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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CD302 Gene

protein-coding GIFtS: 44
GCID: GC02M160625

CD302 Molecule

(Previous name: CD302 antigen)

4 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
CD302 Molecule¹ ²		C-Type Lectin Domain Family 13¹
CD302 Antigen¹ ² ³		Member A¹
DCL1² ³ ⁵		BIMLEC²
Type I Transmembrane C-Type Lectin Receptor DCL-1² ³		DCL-1²
CLEC13A² ³		C-Type Lectin Domain Family 13, Member A²
DEC205-Associated C-Type Lectin 1² ³		C-Type Lectin BIMLEC³
KIAA0022³ ⁵		C-Type Lectin Domain Family 13 Member A³

External Ids:	HGNC: 30843¹	Entrez Gene: 9936²	Ensembl: ENSG00000241399⁷	OMIM: 612246⁵	UniProtKB: Q8IX05³

Export aliases for CD302 gene to outside databases

Previous GC identifers: GC02M160451 GC02M160333 GC02M152509

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CD302 Gene:

CD302 is a C-type lectin receptor involved in cell adhesion and migration, as well as endocytosis and phagocytosis

(Kato et al., 2007 (PubMed 17947679)).(supplied by OMIM, Aug 2008)

GeneCards Summary for CD302 Gene:

CD302 (CD302 molecule) is a protein-coding gene. Diseases associated with CD302 include hodgkin's lymphoma, and hepatitis b. GO annotations related to this gene include carbohydrate binding.

UniProtKB/Swiss-Prot: CD302_HUMAN, Q8IX05

Function: Potential multifunctional C-type lectin receptor that may play roles in endocytosis and phagocytosis as well

as in cell adhesion and migration

Gene Wiki entry for CD302 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000002.11 NT_005403.17 NC_018913.2

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CD302 gene promoter:
TBP Pbx1a LUN-1 CUTL1 C/EBPalpha FAC1 POU2F1 POU2F1a IRF-7A En-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CD302 promoter sequence

Search SABiosciences Chromatin IP Primers for CD302

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CD302

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q24.2 Ensembl cytogenetic band: 2q24.2 HGNC cytogenetic band: 2q24.2

CD302 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CD302 gene location

GeneLoc information about chromosome 2 GeneLoc Exon Structure

GeneLoc location for GC02M160625: view genomic region (about GC identifiers)

Start:	160,625,139 bp from pter	End:	160,654,766 bp from pter
Size:	29,628 bases	Orientation:	minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CD302_HUMAN, Q8IX05 (See protein sequence)

Recommended Name: CD302 antigen precursor

Size: 232 amino acids; 26183 Da

Subcellular location: Membrane; Single-pass type I membrane protein (Potential). Cell projection, filopodium.

Cytoplasm, cell cortex. Cell projection, microvillus. Note=Colocalizes with F-actin in filopodia, cellular cortex and

microvilli of the apical cell surface

Developmental stage: Expressed at relatively high levels in fetal lung, liver, spleen and kidney with lower expression

levels detected in heart, thymus and brain

Miscellaneous: Isoform 2 and isoform 3 are produced in HRS cells by a transcriptional control mechanism which

cotranscribe an mRNA containing LY75 and CD302 prior to generating the intergenically spliced mRNA to produce

LY75/CD302 fusion proteins

Secondary accessions: A8K5G4 B4E2T9 Q15009

Alternative splicing: 5 isoforms: Q8IX05-1 O60449-1 Q8IX05-2 O60449-2 O60449-3 (Produced by intergenic splicing of LY75 and CD302)

Explore the universe of human proteins at neXtProt for CD302: NX_Q8IX05

Explore proteomics data for CD302 at MOPED

Post-translational modifications:

UniProtKB: May be heterogeneously N-glycosylated in some cell types

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_Q8IX05

CD302 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins (3 alternative transcripts):

NP_001185692.1 NP_001185693.1 NP_055695.2

ENSEMBL proteins:

ENSP00000259053 ENSP00000394301

Human Recombinant Protein Products for CD302:

