D:
score=4 STRING: ENSP00000326366 PPP1CA P62136 1 , 3 , ENSP00000326031 4 EBI-727477,EBI-2623163 I2D:
score=2 STRING: ENSP00000326031 PRKD1 Q15139 1 , 3 , ENSP00000333568 4 EBI-727477,EBI-1181072 I2D:
score=1 STRING: ENSP00000333568
About this table Gene Ontology (GO): 5/34 biological process terms (GO ID links to tree view) (see all 34 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001701 in utero embryonic development
-- -- GO:0001829 trophectodermal cell differentiation
IEA -- GO:0006915 apoptotic process
TAS -- GO:0006921 cellular component disassembly involved in execution phase of apoptosis
TAS -- GO:0007156 homophilic cell adhesion
NAS 16338932
CDH1 for ontologies About GeneDecksing
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Drugs & Compoundsfor CDH1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
CDH1 for compounds About GeneDecksing Browse Tocris compounds for CDH1 1 HMDB Compound for CDH1 About this table 10/142 Novoseek chemical compound relationships for CDH1 gene (see all 142 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
matrigel
67.8
20
1793731 (2), 7881109 (1), 19497979 (1), 19293150 (1) (see all 15 )
tyrosine
57.3
214
17087658 (5), 15662113 (4), 11710913 (4), 14675348 (4) (see all 99 )
paraffin
56.9
47
10070338 (1), 12657131 (1), 12800081 (1), 16575127 (1) (see all 45 )
5-aza-2'deoxycytidine
56.8
30
15015578 (3), 15065602 (3), 19881540 (2), 16887905 (2) (see all 17 )
estrogen
51.1
128
19383788 (4), 17893710 (3), 17652530 (3), 14500345 (3) (see all 85 )
vegf
47.2
126
15571312 (6), 14981918 (4), 10424737 (4), 17167724 (3) (see all 76 )
progesterone
46.5
75
15459769 (2), 15605082 (2), 7534041 (1), 10545751 (1) (see all 66 )
sodium bisulfite
46.1
1
17369979 (1)
tgf beta1
45.2
27
20043090 (3), 19741012 (3), 20440766 (2), 16253118 (2) (see all 13 )
erlotinib
38.4
12
19433879 (3), 19147758 (2), 16361555 (2), 18473353 (1) (see all 5 )
Search CenterWatch for drugs/clinical trials and news about CDH1 / CADH1
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Transcriptsfor CDH1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CDH1 gene: NM_004360.3 Unigene Cluster for CDH1:
Cadherin 1, type 1, E-cadherin (epithelial) Hs.461086 [show with all ESTs ] Unigene Representative Sequence: NM_004360 12 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000261769 (uc002ewg.1 uc010vlj.1 uc010cfg.1 ) ENST00000566612 ENST00000422392 ENST00000566510 ENST00000562836 ENST00000564676 ENST00000564745 ENST00000561751 ENST00000567320 ENST00000565810 ENST00000562118 ENST00000563198 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CDH1 (NM_004360 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CDH1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CDH1
Additional cDNA sequence: AB025105.1 AB025106.1 AK290012.1 AK297913.1 AK309703.1 AK311198.1 AK312551.1 BC013851.1 BC141838.1 BC144283.1 BC146662.1 EU709494.1 L08599.1 X12790.1 X52279.1 Z13009.1 Z18923.1
15 DOTS entries : DT.218339 DT.86847981
DT.91769179 DT.40226053 DT.91769199 DT.120670403 DT.100778483 DT.91769188 DT.91769192 DT.91769203 DT.91970482 DT.95253807 DT.95321029 DT.100801895 DT.120670391 24/391 AceView cDNA sequences (see all 391 ):
CB854410 X12790 N85687 BM981473 BI335747 AI459018 BI789185 X52279 T58996 BM825567 AI146368 BQ083439 AA603448 AW517069 AL708474 N30761 BM822938 T11384 AI864888 AU125850 BM769814 BX439592 AW002816 BI061555 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for CDH1 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b ^ 17a · 17b SP1 :       -                 -         -               SP2 :       -                         -               SP3 :       -               -   -         -               SP4 :                                             SP5 :                                            
ECgene alternative splicing isoforms for CDH1
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Expression for CDH1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CDH1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGTGGGTGCT
About this image CDH1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CDH1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CDH1 SOURCE GeneReport for Unigene cluster: Hs.461086 UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830 Tissue specificity : Non-neural epithelial tissues SABiosciences Expression via Pathway-Focused PCR Arrays including CDH1 (see all 17 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CDH1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CDH1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CDH1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CDH1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDH1
