CD300E Gene
protein-coding GIFtS : 48
GCID: GC17 M072606
CD300e molecule (Previous names: CD300 antigen like family member E, CD300e antigen ) (Previous symbol: CD300LE )
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Aliasesfor CD300E gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases CD300e Molecule 1 2 CLM-22 3 CD300LE1 2 3 5 CMRF35-A52 3 CLM21 2 3 5 IREM-22 3 IREM21 2 3 5 PIgR-22 3 CD300e Antigen1 2 3 PIgR22 3 CD300 Antigen Like Family Member E1 2 CD300 Antigen-Like Family Member E2 3 Immune Receptor Expressed On Myeloid Cells 22 3 CMRF35-Like Molecule 22 Poly-Ig Receptor 22 3 CMRF35A53 Polymeric Immunoglobulin Receptor 22 3
Export aliases for CD300E gene to outside databases Previous GC identifers: GC17M070119 GC17M068017
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Summariesfor CD300E gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CD300E : This gene encodes a member of the CD300 glycoprotein family of cell surface proteins expressed on myeloid cells. The protein interacts with the TYRO protein tyrosine kinase-binding protein and is thought to act as an activating receptor. (provided by RefSeq, Nov 2012) UniProtKB/Swiss-Prot: CLM2_HUMAN, Q496F6 Function : Probably acts as an activating receptor
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Genomic Viewsfor CD300E gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010783.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CD300E gene promoter: TBP USF1 NRSF form 1 USF2 USF-1:USF-2 NRSF form 2 E47 TFIID USF-1 Hand1 Other transcription factors Search SABiosciences Chromatin IP Primers for CD300E Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CD300E
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q25.1 Ensembl cytogenetic band: 17q25.1 HGNC cytogenetic band: 17q25.1 CD300E Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M072606: view genomic region
(about GC identifiers )
Start:
72,606,026 bp from pter
End:
72,619,897 bp from pter
Size:
13,872 bases
Orientation:
minus strand
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Proteinsfor CD300E gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CLM2_HUMAN, Q496F6 (See
protein sequence )Recommended Name: CMRF35-like molecule 2 precursor Size : 205 amino acids; 22918 Da
Subunit : Interacts with TYROBP
Subcellular location : Cell membrane; Single-pass type I membrane protein
Secondary accessions : B4DNS1 Q7Z7I3Explore the universe of human proteins at neXtProt for CD300E: NX_Q496F6 Post-translational modifications:
N-glycosylated1
View neXtProt modification sites for NX_Q496F6 CD300E Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_852114.2 ENSEMBL proteins: ENSP00000376395 ENSP00000415488 ENSP00000416642 ENSP00000329942 Reactome Protein details: Q496F6 Human Recombinant Protein Products for CD300E: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
IEA -- GO:0016021 integral to membrane
IEA --
CD300E for ontologies About GeneDecksing CD300E Antibody Products: Assay Products for CD300E:
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Protein
Domains / Familiesfor CD300E gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CD300E for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q496F6 ProtoNet protein and cluster: Q496F6
UniProtKB/Swiss-Prot: CLM2_HUMAN, Q496F6 Similarity : Belongs to the CD300 familySimilarity : Contains 1 Ig-like V-type (immunoglobulin-like) domain
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Functionfor CD300E gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: CLM2_HUMAN, Q496F6 Function : Probably acts as an activating receptor
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004872 receptor activity
-- --
CD300E for ontologies About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CD300E (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CD300EOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CD300E (NM_181449 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CD300E Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CD300E
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD300E
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Pathways & Interactionsfor CD300E gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Immune System 2 Signaling by FGFR
Pathway sources See GeneCards unified pathways Show all pathways 3
Reactome Pathways for CD300E
CD300E for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CD300E STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for CD300E (ENSP00000329942 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor CD300E gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CD300E Search CenterWatch for drugs/clinical trials and news about CD300E / CLM2
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Transcriptsfor CD300E gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CD300E gene: NM_181449.2 Unigene Cluster for CD300E:
CD300e molecule Hs.158954 [show with all ESTs ] Unigene Representative Sequence: BX648376 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000392619 (uc002jlb.2 ) ENST00000412268 ENST00000426295 ENST00000328630 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CD300E (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CD300EOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CD300E (NM_181449 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CD300E Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CD300E
Additional cDNA sequence: AF395839.1 AK298031.1 AK303545.1 BC100888.1 BC100889.1 BC100890.1 BX648376.1
1 DOTS entry : DT.75161866
17 AceView cDNA sequences :
CN479411 BM993876 BX648376 CA449920 AF395839 BU681667 NM_181449 BX112992 BV194694 AL598315 AI380107 BX478972 AI889065 CB528671 BF359799 BI060884 BI061023 GeneLoc Exon Structure
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Expression for CD300E gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CD300E expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTTTGAATTTAbout this image CD300E expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