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Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005902	microvillus	IEA	--
GO:0005938	cell cortex	IDA	17947679
GO:0016021	integral to membrane	IEA	--
GO:0030175	filopodium	IDA	17947679

CD302 for ontologies About GeneDecksing

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

CD: CD molecules

CLEC: C-type lectin domain containing

3 InterPro protein domains:

IPR016187 C-type_lectin_fold

IPR016186 C-type_lectin-like

IPR001304 C-type_lectin

Graphical View of Domain Structure for InterPro Entry Q8IX05

ProtoNet protein and cluster: Q8IX05

UniProtKB/Swiss-Prot: CD302_HUMAN, Q8IX05

Similarity: Contains 1 C-type lectin domain

CD302 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: CD302_HUMAN, Q8IX05

Function: Potential multifunctional C-type lectin receptor that may play roles in endocytosis and phagocytosis as well

as in cell adhesion and migration

Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0030246	carbohydrate binding	IEA	--

CD302 for ontologies About GeneDecksing

Animal Models:

inGenious Targeting Laboratory - Custom generated mouse model solutions for CD302

inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CD302

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		SwitchGear 3'UTR luciferase reporter plasmid: CD302 3' UTR sequence

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD302

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for CD302

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006909	phagocytosis	IDA	17947679

CD302 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CD302

Search CenterWatch for drugs/clinical trials and news about CD302

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CD302 gene (3 alternative transcripts):

NM_001198763.1 NM_001198764.1 NM_014880.4

Unigene Cluster for CD302:

CD302 molecule

Hs.130014 [show with all ESTs]

Unigene Representative Sequence: NM_014880

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000259053(uc002uba.3 uc021vrt.1 uc010zco.2) ENST00000480212

ENST00000429078

miRNA Products:
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		8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate CD302 (see all 9):
		hsa-miR-3163 hsa-miR-3690 hsa-miR-607 hsa-miR-548p hsa-miR-4282 hsa-miR-744* hsa-miR-33a hsa-miR-3927

		SwitchGear 3'UTR luciferase reporter plasmid: CD302 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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Additional mRNA sequence:

AF499000.1 AK291279.1 AK304422.1 AY314007.1 BC020646.1 D14664.1

6 DOTS entries:

DT.75180760 DT.95075642 DT.416796 DT.120993629 DT.99960501 DT.120993672

24/253 AceView cDNA sequences (see all 253):

BF002778 AW517147 BM142267 BX103829 H95804 BE047310 BI966750 AU185108

H60460 BE464368 AY184222 BM354053 AW949721 AI984719 F04414 AI827135

BI027069 AA279284 R47380 BG057185 D57572 AI621101 AA364840 CB122654

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CD302 expression in normal human tissues (normalized intensities) CD302 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: --

About this image

CD302 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/3 selected tissues (see all 3) fully expand


Lung (Respiratory System)
Alveolar type II cells

Liver (Hepatobiliary System)
Hepatocyte-like cells (Generation of hepatocyte-like cells from human pluripotent...

Adipose (Muscoskeletal System)
White adipocyte-like cells (Differentiation of human pluripotent stem cells into...

-- (Respiratory System)
trachea

See CD302 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CD302

SOURCE GeneReport for Unigene cluster: Hs.130014

UniProtKB/Swiss-Prot: CD302_HUMAN, Q8IX05

Tissue specificity: Expressed at moderate levels in monocytes, myeloid blood dendritic cells and granulocytes and at

low levels in plasmacytoid blood dendritic cells, monocyte-derived ma crophages and monocyte-derived dendritic cells,

with no expression detected in T-lymphocytes, B-lymphocytes and natural killer cells (at protein level). Expressed

widely in different tissues, with highest expression levels in liver, lung, peripheral blood leukocytes and spleen,

and lowest levels in neuronal tissues, skeletal muscle and ovary. Isoform 2 and isoform 3 are expressed in malignant