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Orthologsfor CDH1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CDH1 gene from 4/14 species (see all 14 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
CDH11
cadherin 1, type 1, E-cadherin (epithelial)
64.36(n) 63.67(a)
 
415860 NM_001039258.1 NP_001034347.1
lizard (Anolis carolinensis)
Reptilia
CDH36
--
62(a)
1 ↔ 1
GL343914.1(89036-111068)
African clawed frog (Xenopus laevis)
Amphibia
Xl.74832
Xenopus laevis (clone XTCAD-1) cadherin gene, complete more
71.79(n)
 
L29057.1
zebrafish (Danio rerio)
Actinopterygii
cdh12
cadherin 1, epithelial
73.52(n)
 
114424 AF364811.1
ENSEMBL Gene Tree for CDH1 (if available)TreeFam Gene Tree for CDH1 (if available)
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Paralogsfor CDH1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CDH1 gene CDH4 2 CDH18 2 DSG4 2 CDH3 2 CDH10 2 CDH11 2 CDH6 2 DSC2 2 CDH8 2 CDH20 2 CDH22 2 DSC1 2 CDH19 2 DSG1 2 CDH7 2 DSG2 2 CDH9 2 CDH12 2 CDH26 2 DSC3 2 CDH2 2 CDH24 2 CDH15 2 CDH5 2 DSG3 2 18/29 SIMAP similar genes for CDH1 using alignment to 8 protein entries: CADH1_HUMAN (see all proteins )
(see all similar genes ):CDH3 CDH2 CDH4 DKFZp434K1130 DKFZp686P18250 CDH15 ME1 CDH26 Nbla04261 CDH17 CDH13 DSC2 CDH10 CDH19 CDH7 CDH24 CDH20 DSC1
CDH1 for paralogs About GeneDecksing
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Genomic Variantsfor CDH1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CDH1 (68771128 - 68869445 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 7 variations for CDH1 6 CNVs : 67022 9761 67021 77388 77387 5831 1 Indel : 88182 Human Gene Mutation Database (HGMD) : CDH1 Locus Specific Mutation Databases (LSDB): CDH1 5 SABiosciences Cancer Mutation PCR Assays for CDH1 :
5/6 SABiosciences Cancer Mutation PCR Arrays containing CDH1 (see all 6 ):
2 SABiosciences qBiomarker Copy Number PCR Arrays containing CDH1 :
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CDH1
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Disorders
/ Diseasesfor CDH1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CDH1 for disorders About GeneDecksing OMIM gene information: 192090 OMIM disorders : 608089 167000 114480 137215 176807 UniProtKB/Swiss-Prot: CADH1_HUMAN, P12830
Defects in CDH1 are the cause of hereditary diffuse gastric cancer (HDGC) [MIM:137215]. An autosomal dominant cancer predisposition syndrome with increased susceptibility to diffuse gastric cancer. Diffuse gastric cancer is a malignant disease characterized by poorly differentiated infiltrating lesions resulting in thickening of the stomach. Malignant tumors start in the stomach, can spread to the esophagus or the small intestine, and can extend through the stomach wall to nearby lymph nodes and organs. It also can metastasize to other parts of the body. Note=Heterozygous germline mutations CDH1 are responsible for familial cases of diffuse gastric cancer. Somatic mutations in the has also been found in patients with sporadic diffuse gastric cancer and lobular breast cancer Defects in CDH1 are a cause of susceptibility to endometrial cancer (ENDMC) [MIM:608089] Defects in CDH1 are a cause of susceptibility to ovarian cancer (OC) [MIM:167000]. Ovarian cancer common malignancy originating from ovarian tissue. Although many histologic types of ovarian neoplasms have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease 20/243 diseases for CDH1 (see all 243 ): About MalaCards gastric cancer, familial diffuse, with or without cleft lip and/or palate cleft lip/palate open-angle glaucoma ovarian cancer monoclonal gammopathy of undetermined significance zollinger-ellison syndrome hailey-hailey disease lymphoepithelioma-like carcinoma alveolar soft part sarcoma thyroiditis squamous cell carcinoma diffuse large b-cell lymphoma primary open angle glaucoma cleft lip familial adenomatous polyposis pseudomyxoma peritonei pemphigus vulgaris carcinoma biphasic synovial sarcoma renal clear cell carcinoma 17 diseases from the University of Copenhagen DISEASES database for CDH1 :Carcinoma Breast cancer Colorectal cancer Prostate cancer Lung cancer Urinary bladder cancer Hepatocellular carcinoma Ovarian cancer Pancreatic cancer Adenoma Stomach cancer Melanoma Ductal carcinoma in situ Endometrial cancer Nasopharynx carcinoma Ureteral disease Renal cell carcinoma 10/96 Novoseek disease relationships for CDH1 gene (see all 96 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
metastasis
85
1015
14580257 (8), 17649807 (7), 16033070 (7), 12508543 (6) (see all 99 )
carcinoma lobular
83
139
9496256 (7), 8256859 (4), 12478484 (3), 10433926 (3) (see all 69 )
tumors
81.9
1887
12712492 (8), 12760799 (6), 19446405 (6), 9306561 (5) (see all 99 )
carcinoma
81.4
647
