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Aliases & Descriptions for CD79B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions B-cell antigen receptor complex-associated protein beta chain 2 B-cell-specific glycoprotein B29 2 , 3 CD79B antigen (immunoglobulin-associated beta) 1 , 2 CD79b antigen 2 , 3 CD79b molecule, immunoglobulin-associated beta 2 Immunoglobulin-associated B29 protein 3 immunoglobulin-associated B29 2
Search outside databases for aliases for CD79B genePrevious GC identifers: GC17M061643 GC17M064432 GC17M062346 GC17M062479
Summaries for CD79B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CD79B : The B lymphocyte antigen receptor is a multimeric complex that includes the antigen-specificcomponent, surface immunoglobulin (Ig). Surface Ig non-covalently associates with two otherproteins, Ig-alpha and Ig-beta, which are necessary for expression and function of the B-cellantigen receptor. This gene encodes the Ig-beta protein of the B-cell antigen component.Alternatively spliced transcript variants encoding different isoforms have been described.[provided by RefSeq] UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259 Function : Required in cooperation with CD79A for initiation of the signal transduction cascadeactivated by the B-cell antigen receptor complex (BCR) which leads to internalization of thecomplex, trafficking to late endosomes and antigen presentation. Enhances phosphorylation ofCD79A, possibly by recruiting kinases which phosphorylate CD79A or by recruiting proteins whichbind to CD79A and protect it from dephosphorylation
Gene Wiki entry for CD79B
Genomic Location for CD79B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CD79B gene Entrez Gene cytogenetic band: 17q23 Ensembl cytogenetic band: 17q23.3 HGNC cytogenetic band: 17q23 CD79B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M059359:
(about GC identifiers )
Start:
59,359,830 bp from pter
End:
59,363,446 bp from pter
Size:
3,617 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for CD79B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259 (See
protein sequence )Recommended Name: B-cell antigen receptor complex-associated protein beta chain precursor Size : 229 amino acids; 26048 Da
Subunit : Heterodimer of alpha and beta chains; disulfide-linked. Part of the B-cell antigenreceptor complex where the alpha/beta chain heterodimer is non-covalently associated with anantigen-specific membrane-bound surface immunoglobulin of two heavy chains and two light chains
Subcellular location : Cell membrane; Single-pass type I membrane protein. Note=Following antigenbinding, the BCR has been shown to translocate from detergent-soluble regions of the cell membraneto lipid rafts although signal transduction through the complex can also occur outside lipid rafts(By similarity)
Secondary accessions : Q53FS2 Q9BU06Alternative splicing : 2 isoforms : P40259-1 P40259-2
Post-translational modifications:
Phosphorylated on tyrosine upon B-cell activation1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000617.1 NP_001035022.1 NP_067613.1 ENSEMBL proteins: ENSP00000376544 ENSP00000006750 ENSP00000245862 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CD79B: Assays for CD79B:
Protein
Domains/ Families for CD79B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P40259 ProtoNet protein and cluster: P40259
3 Blocks protein families : IPB003110 Phosphorylated immunoreceptor signaling ITAM IPB003599 Immunoglobulin subtype IPB013106 Immunoglobulin V-set UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259 Similarity : Contains 1 Ig-like V-type (immunoglobulin-like) domainSimilarity : Contains 1 ITAM domain
Gene Function for CD79B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021602 Applied Biosystems Silencer ® siRNAs for CD79B Sigma-Aldrich siRNA and siRNA Panels for CD79B Sigma-Aldrich shRNA for CD79B Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000626                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000626                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000626  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001039933 UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259 Function : Required in cooperation with CD79A for initiation of the signal transduction cascadeactivated by the B-cell antigen receptor complex (BCR) which leads to internalization of thecomplex, trafficking to late endosomes and antigen presentation. Enhances phosphorylation ofCD79A, possibly by recruiting kinases which phosphorylate CD79A or by recruiting proteins whichbind to CD79A and protect it from dephosphorylation
Genatlas biochemistry entry for CD79B :cell differentiation antigen CD79B,expressed on B cells
4 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Cd79b) :1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004888 transmembrane receptor activity
IEA --
About this table
Pathways & Interactions for CD79B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for CD79B (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CD79B 5/47 Interacting proteins for CD79B (ENSP00000006750 3 ) via UniProtKB, MINT, and/or STRING (see all 47
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006955 immune response
TAS 8486355 GO:0007166 cell surface receptor linked signal transduction
IEA --
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Drugs & Compounds for CD79B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CD79B 7 Novoseek chemical compound relationships for CD79B gene
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Transcripts for CD79B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021602 Sigma-Aldrich siRNA and siRNA Panels for CD79B Sigma-Aldrich shRNA for CD79B Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000626 NM_001039933 NM_021602
