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Aliases for CDC42-IT1 Gene

Subcategory (RNA class) for CDC42-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDC42-IT1 Gene

  • CDC42 Intronic Transcript 1 2 3 5
  • CDC42 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for CDC42-IT1 Gene

Previous GeneCards Identifiers for CDC42-IT1 Gene

  • GC00U933660
  • GC01P022386

Summaries for CDC42-IT1 Gene

GeneCards Summary for CDC42-IT1 Gene

CDC42-IT1 (CDC42 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDC42-IT1 Gene

Genomics for CDC42-IT1 Gene

Regulatory Elements for CDC42-IT1 Gene

Enhancers for CDC42-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G022023 1.4 ENCODE dbSUPER 22.8 -33.5 -33459 3.8 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 GLIS1 LINC00339 CDC42-IT1 ENSG00000271428 HSPG2 WNT4 ZBTB40-IT1 LINC01635
GH01G021779 1.4 ENCODE dbSUPER 22.6 -276.7 -276663 6.2 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 USP48 CDC42-IT1 ENSG00000271428 ZBTB40-IT1 RAP1GAP ENSG00000231978
GH01G021893 2 FANTOM5 Ensembl ENCODE dbSUPER 14.3 -153.9 -153903 22.6 HNRNPUL1 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 ZFP64 SIN3A YBX1 CDC42-IT1 ENSG00000271428 HSPG2 LDLRAD2 ZBTB40-IT1 EPHB2 RPL21P29 GC01M021883
GH01G022051 1.4 ENCODE dbSUPER 18.2 -5.9 -5890 3.1 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 LINC00339 CDC42-IT1 ENSG00000271428 ZBTB40-IT1 CDC42 LINC01635 LOC105376841
GH01G021331 2.2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -720.0 -720011 15.2 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ECE1 NBPF2P ENSG00000236936 CDC42-IT1 NBPF3 ALPL EIF4G3 LOC100506801
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDC42-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CDC42-IT1 Gene

Chromosome:
1
Start:
22,059,197 bp from pter
End:
22,064,199 bp from pter
Size:
5,003 bases
Orientation:
Plus strand

Genomic View for CDC42-IT1 Gene

Genes around CDC42-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDC42-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDC42-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CDC42-IT1 Gene

Proteins for CDC42-IT1 Gene

Post-translational modifications for CDC42-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDC42-IT1 Gene

Domains & Families for CDC42-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDC42-IT1 Gene

Function for CDC42-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDC42-IT1 Gene

Localization for CDC42-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDC42-IT1 Gene

Pathways & Interactions for CDC42-IT1 Gene

SuperPathways for CDC42-IT1 Gene

No Data Available

Interacting Proteins for CDC42-IT1 Gene

Gene Ontology (GO) - Biological Process for CDC42-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDC42-IT1 Gene

Drugs & Compounds for CDC42-IT1 Gene

No Compound Related Data Available

Transcripts for CDC42-IT1 Gene

mRNA/cDNA for CDC42-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CDC42-IT1 Gene

No ASD Table

Relevant External Links for CDC42-IT1 Gene

GeneLoc Exon Structure for
CDC42-IT1
ECgene alternative splicing isoforms for
CDC42-IT1

Expression for CDC42-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDC42-IT1 Gene

genes like me logo Genes that share expression patterns with CDC42-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDC42-IT1 Gene

Orthologs for CDC42-IT1 Gene

Evolution for CDC42-IT1 Gene

ENSEMBL:
Gene Tree for CDC42-IT1 (if available)
TreeFam:
Gene Tree for CDC42-IT1 (if available)

No data available for Orthologs for CDC42-IT1 Gene

Paralogs for CDC42-IT1 Gene

No data available for Paralogs for CDC42-IT1 Gene

Variants for CDC42-IT1 Gene

Relevant External Links for CDC42-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDC42-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDC42-IT1 Gene

Disorders for CDC42-IT1 Gene

Relevant External Links for CDC42-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDC42-IT1

No disorders were found for CDC42-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDC42-IT1 Gene

Publications for CDC42-IT1 Gene

No publications were found for CDC42-IT1 Gene.

Products for CDC42-IT1 Gene

Sources for CDC42-IT1 Gene

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