CD55 Gene
protein-coding GIFtS : 63
GC01P205561
CD55 molecule, decay accelerating factor for complement (Cromer blood group) (Previous names: decay accelerating factor for complement (CD55, Cromer blood group system) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: DAF )
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Aliases & Descriptions for CD55
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions CD55 antigen 2 , 3 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 2 decay accelerating factor for complement 2 decay accelerating factor for complement (CD55, Cromer blood group system) 1
Search outside databases for aliases for CD55 gene
Summaries for CD55 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CD55 : This gene encodes a protein involved in the regulation of the complement cascade. The encodedglycoprotein is also known as the decay-accelerating factor (DAF); binding of DAF to complementproteins accelerates their decay, disrupting the cascade and preventing damage to host cells.Antigens present on the DAF glycoprotein constitute the Cromer blood group system (CROM). Twoalternatively spliced transcripts encoding different proteins have been identified. Thepredominant transcript encodes a membrane-bound protein expressed on cells exposed to plasmacomponent proteins but an alternatively spliced transcript produces a soluble protein present atmuch lower levels. Additional, alternatively spliced transcript variants have been described, buttheir biological validity has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 Function : This protein recognizes C4b and C3b fragments that condense with cell-surface hydroxyl oramino groups when nascent C4b and C3b are locally generated during C4 and c3 activation.Interaction of daf with cell-associated C4b and C3b polypeptides interferes with their ability tocatalyze the conversion of C2 and factor B to enzymatically active C2a and Bb and thereby preventsthe formation of C4b2a and C3bBb, the amplification convertases of the complement cascade
Gene Wiki entry for CD55 (Decay_accelerating_factor)
Genomic Location for CD55
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CD55 gene Entrez Gene cytogenetic band: 1q32 Ensembl cytogenetic band: 1q32.2 HGNC cytogenetic band: 1q32 CD55 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P205561:
(about GC identifiers )
Start:
205,561,488 bp from pter
End:
205,600,934 bp from pter
Size:
39,447 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_021877.18 Proteins for CD55
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 (See
protein sequence )Recommended Name: Complement decay-accelerating factor precursor Size : 381 amino acids; 41400 Da
Subunit : Monomer (major form) and non-disulfide-linked, covalent homodimer (minor form). Binds tocoxsackievirus A21, coxsackieviruses B1, B3 and B5, human enterovirus 70, human echoviruses 6, 7,11, 12, 20 and 21 capsid proteins and acts as a receptor for these viruses
Subcellular location : Isoform 1: Membrane; Single-pass type I membrane protein
Subcellular location : Isoform 2: Cell membrane; Lipid-anchor, GPI-anchor
PDB structures from and Proteopedia : 1H03 (3D)
 1H04 (3D)
 1H2P (3D)
 1H2Q (3D)
 1M11 (3D)
 1NWV (3D)
 1OJV (3D)
 1OJW (3D)
 1OJY (3D)
 1OK1 (3D)
 1OK2 (3D)
 1OK3 (3D)
 1OK9 (3D)
 1UOT (3D)
 1UPN (3D)
 2C8I (3D)
 2QZD (3D)
 2QZF (3D)
 2QZH (3D)
 
Secondary accessions : P09679 P78361Alternative splicing : 2 isoforms : P08174-1 P08174-2
Post-translational modifications:
The Ser/Thr-rich domain is heavily O-glycosylated1
REFSEQ proteins (2 alternative transcripts):
NP_000565.1 NP_001108224.1 ENSEMBL proteins: ENSP00000316333 ENSP00000356032 ENSP00000356034 ENSP00000340631 ENSP00000375788 ENSP00000356031 ENSP00000375787 ENSP00000356030 ENSP00000356029 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CD55: Invitrogen Antibodies for CD55 Millipore Mono- and Polyclonal Antibodies for the study of CD55 Sigma-Aldrich Antibodies for CD55 R&D Systems Antibodies for CD55 (CD55/DAF) Antibodies from Abcam (CD55 ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (DAF ) Novus Biologicals Antibodies for CD55
Assays for CD55:
Protein
Domains/ Families for CD55(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P08174 ProtoNet protein and cluster: P08174
1 Blocks protein family : IPB000436 Sushi domain/SCR domain/CCP module UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 Domain : The first Sushi domain (SCR1) is not necessary for function. SCR2 and SCR4 provide theproper conformation for the active site on SCR3 (By similarity) Similarity : Belongs to the receptors of complement activation (RCA) familySimilarity : Contains 4 Sushi (CCP/SCR) domains
Gene Function for CD55
