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Aliases & Descriptions for CD63
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Granulophysin 3 LAMP-3 2 , 3 ME491 1 , 2 MLA1 2 , 3 , 5 OMA81H 2 , 3 TSPAN30 1 , 2 , 3 Tetraspanin-30 3 Tspan-30 3 granulophysin 2 tetraspanin-30 2
Descriptions CD63 antigen 2 , 3 CD63 antigen (melanoma 1 antigen) 1 , 2 CD63 molecule 2 Lysosomal-associated membrane protein 3 3 Melanoma-associated antigen ME491 2 , 3 Ocular melanoma-associated antigen 2 , 3 lysosome-associated membrane glycoprotein 3 2 melanoma 1 antigen 2 melanoma-associated antigen MLA1 2
Search outside databases for aliases for CD63 genePrevious GC identifers: GC12M056043 GC12M056192 GC12M055834
Summaries for CD63 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CD63 : The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as thetetraspanin family. Most of these members are cell-surface proteins that are characterized by thepresence of four hydrophobic domains. The proteins mediate signal transduction events that play arole in the regulation of cell development, activation, growth and motility. This encoded proteinis a cell surface glycoprotein that is known to complex with integrins. It may function as a bloodplatelet activation marker. Deficiency of this protein is associated with Hermansky-Pudlaksyndrome. Also this gene has been associated with tumor progression. The use of alternatepolyadenylation sites has been found for this gene. Alternative splicing results in multipletranscript variants encoding different proteins. [provided by RefSeq] UniProtKB/Swiss-Prot: CD63_HUMAN, P08962 Function : This antigen is associated with early stages of melanoma tumor progression. May play arole in growth regulation
Gene Wiki entry for CD63
Genomic Location for CD63
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CD63 gene Entrez Gene cytogenetic band: 12q12-q13 Ensembl cytogenetic band: 12q13.2 HGNC cytogenetic band: 12q12-q13 CD63 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M054405:
(about GC identifiers )
Start:
54,405,497 bp from pter
End:
54,409,177 bp from pter
Size:
3,681 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000012.10 NT_029419.11 Proteins for CD63
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CD63_HUMAN, P08962 (See
protein sequence )Recommended Name: CD63 antigen Size : 238 amino acids; 25637 Da
Subcellular location : Cell membrane; Multi-pass membrane protein. Lysosome membrane; Multi-passmembrane protein. Late endosome membrane; Multi-pass membrane protein. Note=Also found inWeibel-Palade bodies of endothelial cells. Located in platelet dense granules
Miscellaneous : Lack of expression of CD63 in platelets has been observed in a patient withHermansky-Pudlak syndrome (HPS). Hermansky-Pudlak syndrome (HPS) is a genetically heterogeneous,rare, autosomal recessive disorder characterized by oculocutaneous albinism, bleeding due toplatelet storage pool deficiency, and lysosomal storage defects. This syndrome results fromdefects of diverse cytoplasmic organelles including melanosomes, platelet dense granules andlysosomes. Ceroid storage in the lungs is associated with pulmonary fibrosis, a common cause ofpremature death in individuals with HPS
Secondary accessions : Q5TZP3 Q9UCG6
REFSEQ proteins (2 alternative transcripts):
NP_001035123.1 NP_001771.1 ENSEMBL proteins: ENSP00000257857 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CD63: Invitrogen Antibodies for CD63 Millipore Mono- and Polyclonal Antibodies for the study of CD63 Sigma-Aldrich Antibodies for CD63 R&D Systems Antibodies for CD63 Antibodies from Abcam (CD63 ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (CD63 ) Novus Biologicals Antibodies for CD63
Assays for CD63:
Protein
Domains/ Families for CD63(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P08962 ProtoNet protein and cluster: P08962
1 Blocks protein family : IPB000301 Transmembrane four family signature UniProtKB/Swiss-Prot: CD63_HUMAN, P08962 Similarity : Belongs to the tetraspanin (TM4SF) family
Gene Function for CD63