17649807 (6), 18062285 (5), 16033070 (5), 19253033 (5) (see all 99 )
gastric cancer
79.7
576
10072428 (7), 12908778 (7), 17991318 (6), 15288293 (5) (see all 99 )
cancer
78
660
8507565 (4), 10424737 (4), 15674322 (4), 10994623 (4) (see all 99 )
gastric carcinoma
76.3
247
11313896 (7), 18250063 (6), 15128072 (6), 10408833 (5) (see all 99 )
carcinoma ductal
72.4
92
7534041 (3), 12478484 (3), 17649807 (2), 12168049 (2) (see all 63 )
carcinoma squamous cell
72
272
9301546 (5), 16399195 (5), 8365008 (3), 15899218 (3) (see all 99 )
breast cancer
71.3
484
11597316 (6), 12658921 (6), 17997862 (6), 11912130 (5) (see all 99 )
GeneTests: CDH1 Hereditary Diffuse Gastric Cancer Genetic Association Database (GAD): CDH1 Human Genome Epidemiology (HuGE) Navigator: CDH1 (113 documents) Export disorders for CDH1 gene to outside databases
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Publicationsfor CDH1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CDH1 gene, integrated from 9 sources (see all 3571 ): (articles sorted by number of sources associating them with CDH1) Utopia : connect your pdf to the dynamic world of online information
Association of E-cadherin germ-line alterations with prostate cancer. (PubMed id 11705864) 1 , 2 , 4, 9 Ikonen T.... Koivisto P.A. (2001) Germline mutations in E-cadherin do not explain association of hereditary prostate cancer, gastric cancer and breast cancer. (PubMed id 11948460) 1 , 4, 9 Jonsson B.A....Gronberg H. (2002) Calcium influx triggers the sequential proteolysis of extracellular and cytoplasmic domains of E-cadherin, leading to loss of beta-catenin from cell-cell contacts. (PubMed id 10597309) 1 , 2 , 9 Ito K.... Saya H. (1999) [Association of -160(C-->A) polymorphism in CDH1 gene with gastric cancer risk in Fujian Chinese population] (PubMed id 16215948) 1 , 4, 9 Song C.G....Huang W. (2005) Contribution of cyclin d1 (CCND1) and E-cadherin (CDH1) polymorphisms to familial and sporadic colorectal cancer. (PubMed id 11896626) 1 , 4, 9 Porter T.R....Maher E.R. (2002) Screening E-cadherin in gastric cancer families reveals germline mutations only in hereditary diffuse gastric cancer kindred. (PubMed id 11968083) 1 , 2 , 9 Oliveira C....Caldas C. (2002) A germline E-cadherin mutation in a family with gastric and colon cancer. (PubMed id 11562785) 1 , 2 , 9 Salahshor S.... Lindblom A. (2001) The E-cadherin gene (CDH1) variants T340A and L599V in gastric and colorectal cancer patients in Korea. (PubMed id 10896919) 1 , 2 , 9 Kim H.C.... Bodmer W.F. (2000) E-cadherin germline mutations in familial gastric cancer. (PubMed id 9537325) 1 , 2 , 9 Guilford P.J.... Reeve A.E. (1998) Mutations of the human E-cadherin (CDH1) gene. (PubMed id 9744472) 1 , 2 , 9 Berx G.... van Roy F. (1998)
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External Searches for CDH1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CDH1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CDH1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CDH1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CDH1 Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for CDH1 Genetics and Cytogenetics in Oncology and Haematology GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/CDH1 NIEHS-SNPs http://egp.gs.washington.edu/data/cdh1/ Wikipedia http://en.wikipedia.org/wiki/E-cadherin
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About This Section Patent Information for CDH1 gene: Search GeneIP for patents involving CDH1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CDH1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for CDH1 OriGene shRNA RFP for CDH1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CDH1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CDH1 OriGene Protein Over-expression Lysate for CDH1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CDH1 OriGene 3'-UTR Clone for CDH1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CDH1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for CDH1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CDH1 OriGene Custom Protein Services for CDH1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CDH1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CDH1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CDH1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CDH1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CDH1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CDH1
Antibodies & Assays for CDH1  
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CDH1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDH1
ThermoFisher Antibody for CDH1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CDH1
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