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Aliases & Descriptions for CD38
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.2.2.5 3 | | T10 2, 3 |
| | | Descriptions |
|---|
| ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 | | CD38 antigen 2, 3 | | CD38 antigen (p45) 1, 2 | | CD38 molecule 2 | | Cyclic ADP-ribose hydrolase 1 3 | | cADPr hydrolase 1 3 | | cyclic ADP-ribose hydrolase 2 |
|
| | Search outside databases for aliases for CD38 genePrevious GC identifers: GC04P015595 GC04P015722 GC04P015468 GC04P015530 |
Summaries for CD38(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CD38: CD38 is a novel multifunctional ectoenzyme widely expressed in cells and tissues especially in leukocytes. CD38 also functions in cell adhesion,signal transduction and calcium signaling. [provided by RefSeq] UniProtKB/Swiss-Prot: CD38_HUMAN, P28907Function: Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune systemGene Wiki entry for CD38 |
Genomic Location for CD38
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CD38 gene 
Entrez Gene cytogenetic band: 4p15 Ensembl cytogenetic band: 4p15.32 HGNC cytogenetic band: 4p15.32CD38 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P015457:
(about GC identifiers)
Start:
|
15,389,029 bp from pter |
End:
|
15,459,806 bp from pter |
Size:
|
70,778 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_006316.15
| Proteins for CD38
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CD38_HUMAN, P28907 (See
protein sequence)Recommended Name: ADP-ribosyl cyclase 1 Size: 300 amino acids; 34328 Da
Subcellular location: Membrane; Single-pass type II membrane protein
Developmental stage: Preferentially expressed at both early and late stages of the B and T-cell maturation. It is also detected on erythroid and myeloid progenitors in bone marrow, where the level of surface expression was shown to decrease during differentiation of blast-forming unit E to colony-forming unit E
PDB structures from and Proteopedia :1YH3 (3D)
 1ZVM (3D)
 2EF1 (3D)
 2HCT (3D)
 2I65 (3D)
 2I66 (3D)
 2I67 (3D)
 2O3Q (3D)
 2O3R (3D)
 2O3S (3D)
 2O3T (3D)
 2O3U (3D)
 2PGJ (3D)
 2PGL (3D)
 3DZF (3D)
 3DZG (3D)
 3DZH (3D)
 3DZI (3D)
 3DZJ (3D)
 3DZK (3D)
 3F6Y (3D)
 
Secondary accessions: O00121 O00122 Q96HY4Alternative splicing: 2 isoforms: P28907-1 P28907-2 REFSEQ proteins: NP_001766.2
ENSEMBL proteins: ENSP00000226279
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CD38: Assays for CD38: | Protein
Domains/ Families for CD38(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P28907
ProtoNet protein and cluster: P28907 1 Blocks protein family: IPB003193 ADP-ribosyl cyclase (CD38/157)
UniProtKB/Swiss-Prot: CD38_HUMAN, P28907Similarity: Belongs to the ADP-ribosyl cyclase family | Gene Function for CD38
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001775
Applied Biosystems Silencer® siRNAs for CD38
Sigma-Aldrich siRNA and siRNA Panels for CD38  Sigma-Aldrich shRNA Panels and shRNA for CD38  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001775                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001775                                  untagged cDNA clone in CMV expression vector: NM_001775 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001775
UniProtKB/Swiss-Prot: CD38_HUMAN, P28907Function: Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune systemCatalytic activity: NAD(+) + H(2)O = ADP-ribose + nicotinamideEnzyme regulation: ATP inhibits the hydrolyzing activityEnzyme Number (IUBMB): EC 3.2.2.5 Genatlas biochemistry entry for CD38:cell differentiation antigen CD38 (T10),45kDa,membrane glycoprotein,integral,identified by monoclonal antibody OKT10,HB-7,homolog to Aplysia ADRC gene,involved in insulin secretion through mobi-calcium of mobilisation5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Cd38):
5 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003953 | NAD+ nucleosidase activity |
IEA | -- | | GO:0004872 | receptor activity |
IEA | -- | | GO:0005488 | binding |
IEA | -- | | GO:0016798 | hydrolase activity, acting on glycosyl bonds |
IEA | -- | | GO:0016849 | phosphorus-oxygen lyase activity |
IEA | -- | About this table | Pathways & Interactions for CD38
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for CD38 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CD38 
5/109 Interacting proteins for CD38 (ENSP000002262793) via UniProtKB, MINT, and/or STRING (see all 109
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for CD38(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CD38 10/22 Novoseek chemical compound relationships for CD38 gene (see all 22
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cyclic adp-ribose |
94.40 |
192 |
8630392 (5), 9020087 (5), 8530408 (4), 9386892 (4) (see all 61) |
| nicotinamide guanine dinucleotide |
79.61 |
3 |
7982936 (1), 12514117 (1) |
| nad+ |
79.31 |
72 |
9148900 (4), 10477767 (3), 12203397 (3), 7869031 (2) (see all 37) |
| naadp |
76.13 |
12 |
16861223 (4), 8701086 (1), 9193683 (1), 18581239 (1) (see all 5) |
| naad |
57.89 |
1 |
15505998 (1) |
| nadp+ |
43.90 |
6 |
8530456 (2), 8701086 (1), 10369916 (1), 18835239 (1) (see all 5) |
| ryanodine |
38.28 |
4 |
14596927 (3), 15718277 (1) |
| calcium |
30.48 |
39 |
12514117 (3), 8530408 (2), 19117080 (2), 18441094 (2) (see all 26) |
| neopterin |
23.78 |
2 |
9358102 (1), 9008283 (1) |
| tgf beta1 |
14.03 |
2 |
17027281 (2) |
About this table
|
Transcripts for CD38(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001775
