 |
 | Services
| |
 |
Aliases & Descriptions for CD9
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 5H9 2 | | BA2 1, 2 | | BTCC-1 2 | | DRAP-27 2 | | GIG2 2 | | MIC3 2, 3, 5 | | MRP-1 1, 2, 3 | | OTTHUMP00000041574 2 | | OTTHUMP00000041576 2 | | P24 1, 2 | | TSPAN29 1, 2, 3 | | Tetraspanin-29 3 | | Tspan-29 3 | | p24 3 |
| | | Descriptions |
|---|
| 5H9 antigen 2, 3 | | CD9 antigen 2, 3 | | CD9 antigen (p24) 1, 2 | | CD9 molecule 2 | | Cell growth-inhibiting gene 2 protein 3 | | Leukocyte antigen MIC3 2, 3 | | Motility-related protein 3 | | antigen defined by monoclonal antibody 602-29 2 | | growth-inhibiting gene 2 protein 2 | | motility related protein 2 | | motility related protein-1 2 | | p24 antigen 2 |
|
| | Search outside databases for aliases for CD9 genePrevious GC identifers: GC12P006164 GC12P006284 |
Summaries for CD9(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CD9: The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein that is known to complex with integrins and other transmembrane 4 superfamily proteins. It can modulate cell adhesion and migration and also trigger platelet activation and aggregation. In addition, the protein appears to promote muscle cell fusion and support myotube maintenance. [provided by RefSeq] UniProtKB/Swiss-Prot: CD9_HUMAN, P21926Function: Involved in platelet activation and aggregation. Regulates paranodal junction formation. Involved in cell adhesion, cell motility and tumor metastasis. Required for sperm-egg fusionGene Wiki entry for CD9 |
Genomic Location for CD9
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CD9 gene 
Entrez Gene cytogenetic band: 12p13.3 Ensembl cytogenetic band: 12p13.31 HGNC cytogenetic band: 12p13CD9 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P006179:
(about GC identifiers)
Start:
|
6,179,142 bp from pter |
End:
|
6,222,635 bp from pter |
Size:
|
43,494 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000012.10 NT_009759.15
| Proteins for CD9
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CD9_HUMAN, P21926 (See
protein sequence)Recommended Name: CD9 antigen Size: 228 amino acids; 25416 Da
Subunit: Forms both disulfide-linked homodimers and higher homooligomers as well as heterooligomers with other members of the tetraspanin family. Associates with CR2/CD21 and with PTGFRN/CD9P1. Interacts directly with IGSF8
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q5J7W6 Q96ES4Post-translational modifications:
Protein exists in three forms with molecular masses between 22 and 27 kDa, and is known to carry covalently linked fatty acids1
REFSEQ proteins: NP_001760.1
ENSEMBL proteins: ENSP00000371955 ENSP00000371958 ENSP00000009180 ENSP00000371959
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CD9:  | Invitrogen Antibodies for CD9 |  | Millipore Mono- and Polyclonal Antibodies for the study of CD9 |  | Sigma-Aldrich Antibodies for CD9 |  | R&D Systems Antibodies for CD9 |  | Antibodies from Abcam (CD9), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (CD9) |  | Novus Biologicals Antibodies for CD9 |
Assays for CD9: | Protein
Domains/ Families for CD9(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P21926
ProtoNet protein and cluster: P21926 1 Blocks protein family: IPB000301 Transmembrane four family signature
UniProtKB/Swiss-Prot: CD9_HUMAN, P21926Similarity: Belongs to the tetraspanin (TM4SF) family | Gene Function for CD9
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001769
Applied Biosystems Silencer® siRNAs for CD9
Sigma-Aldrich siRNA and siRNA Panels for CD9  Sigma-Aldrich shRNA Panels and shRNA for CD9  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001769                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001769                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001769 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001769
UniProtKB/Swiss-Prot: CD9_HUMAN, P21926Function: Involved in platelet activation and aggregation. Regulates paranodal junction formation. Involved in cell adhesion, cell motility and tumor metastasis. Required for sperm-egg fusionGenatlas biochemistry entry for CD9:cell differentiation antigen CD9 (p34),24kDa,membrane glycoprotein,single chain,identified by monoclonal antibodies ALB6,BLI16,FMC566 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Cd9):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for CD9
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for CD9 
5/95 Interacting proteins for CD9 (ENSP000000091803) via UniProtKB, MINT, and/or STRING (see all 95
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for CD9(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CD9 10/36 Novoseek chemical compound relationships for CD9 gene (see all 36
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neopterin |
68.25 |
29 |
2214610 (3), 7529507 (2), 8097095 (2), 2126281 (2) (see all 24) |
| emulphor |
49.70 |
2 |
12705892 (1), 9804823 (1) |
| mdms |
38.81 |
2 |
9568543 (1), 11897037 (1) |
| rantes |
21.89 |
1 |
17331032 (1) |
| thromboxane |
11.19 |
4 |
2306515 (1), 8217830 (1), 1832992 (1) |
| ribonucleic acid |
4.80 |
4 |
9202611 (2), 9202613 (1), 8804331 (1) |
| adp |
3.20 |
3 |
2317202 (1), 2306515 (1) |
| toluidine |
2.54 |
4 |
7524750 (1), 9472805 (1), 9129208 (1) |
| fatty acid |
1.41 |
1 |
10224565 (1) |
| cholesterol |
1.34 |
5 |
15004227 (1), 17644758 (1) |
About this table
|
Transcripts for CD9(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001769