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000574 Applied Biosystems Silencer ® siRNAs for CD55 Sigma-Aldrich siRNA for CD55 Sigma-Aldrich shRNA for CD55 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000574                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000574                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000574  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001114752 UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 Function : This protein recognizes C4b and C3b fragments that condense with cell-surface hydroxyl oramino groups when nascent C4b and C3b are locally generated during C4 and c3 activation.Interaction of daf with cell-associated C4b and C3b polypeptides interferes with their ability tocatalyze the conversion of C2 and factor B to enzymatically active C2a and Bb and thereby preventsthe formation of C4b2a and C3bBb, the amplification convertases of the complement cascade
4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Cd55) : Pathways & Interactions for CD55
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for CD55 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CD55 5/38 Interacting proteins for CD55 (ENSP00000356030 3 ) via UniProtKB, MINT, and/or STRING (see all 38
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for CD55 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CD55 10/29 Novoseek chemical compound relationships for CD55 gene (see all 29
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
dafs
79.66
4
1700997 (1), 1712233 (1), 10906393 (1)
phosphatidylinositol
42.83
29
1702821 (2), 2182938 (1), 7691484 (1), 7527236 (1) (see all 13 )
glycolipid
42.17
10
7687624 (2), 1691902 (1), 7615819 (1), 7527603 (1) (see all 7 )
sucrose
14.12
7
19152664 (2), 12186694 (1), 1378912 (1), 10611479 (1) (see all 5 )
sialic acid
5.34
5
1716283 (2), 1702821 (1)
atp
5.31
2
7510241 (1), 19154662 (1)
fatty acid
5.06
1
1370460 (1)
iron
4.83
3
19036700 (1), 11930678 (1)
oligonucleotide
4.82
2
9648070 (1)
nitric oxide
1.42
6
15102803 (5)
About this table
Transcripts for CD55(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000574 Sigma-Aldrich siRNA for CD55 Sigma-Aldrich shRNA for CD55 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000574 NM_001114752
REFSEQ mRNAs for CD55 gene (2 alternative transcripts): NM_000574.3 NM_001114752.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000574 NM_001114752
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000574                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000574                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000574  
Additional cDNA sequence: AB240566.1 AB240567.1 AB240568.1 AB240569.1 AB240570.1 AF052110.1 AK298549.1 AK300621.1 AK312448.1 AY055757.1 AY055758.1 AY055759.1 AY055760.1 BC001288.1 BT007159.1 CR596368.1 CR596647.1 CR600235.1 CR603699.1 CR611789.1 CR613044.1 CR623902.1 CR624858.1 M15799.1 M30142.1 M31516.1 U88576.1
24/30 DOTS entries (see all 30
): DT.454114 DT.98083655 DT.100827194 DT.80100435 DT.100827202 DT.100827205 DT.75189288 DT.121461699 DT.92456135 DT.99931303 DT.121461669 DT.100827208 DT.121461696 DT.100827193 DT.92456145 DT.121461683 DT.97854983 DT.100827204 DT.121461679 DT.91677250 DT.100714519 DT.100809320 DT.100827192 DT.121461660
24/520 AceView cDNA sequences (see all 520
):H16044 BE049467 BQ221579 AL550277 AV703570 BQ231176 BC001288 CA843365 CR624858 BQ233015 BQ221490 BP353106 BP353891 CR596368 H56567 CB217037 BF665958 AF052110 CK822926 BP365936 CA748776 AI888485 CR600235 CR611789
highest scoring ESTs for CD55 :M31516 AA086067 AA112358 AA156547 AA186360 AA188660 AA190635 AA192424 AA216711 AA262302
Unigene Cluster for CD55: CD55 molecule, decay accelerating factor for complement (Cromer blood group) Hs.126517 [show with all ESTs ] Unigene Representative Sequence: NM_001114752 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for CD55 (see all 8
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 SP1 :       -   -               -           -     -         SP2 :                       -                       SP3 :                       -           -             SP4 :       -   -       -         -                       SP5 :                       -                      
About this scheme ECgene alternative splicing isoforms for CD55 9 Ensembl transcripts including schematic representations : ENST00000314754
ENST00000367065
ENST00000367067
ENST00000343420
ENST00000391921
ENST00000367064
ENST00000391920
ENST00000367063
ENST00000367062
Expression for CD55
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CD55 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CD55 1 / 2 / 3