Sigma-Aldrich siRNA and siRNA Panels for CD38  Sigma-Aldrich shRNA Panels and shRNA for CD38  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001775 REFSEQ mRNAs for CD38 gene: NM_001775.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001775               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001775                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001775                                  untagged cDNA clone in CMV expression vector: NM_001775  Additional cDNA sequence: AK297592.1 AK303169.1 AK313268.1 BC007964.2 CR606718.1 CR610722.1 CR626710.1 D84276.1 D84277.1 M34461.1 7 DOTS entries: DT.440888 DT.95266841 DT.40240101 DT.86849240 DT.121251299 DT.414249 DT.433709 24/67 AceView cDNA sequences (see all 67
):BC007964 AI052656 AI989354 BP338873 CR610722 BQ056610 AW059605 F07918 BP368495 F04175 BM909571 D84277 AA814783 CR606718 CR626710 D84276 BF513368 M34461 BX098811 CB957711 BX383465 CD688069 BX363630 BF941625
highest scoring ESTs for CD38:D84276 AA213567 AA291308 AA318583 AA417096 AA748192 AA765500 AA766375 AA828478 AI052656 Unigene Cluster for CD38: CD38 molecule Hs.479214 [show with all ESTs]Unigene Representative Sequence: BF790785
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000226279
|
Expression for CD38
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CD38 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CD38
1 / 2 / 3 3 probe-sets matching CD38 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.479214
Expression variation in blood from EXPOLDB for CD38 UniProtKB/Swiss-Prot: CD38_HUMAN, P28907Tissue specificity: Expressed at high levels in pancreas, liver, kidney, brain, testis, ovary, placenta, malignant lymphoma and neuroblastoma |
Orthologs for CD38
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CD38 gene from 5 species
About this table Species with no ortholog for CD38
ENSEMBL Gene Tree for CD38 | Paralogs for CD38(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CD38 gene
- BST12
|
SNPs/Variants for CD38(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CD38 (up to first 250kb)
|
Disorders & Mutations for CD38
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 107270
10/35 Novoseek disease relationships for CD38 gene (see all 35
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| lymphocytic leukemia chronic b-cell |
86.09 |
30 |
15759031 (2), 16208411 (2), 19240243 (2), 12673718 (2) (see all 20) |
| leukemia lymphocytic chronic |
83.68 |
30 |
12149224 (2), 18424664 (2), 18287138 (2), 16621959 (2) (see all 23) |
| leukaemia lymphocytic |
62.74 |
10 |
16932341 (2), 12181042 (2), 16825496 (1), 18674817 (1) (see all 8) |
| leukemia |
49.33 |
11 |
8663150 (1), 11528102 (1), 17654680 (1), 12139742 (1) (see all 11) |
| myeloma |
45.60 |
5 |
8187346 (1), 10923440 (1), 1592363 (1), 18626062 (1) (see all 5) |
| chromosomal aberrations |
43.59 |
12 |
18457263 (2), 16529606 (2), 16856923 (1), 16388316 (1) (see all 10) |
| trisomy |
43.00 |
3 |
18689273 (1), 12149195 (1), 12688180 (1) |
| hiv infections |
42.81 |
7 |
9358102 (2), 8671648 (1), 1418775 (1), 8809474 (1) (see all 5) |
| myeloid leukemia |
36.05 |
4 |
7511050 (2), 10048416 (1), 7690555 (1) |
| leukemia prolymphocytic |
35.77 |
1 |
16642047 (1) |
About this table
Human Gene Mutation Database: CD38 Genetic Association Database: CD38 Human Genome Epidemiology Navigator: CD38 (15 documents)
|
Medical News for CD38(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for CD38 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/361 PubMed articles for CD38 gene (see all 361
):- Human gene encoding CD38 (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase): organization, nucleotide sequence and alternative splicing. (PubMed id 9074508)1, 2, 3, 4 Nata K.... Okamoto H. (1997)
- Isolation of a cDNA encoding the human CD38 (T10) molecule, a cell surface glycoprotein with an unusual discontinuous pattern of expression during lymphocyte differentiation. (PubMed id 2319135)1, 2, 3, 4 Jackson D.G. and Bell J.I. (1990)
- A missense mutation in the CD38 gene, a novel factor for insulin secretion: association with Type II diabetes mellitus in Japanese subjects and evidence of abnormal function when expressed in vitro. (PubMed id 9754820)1, 3, 4, 6 Yagui K.... Kanatsuka A. (1998)
- CD38 polymorphisms in Spanish patients with systemic lupus erythematosus. (PubMed id 15219386)1, 3, 6 Gonzalez-Escribano M.F....Nunez-Roldan A. (2004)
- CD38 is associated with premenopausal and postmenopausal bone mineral density and postmenopausal bone loss. (PubMed id 16369895)3, 6 Drummond F.J....Molloy M.G. (2006)
- Crystal structure of human CD38 extracellular domain. (PubMed id 16154090)3, 4 Liu Q.... Hao Q. (2005)
- An unappreciated role for RNA surveillance. (PubMed id 14759258)3, 4 Hillman R.T.... Brenner S.E. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Autoimmunity to CD38 and GAD in Type I and Type II diabetes: CD38 and HLA genotypes and clinical phenotypes. (PubMed id 12242463)3, 6 Antonelli A....Ferrannini E. (2002)
- Essential cysteine residues for cyclic ADP-ribose synthesis and hydrolysis by CD38. (PubMed id 7961800)3, 4 Tohgo A.... Okamoto H. (1994)
|
Search for CD38
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CD38
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CD38
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CD38(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| Licensable Technologies for CD38 gene:
| Services for CD38(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CD38:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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