Stem Cell Differentiation: 1 LifeMap Cell Name Category Definitive endoderm-like cells (A scalable, suspensi... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See CD300E Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.158954 UniProtKB/Swiss-Prot: CLM2_HUMAN, Q496F6 Tissue specificity : Present on the surface of mature hematopoietic cells of the monocyte and myeloid lineages (atprotein level) SABiosciences Custom PCR Arrays for CD300E Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CD300EBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CD300E QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CD300E QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CD300E In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD300E
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Orthologsfor CD300E gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for CD300E gene from 3/9 species (see all 9 ) About this table
ENSEMBL Gene Tree for CD300E (if available)TreeFam Gene Tree for CD300E (if available)
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Paralogsfor CD300E gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CD300E gene CD300LG 2 CD300A 2 CD300LB 2 CD300C 2 CD300LF 2 CD300LD 2 7 SIMAP similar genes for CD300E using alignment to 4 protein entries: CLM2_HUMAN (see all proteins ):CD300C CD300LB CD300LD ADORA3 CD300LF CD300LG CD300A
CD300E for paralogs About GeneDecksing
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Genomic Variantsfor CD300E gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CD300E (72606026 - 72619897 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 5 variations for CD300E 5 CNVs : 102532 34522 8852 53066 7171
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CD300E
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Disorders
/ Diseasesfor CD300E gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CD300E for disorders About GeneDecksing
OMIM gene information: 609801
OMIM disorders : --5 diseases for CD300E : About MalaCards lice infestation tungiasis scabies osteoporosis psoriasis 3 diseases from the University of Copenhagen DISEASES database for CD300E :Tungiasis Scabies Lice infestation Human Genome Epidemiology (HuGE) Navigator: CD300E (1 document)Export disorders for CD300E gene to outside databases
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Publicationsfor CD300E gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CD300E gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with CD300E) Utopia : connect your pdf to the dynamic world of online information
Molecular characterization of a novel immune receptor restricted to the monocytic lineage. (PubMed id 15557162) 1 , 2 , 3 Aguilar H....Lopez-Botet M. (2004) IREM-1 is a novel inhibitory receptor expressed by myeloid cells. (PubMed id 15549731) 1 , 3 Alvarez-Errico D....Lopez-Botet M. (2004) Functional analysis of the CD300e receptor in human m onocytes and myeloid dendritic cells. (PubMed id 20039296) 1 Brckalo T....LA^pez-Botet M. (2010) Genome-wide pleiotropy of osteoporosis-related phenot ypes: The Framingham study. (PubMed id 20200953) 1 Karasik D....Demissie S. (2010) The CD300 molecules regulate monocyte and dendritic c ell functions. (PubMed id 19592130) 1 Clark G.J....Hart D.N. (2009) The CD300 family of molecules are evolutionarily sign ificant regulators of leukocyte functions. (PubMed id 19359216) 1 Clark G.J....Hart D.N. (2009) The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974) 2 Sjoeblom T.... Velculescu V.E. (2006) DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196) 2 Zody M.C.... Nusbaum C. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004)
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External Searches for CD300E gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CD300E gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CD300E gene
(According to HUGE )
About This Section --
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Specialized Databases showing CD300E gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CD300E Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CD300E gene: Search GeneIP for patents involving CD300E GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CD300E gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CD300E OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CD300E OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CD300E OriGene Protein Over-expression Lysate for CD300E Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CD300E OriGene 3'-UTR Clone for CD300E OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CD300E OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CD300E Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CD300E OriGene Custom Protein Services for CD300E OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CD300E QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CD300E QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CD300E QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CD300E QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CD300E QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CD300E
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CD300E Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD300E
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CD300E
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Aliases for CD300E
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Disorders / Diseases for CD300E
Domains / Families for CD300E
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Expression for CD300E
Function for CD300E
Genomic Views for CD300E
Intellectual Property for CD300E
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Pathways / Interactions for CD300E
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Transcripts for CD300E
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