Sigma-Aldrich siRNA and siRNA Panels for CD9  Sigma-Aldrich shRNA Panels and shRNA for CD9  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001769 REFSEQ mRNAs for CD9 gene: NM_001769.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001769               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001769                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001769                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001769  Additional cDNA sequence: AB079244.1 AK025016.1 AK296332.1 AK296894.1 AK298431.1 AK308700.1 AK311020.1 AK315219.1 AY423720.1 AY966455.1 BC011988.1 CR598565.1 CR599016.1 CR599322.1 CR619299.1 L34068.1 M38690.1 X60111.1 24/29 DOTS entries (see all 29
): DT.100849778 DT.453110 DT.100849783 DT.95222449 DT.95214031 DT.92043609 DT.95193123 DT.121110412 DT.121110457 DT.91867150 DT.97860873 DT.100849774 DT.100031871 DT.121110448 DT.121110399 DT.121110410 DT.100849776 DT.121110346 DT.121110398 DT.121110426 DT.91674152 DT.95213964 DT.95214018 DT.95214065 9 AceView cDNA sequences:CR599322 CR619299 L34068 BC011988 NM_001769 CR598565 X60111 CR599016 M38690
highest scoring ESTs for CD9:M38690 AA173738 AA524591 AA527819 AA640721 AA640905 AW844485 AW950198 BC011988 BE002765 Unigene Cluster for CD9: CD9 molecule Hs.114286 [show with all ESTs]Unigene Representative Sequence: AK025016
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for CD9 (see all 8
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CD9
4 Ensembl transcripts including schematic representations: ENST00000382515
ENST00000382518
ENST00000009180
ENST00000382519
|
Expression for CD9
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CD9 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CD9
1 / 2 / 3 3 probe-sets matching CD9 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAGATTGGTG
SOURCE GeneReport for Unigene cluster: Hs.114286
Expression variation in blood from EXPOLDB for CD9 UniProtKB/Swiss-Prot: CD9_HUMAN, P21926Tissue specificity: Expressed by a variety of hematopoietic and epithelial cells |
Orthologs for CD9
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CD9 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for CD9
ENSEMBL Gene Tree for CD9 | Paralogs for CD9(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CD9 gene
- TSPAN22 CD812
|
SNPs/Variants for CD9(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CD9 (up to first 250kb)
|
Disorders & Mutations for CD9
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 143030
10/72 Novoseek disease relationships for CD9 gene (see all 72
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| immunodeficiency |
87.36 |
153 |
9419745 (2), 12624024 (2), 1677177 (2), 1323624 (2) (see all 99) |
| hiv infections |
81.89 |
78 |
9403423 (3), 14646380 (2), 8207645 (2), 8604210 (2) (see all 67) |
| aids-related complex |
81.67 |
5 |
1506978 (1), 2123627 (1), 8811465 (1), 1974725 (1) |
| aids |
73.56 |
82 |
10609356 (3), 11766280 (2), 1351128 (2), 11109648 (2) (see all 59) |
| viremia |
63.77 |
13 |
7906292 (1), 9845513 (1), 14646380 (1), 8097416 (1) (see all 13) |
| pediatric aids |
54.20 |
2 |
9041402 (1), 9420321 (1) |
| opportunistic infections |
54.05 |
2 |
2227628 (1), 9586886 (1) |
| virus infection |
52.16 |
19 |
8655993 (1), 14872188 (1), 2186629 (1), 2227628 (1) (see all 19) |
| vertical transmission |
49.49 |
3 |
8784370 (1), 8161446 (1), 8280414 (1) |
| kaposi sarcoma |
37.34 |
2 |
14559986 (2) |
About this table
1 PharmGKB disease relationship for CD9 geneAbout this table
Human Genome Epidemiology Navigator: CD9 (1 document)
|
Medical News for CD9(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CD9 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/572 PubMed articles for CD9 gene (see all 572
):- Organization of the human CD9 gene. (PubMed id 8486348)1, 3, 4 Rubinstein E.... Boucheix C. (1993)
- Evidence for specific tetraspanin homodimers: inhibition of palmitoylation makes cysteine residues available for cross-linking. (PubMed id 14556650)1, 3, 4 Kovalenko O.V.... Hemler M.E. (2004)
- Differential stability of tetraspanin/tetraspanin interactions: role of palmitoylation. (PubMed id 11959120)1, 3, 4 Charrin S....Rubinstein E. (2002)
- Suppression of cell motility and metastasis by transfection with human motility-related protein (MRP-1/CD9) DNA. (PubMed id 8478605)1, 3, 4 Ikeyama S.... Miyake M. (1993)
- Identification of the motility-related protein (MRP-1), recognized by monoclonal antibody M31-15, which inhibits cell motility. (PubMed id 1720807)1, 3, 4 Miyake M.... Ikeyama S. (1991)
- Molecular cloning of the CD9 antigen. A new family of cell surface proteins. (PubMed id 1840589)1, 3, 4 Boucheix C.... Uzan G. (1991)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The tetraspanin CD9 is preferentially expressed on the human CD4(+)CD45RA+ naive T cell population and is involved in T cell activation. (PubMed id 15196249)3, 4 Kobayashi H.... Morimoto C. (2004)
- Structural requirements for the inhibitory action of the CD9 large extracellular domain in sperm/oocyte binding and fusion. (PubMed id 14575715)3, 4 Higginbottom A.... Monk P.N. (2003)
- EWI-2 is a major CD9 and CD81 partner and member of a novel Ig protein subfamily. (PubMed id 11504738)3, 4 Stipp C.S.... Hemler M.E. (2001)
|
Search for CD9
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CD9
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CD9
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CD9(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CD9(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CD9:

 | |
 | | | | |
|
 |  |  |
| | Recombinant Proteins (CD9) | | Antibodies (CD9) |
| | | Search Tocris compounds for CD9 |
|
 |
 | | | Antibodies for CD9 |
| |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|