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001780 Applied Biosystems Silencer ® siRNAs for CD63 Sigma-Aldrich siRNA and siRNA Panels for CD63 Sigma-Aldrich shRNA for CD63 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001040034                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001040034                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001040034  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001780 UniProtKB/Swiss-Prot: CD63_HUMAN, P08962 Function : This antigen is associated with early stages of melanoma tumor progression. May play arole in growth regulation
Genatlas biochemistry entry for CD63 :cell differentiation antigen CD63 (melanoma 1 antigen)
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cd63) : Pathways & Interactions for CD63
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for CD63 5/60 Interacting proteins for CD63 (ENSP00000257857 3 P08962 2 ) via UniProtKB, MINT, and/or STRING (see all 60
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0045807 positive regulation of endocytosis
IEA --
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Drugs & Compounds for CD63 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CD63 10/18 Novoseek chemical compound relationships for CD63 gene (see all 18
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
mdmp
76.21
1
15668187 (1)
adp
61.62
18
7519037 (3), 7684475 (1), 8062509 (1), 18217151 (1) (see all 11 )
fibrinogen
51.04
20
8062509 (2), 8115992 (2), 8560414 (2), 7519037 (2) (see all 12 )
mannose 6-phosphate
43.24
2
11764278 (1), 17959629 (1)
thromboxane a2
41.44
1
8928869 (1)
rantes
40.40
10
12010805 (4), 15668187 (2), 15829999 (1), 12361207 (1)
p002
13.44
1
12579280 (1)
glucose
4.78
2
16131384 (2)
wortmannin
4.20
1
11764278 (1)
sucrose
2.16
1
18000614 (1)
About this table
Transcripts for CD63(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001780 Sigma-Aldrich siRNA and siRNA Panels for CD63 Sigma-Aldrich shRNA for CD63 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001040034 NM_001780
REFSEQ mRNAs for CD63 gene (2 alternative transcripts): NM_001040034.1 NM_001780.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001040034 NM_001780
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001040034                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001040034                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001040034  
Additional cDNA sequence: AF508304.1 AK311893.1 BC002349.2 BC013017.2 BT007073.1 BT020137.1 BT020138.1 CR542096.1 CR593138.1 CR596146.1 CR596402.1 CR598829.1 CR600108.1 CR601904.1 CR602841.1 CR604098.1 CR604975.1 CR606636.1 CR609892.1 CR612079.1 CR615604.1 CR617106.1 CR620394.1 CR620480.1 CR623622.1 CR624383.1 CR625184.1 M58485.1 M59907.1 S93788.1 X07982.1
24/45 DOTS entries (see all 45
): DT.100045710 DT.92464516 DT.92464504 DT.97806488 DT.97838247 DT.100703308 DT.92464535 DT.95133114 DT.100892203 DT.100892222 DT.100892200 DT.100892213 DT.92464537 DT.100045720 DT.100892216 DT.95133186 DT.121147407 DT.95069045 DT.97864758 DT.100034582 DT.101965775 DT.114899 DT.91941712 DT.92043966
24/1311 AceView cDNA sequences (see all 1311
):BE872920 CR600108 AA121623 BQ887578 BF338855 BF526426 BU168899 AA365698 BU155574 AA595126 BQ680306 AU129378 BM845558 CK905018 AA605231 BU174353 AA373241 BU149931 BU542899 AA468398 BE277492 CR615604 AL582859 AA706268
highest scoring ESTs for CD63 :AL540159 AL540160 AL540758 AL544125 AL546270 AL546303 AL549929 AL561656 AL701749 AU076987
Unigene Cluster for CD63: CD63 molecule Hs.445570 [show with all ESTs ] Unigene Representative Sequence: BM809097 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for CD63 (see all 11
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b · 13c · 13d SP1 :           -   -   -     -   -       -           -               SP2 :       -   -   -   -   -     -   -       -           -               SP3 :                   -   -   -     -           -               SP4 :   -     -   -   -   -   -     -   -       -                         SP5 :             -   -     -   -       -                        
About this scheme ECgene alternative splicing isoforms for CD63 1 Ensembl transcript including schematic representation : ENST00000257857
Expression for CD63
