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Aliases for CD44-AS1 Gene

Subcategory (RNA class) for CD44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CD44-AS1 Gene

  • CD44 Antisense RNA 1 2 3 5

External Ids for CD44-AS1 Gene

Summaries for CD44-AS1 Gene

GeneCards Summary for CD44-AS1 Gene

CD44-AS1 (CD44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CD44-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD44-AS1 Gene

Genomics for CD44-AS1 Gene

Regulatory Elements for CD44-AS1 Gene

Enhancers for CD44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H035661 1.2 ENCODE 12.4 -447.9 -447920 2 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 TRAF6 ENSG00000251194 CD44-AS1 COMMD9 TRIM44 GC11M035597
GH11H035211 1.3 Ensembl ENCODE dbSUPER 6.7 -1.1 -1076 8 FOXA2 INSM2 RAD21 YY1 FOS CEBPB MAFF GLIS1 CEBPA STAT3 MIR1343 APIP PDHX CD44-AS1 ENSG00000255004
GH11H035222 0.7 ENCODE dbSUPER 5.8 -8.5 -8492 2 MXI1 POLR2A RCOR1 MIR1343 APIP PDHX CD44-AS1 CD44 ENSG00000255004
GH11H035206 0.4 dbSUPER 9.7 +6.4 6432 3 POLR2A CD44-AS1 GC11P035210 CD44
GH11H035200 0.5 dbSUPER 6.2 +14.2 14241 1 POLR2A ELF1 RUNX3 CD44-AS1 GC11P035210 CD44
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CD44-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CD44-AS1 Gene

Chromosome:
11
Start:
35,210,343 bp from pter
End:
35,214,985 bp from pter
Size:
4,643 bases
Orientation:
Minus strand

Genomic View for CD44-AS1 Gene

Genes around CD44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CD44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CD44-AS1 Gene

Proteins for CD44-AS1 Gene

Post-translational modifications for CD44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD44-AS1 Gene

Domains & Families for CD44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CD44-AS1 Gene

Function for CD44-AS1 Gene

Phenotypes From GWAS Catalog for CD44-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD44-AS1 Gene

Localization for CD44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD44-AS1 Gene

Pathways & Interactions for CD44-AS1 Gene

SuperPathways for CD44-AS1 Gene

No Data Available

Interacting Proteins for CD44-AS1 Gene

Gene Ontology (GO) - Biological Process for CD44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CD44-AS1 Gene

Drugs & Compounds for CD44-AS1 Gene

No Compound Related Data Available

Transcripts for CD44-AS1 Gene

mRNA/cDNA for CD44-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CD44-AS1 Gene

No ASD Table

Relevant External Links for CD44-AS1 Gene

GeneLoc Exon Structure for
CD44-AS1
ECgene alternative splicing isoforms for
CD44-AS1

Expression for CD44-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD44-AS1 Gene

Orthologs for CD44-AS1 Gene

Evolution for CD44-AS1 Gene

ENSEMBL:
Gene Tree for CD44-AS1 (if available)
TreeFam:
Gene Tree for CD44-AS1 (if available)

No data available for Orthologs for CD44-AS1 Gene

Paralogs for CD44-AS1 Gene

No data available for Paralogs for CD44-AS1 Gene

Variants for CD44-AS1 Gene

Relevant External Links for CD44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CD44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CD44-AS1 Gene

Disorders for CD44-AS1 Gene

No disorders were found for CD44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CD44-AS1 Gene

Publications for CD44-AS1 Gene

  1. Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma. (PMID: 28103885) Zhou M … Sun J (Molecular cancer 2017) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CD44-AS1 Gene

Sources for CD44-AS1 Gene

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