7 probe-sets matching CD55 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAAACAAGASOURCE GeneReport for Unigene cluster: Hs.126517 UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 Tissue specificity : Expressed on the plasma membranes of all cell types that are in intimatecontact with plasma complement proteins. It is also found on the surfaces of epithelial cellslining extracellular compartments, and variants of the molecule are present in body fluids and inextracellular matrix
Orthologs for CD55
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CD55 gene from 4 species
About this table Species with no ortholog for CD55 ENSEMBL Gene Tree for CD55 Paralogs for CD55 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CD55 gene CR1L 2 CR2 2 C4BPA 2 CD46 2 CR1 2
SNPs/Variants for CD55 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: DAF_HUMAN, P08174 Polymorphism : Responsible for the Cromer blood group system. It consists of at least 8high-incidence (Cr(a), Tc(a), Dr(a), Es(a), WES(b), UMC, IFC and GUTI) and three low-incidence(Tc(b), Tc(c) and WES(a)) antigens that reside on DAF. In the Cromer phenotypes Dr(a-) and Inabthere is reduced or absent expression of DAF, respectively. In the case of the Dr(a-) phenotype, asingle nucleotide substitution within exon 5 accounts for two changes: a simple amino acidsubstitution, Leu-199 that is the basis of the antigenic variation, and an alternative splicingevent that underlies the decreased expression of DAF in this phenotype. The Inab phenotype is avery rare one in which the red blood cells lack all Cromer system antigens. The red blood cells ofindividuals with Inab phenotype have a deficiency of DAF, but these individuals are not known tohave any associated hematologic or other abnormalities
HapMap Linkage Disequilibrium images for CD55 (up to first 250kb)
Disorders & Mutations for CD55
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 125240
10/96 Novoseek disease relationships for CD55 gene (see all 96
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
paroxysmal hemoglobinuria nocturnal
92.04
37
19154662 (2), 1688570 (1), 9516159 (1), 1281489 (1) (see all 30 )
hemolysis
66.24
27
9203959 (2), 1378912 (2), 11881969 (2), 7691484 (1) (see all 18 )
anemia aplastic
58.28
4
7544152 (2), 7686037 (1), 11930678 (1)
hemoglobinuria
56.73
2
9844822 (1), 10539884 (1)
swine vesicular disease
49.15
1
15831949 (1)
anemia hemolytic
47.19
5
11930678 (1), 9892684 (1), 12213736 (1)
somatic mutations
42.55
2
18376800 (1), 7522635 (1)
anemia dyserythropoietic congenital
38.96
1
7506081 (1)
enterovirus infections
35.09
1
15507656 (1)
autoimmune hemolytic anemia
34.38
3
11930678 (1), 18954403 (1), 17289551 (1)
About this table Blood Group Antigen Gene Mutation Database (BGMUT) Cromer blood group system Human Gene Mutation Database : CD55 Human Genome Epidemiology Navigator: CD55 (3 documents)
Medical News for CD55 (Possibly Related Articles in
Doctor's Guide )
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Publications for CD55 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/565 PubMed articles for CD55 gene (see all 565
): Molecular basis of reduced or absent expression of decay-accelerating factor in Cromer blood group phenotypes. (PubMed id 7519480) 1, 3, 4 Lublin D.M.... Tanner M.J.A. (1994) Isolation of two forms of decay-accelerating factor (DAF) from human urine. (PubMed id 1712233) 1, 3, 4 Nakano Y.... Tomita M. (1991) Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol- anchored proteins released upon phospholipase D treatment. (PubMed id 16602701) 3, 4 Elortza F.... Jensen O.N. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complement regulation at the molecular level: the structure of decay- accelerating factor. (PubMed id 14734808) 3, 4 Lukacik P....Lea S.M. (2004) GUTI: a new antigen in the Cromer blood group system. (PubMed id 12675719) 3, 4 Storry J.R.... Reid M.E. (2003) Mapping CD55 function. The structure of two pathogen-binding domains at 1.7 A. (PubMed id 12499389) 3, 4 Williams P.... Lea S. (2003) Solution structure of a functionally active fragment of decay- accelerating factor. (PubMed id 12672958) 3, 4 Uhrinova S....Barlow P.N. (2003) Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. (PubMed id 14517339) 3, 4 Elortza F....Jensen O.N. (2003) Decay-accelerating factor CD55 is identified as the receptor for echovirus 7 using CELICS, a rapid immuno-focal cloning method. (PubMed id 7525274) 3, 4 Ward T....Almond J.W. (1994)
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dbRBC/BGMUT http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/systems_info&system=cromer CD55base http://bioinf.uta.fi/CD55base/ Wikipedia http://en.wikipedia.org/wiki/Decay_accelerating_factor SeattleSNPs http://pga.gs.washington.edu/data/daf/ Virus Particle ExploreR db http://viperdb.scripps.edu/info_page.php?VDB=1upn
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-- Services for CD55 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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