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CD63 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CD63 1 / 2 / 3
3 probe-sets matching CD63 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCGAAGAACCSOURCE GeneReport for Unigene cluster: Hs.445570 Expression variation in blood from EXPOLDB for CD63
UniProtKB/Swiss-Prot: CD63_HUMAN, P08962 Tissue specificity : Dysplastic nevi, radial growth phase primary melanomas, hematopoietic cells,tissue macrophages
Orthologs for CD63
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CD63 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for CD63 ENSEMBL Gene Tree for CD63 Paralogs for CD63 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CD63 gene CD82 2 TSPAN8 2 CD37 2
SNPs/Variants for CD63 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CD63 (up to first 250kb)
Disorders & Mutations for CD63
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 155740 10/23 Novoseek disease relationships for CD63 gene (see all 23
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hermansky-pudlak syndrome
79.49
5
7682577 (2), 1515640 (1)
platelet storage pool deficiency
69.09
1
1515640 (1)
melanoma
50.88
48
8630057 (6), 9120293 (5), 12740908 (2), 12150730 (2) (see all 20 )
metastatic melanoma
20.97
1
8219756 (1)
von willebrand disease
19.46
1
10203098 (1)
preeclampsia
14.02
5
8062509 (2), 15118653 (2)
metastasis
13.50
6
15375577 (2), 12480921 (1), 12740908 (1), 7665237 (1)
niddm
10.23
1
16093733 (1)
diphtheria
7.65
1
11235900 (1)
cancer
4.09
3
12740908 (1), 10515601 (1), 15375577 (1)
About this table
Medical News for CD63 (Possibly Related Articles in
Doctor's Guide )
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Publications for CD63 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/258 PubMed articles for CD63 gene (see all 258
): The protein CD63 is in platelet dense granules, is deficient in a patient with Hermansky-Pudlak syndrome, and appears identical to granulophysin. (PubMed id 7682577) 1, 3, 4 Nishibori M.... Gerrard J.M. (1993) An ocular melanoma-associated antigen. Molecular characterization. (PubMed id 1339263) 1, 3, 4 Wang M.X.... Donoso L.A. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. (PubMed id 12754519) 3, 4 Zhang H.... Aebersold R. (2003) Genomic structure of the ME491/CD63 antigen gene and functional analysis of the 5'-flanking regulatory sequences. (PubMed id 1599482) 3, 4 Hotta H.... Homma M. (1992) CD63 antigen. A novel lysosomal membrane glycoprotein, cloned by a screening procedure for intracellular antigens in eukaryotic cells. (PubMed id 1993697) 3, 4 Metzelaar M.J.... Clevers H.C. (1991) Characterization of three abundant mRNAs from human ovarian granulosa cells. (PubMed id 2171551) 3, 4 Rapp G....Scheit K.H. (1990) Molecular cloning and characterization of an antigen associated with early stages of melanoma tumor progression. (PubMed id 3365686) 3, 4 Hotta H.... Koprowski H. (1988) Isolation and amino terminal sequencing of a novel melanoma- associated antigen. (PubMed id 4062294) 3, 4 Ross A.H.... Koprowski H. (1985) CD82, and CD63 in thyroid cancer. (PubMed id 15375577) 1, 3 Chen Z....Hoang-Vu C. (2004)
Search for CD63
(in PubMed ,
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Genome Databases showing CD63
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CD63
(According to HUGE )
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--
Specialized Databases showing CD63 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CD63 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CD63:
Recombinant Proteins (CD63 ) Antibodies (CD63 )
Search Tocris compounds for CD63
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Aliases for CD63
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Drugs/Compounds for CD63
Expression for CD63
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Location for CD63
Medical News for CD63
Orthologs for CD63
Paralogs for CD63
Pathways/Interactions for CD63
Proteins for CD63
Publications for CD63
SNPs for CD63
Search Box for CD63
Services for CD63
Summaries for CD63
Technologies for CD63
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009