REFSEQ mRNAs for CD79B gene (3 alternative transcripts): NM_000626.2 NM_001039933.1 NM_021602.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000626 NM_001039933 NM_021602
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000626                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000626                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000626  
Additional cDNA sequence: AK222954.1 AK223210.1 AK313583.1 BC002975.1 BC030210.1 BC032651.1 CR591997.1 CR592092.1 CR599571.1 CR606875.1 CR608074.1 CR617922.1 CR618467.1 CR623737.1 M80461.1 M89957.1 S52229.1 S79249.1 X83539.1
7 DOTS entries : DT.311555 DT.100754192 DT.95080712 DT.100020983 DT.120966709 DT.91744311 DT.95301786
24/207 AceView cDNA sequences (see all 207
):BG392020 AU099391 BM920096 BM924097 BI836408 AY212253 CR623737 CR599571 BX280250 AL559878 CA415356 BX336723 CR591997 BG755705 CR617922 S79249 AU105583 CR606875 CR592092 CR618467 CR608074 AI239619 X83539 BF663298
highest scoring ESTs for CD79B :M89957 AA904662 AU099391 AW404292 AW404525 AW404912 AW405827 AW406235 AW406444 AW407159
Unigene Cluster for CD79B: CD79b molecule, immunoglobulin-associated beta Hs.89575 [show with all ESTs ] Unigene Representative Sequence: AK223210 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CD79B (see all 6
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6a · 6b · 6c SP1 :           -   -   -                 SP2 :           -   -   -                 SP3 :           -   -   -   -   -             SP4 :                               SP5 :           -                    
About this scheme ECgene alternative splicing isoforms for CD79B 3 Ensembl transcripts including schematic representations : ENST00000392795
ENST00000006750
ENST00000349817
Expression for CD79B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CD79B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CD79B 1 / 2 / 3
5 probe-sets matching CD79B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.89575 Expression variation in blood from EXPOLDB for CD79B
UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259 Tissue specificity : B-cells
Orthologs for CD79B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CD79B gene from 5 species
About this table Species with no ortholog for CD79B ENSEMBL Gene Tree for CD79B Paralogs for CD79B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for CD79B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CD79B (up to first 250kb)
Disorders & Mutations for CD79B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 147245 disorders : 612692 UniProtKB/Swiss-Prot: CD79B_HUMAN, P40259
Defects in CD79B are a cause of non-Bruton type agammaglobulinemia [MIM:601495].Agammaglobulinemia is an immunodeficiency disease which results in developmental defects in thematuration pathway of B-cells
10 Novoseek disease relationships for CD79B gene
About this table 1 PharmGKB disease relationship for CD79B gene About this table Human Gene Mutation Database : CD79B
Medical News for CD79B (Possibly Related Articles in
Doctor's Guide )
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Publications for CD79B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/150 PubMed articles for CD79B gene (see all 150
): The complete sequence of the human CD79b (Ig beta/B29) gene: identification of a conserved exon/intron organization, immunoglobulin-like regulatory regions, and allelic polymorphism. (PubMed id 7913081) 1, 3, 4 Hashimoto S.... Gregersen P.K. (1994) The human Ig-beta cDNA sequence, a homologue of murine B29, is identical in B cell and plasma cell lines producing all the human Ig isotypes. (PubMed id 8419481) 1, 3, 4 Hashimoto S.... Chiorazzi N. (1993) Isolation and chromosomal mapping of the human immunoglobulin- associated B29 gene (IGB). (PubMed id 8486355) 1, 3, 4 Wood W.J. Jr.... Denny C.T. (1993) Cloning and sequencing of the cDNA encoding the human homologue of the murine immunoglobulin-associated protein B29. (PubMed id 1534761) 1, 3, 4 Mueller B.S.... Terhorst C. (1992) Physical linkage of the B29/Ig-beta (CD79B) gene to the skeletal muscle, sodium-channel, and growth hormone genes in rat and human. (PubMed id 9545642) 1, 2, 3 Nakazato S....Ono M. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Alternative splicing of CD79a (Ig-alpha/mb-1) and CD79b (Ig-beta/B29) RNA transcripts in human B cells. (PubMed id 7643857) 3, 4 Hashimoto S.... Gregersen P.K. (1995) Isolation and chemical characterization of the human B29 and mb-1 proteins of the B cell antigen receptor complex. (PubMed id 7514267) 3, 4 Vasile S.... Seon B.K. (1994) Bob1 (OCA-B/OBF-1) differential transactivation of the B cell-specific B29 (Ig beta) and mb-1 (Ig alpha) promoters. (PubMed id 11907094) 1, 3 Malone C.S. and Wall R. (2002) Igbeta(CD79b) mRNA expression in chronic lymphocytic leukaemia cells correlates with immunoglobulin heavy chain gene mutational status but does not serve as an independent predictor of clinical severity. (PubMed id 17315213) 1, 3 Cajiao I....Liebhaber S.A. (2007)
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Genome Databases showing CD79B
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CD79B
(According to HUGE )
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Specialized Databases showing CD79B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
CD79Bbase http://bioinf.uta.fi/CD79Bbase/
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-- Services for CD79B (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CD79B:
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