Hodgkin lymphoma cells called Hodgkin and Reed-Sternberg (HRS) cells

SABiosciences Custom PCR Arrays for CD302

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CD302 gene from 3/6 species (see all 6) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Cd302^{1 , 5}	CD302 antigen^{1, 5}	82.65(n)¹ 75.8(a)¹		2 (34.50 cM)⁵ 66205¹ NM_025422.3¹ NP_079698.2¹ 60251993⁵
lizard (Anolis carolinensis)	Reptilia	CD302⁶	Uncharacterized protein	42(a)	1 ↔ 1	GL343371.1(922319-927341)
zebrafish (Danio rerio)	Actinopterygii	LOC100333685¹	CD302 antigen-like	48.35(n) 35.64(a)		100333685 XM_002667634.2 XP_002667680.1

ENSEMBL Gene Tree for CD302 (if available)
TreeFam Gene Tree for CD302 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Clinical significance	Chr 2 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
VAR_050101⁴	--	--	see VAR_050101	2	R S	mis⁴		0	--	--	--	--

HapMap Linkage Disequilibrium report for CD302 (160625139 - 160654766 bp)

Structural Variations
Database of Genomic Variants (DGV) 5 variations for CD302: About this table

Variant ID	Type	Subtype	PubMed ID
esv1001679	CNV	Deletion	20482838
nsv470497	CNV	Loss	18288195
dgv4351n71	CNV	Loss	21882294
nsv875344	CNV	Loss	21882294
nsv834436	CNV	Loss	17160897

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CD302 for disorders           About GeneDecksing

OMIM gene information: 612246    OMIM disorders: --

4 diseases for CD302:    About MalaCards

hodgkin's lymphoma hepatitis b hepatitis neuronitis

Human Genome Epidemiology (HuGE) Navigator: CD302 (1 document)

Export disorders for CD302 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for CD302 gene, integrated from 9 sources (see all 15):
(articles sorted by number of sources associating them with CD302)

Utopia: connect your pdf to the dynamic
world of online information

Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1. (PubMed id 7584026)^{1, 2, 3} Nomura N.... Tabata S. (1994)
Hodgkin's lymphoma cell lines express a fusion protein encoded by intergenically spliced mRNA for the multilectin receptor DEC-205 (CD205) and a novel C-type lectin receptor DCL-1. (PubMed id 12824192)^{1, 2, 9} Kato M.... Hart D.N.J. (2003)
The novel endocytic and phagocytic C-Type lectin receptor DCL-1/CD302 on macrophages is colocalized with F-actin, suggesting a role in cell adhesion and migration. (PubMed id 17947679)^{1, 2, 9} Kato M....Hart D.N. (2007)
Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)^{1, 2} Hillier L.W....Wilson R.K. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Prediction of the coding sequences of unidentified hu man genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell li ne KG-1 (supplement). (PubMed id 7584028)^{1, 3} Nomura N....Tabata S. (1994)
New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)¹ Davila S....Seielstad M. (2010)
DLC1 negatively regulates angiogenesis in a paracrine fashion. (PubMed id 20861185)¹ Shih Y.P....Lo S.H. (2010)
The dynamic interaction of AMBRA1 with the dynein mot or complex regulates mammalian autophagy. (PubMed id 20921139)¹ Di Bartolomeo S....Fimia G.M. (2010)
Characterization of DLC1-SAM equilibrium unfolding at the amino acid residue level. (PubMed id 19317456)¹ Yang S....Yang D. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 9936	HGNC: 30843	AceView: LY75andDCL-1	Ensembl:ENSG00000241399	euGenes: HUgn9936
ECgene: CD302	H-InvDB: CD302

(According to HUGE)
About This Section

HUGE: KIAA0022

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CD302	Pharmacogenomics, SNPs, Pathways

Intellectual Property for CD302 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for CD302 gene:
Search GeneIP for patents involving CD302

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section


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	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CD302
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	GenScript Custom Purified and Recombinant Proteins Services for CD302		GenScript cDNA clones with any tag delivered in your preferred vector for CD302
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ThermoFisher Antibodies for CD302

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CD302

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LSBio Antibodies in human, mouse, rat for CD302

GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013

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Category			TGFB1 (GIFtS: 73) transforming growth factor, beta 1
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CD302 Gene

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