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Aliases for CD27-AS1 Gene

Subcategory (RNA class) for CD27-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CD27-AS1 Gene

  • CD27 Antisense RNA 1 2 3 5
  • CD27 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CD27-AS1 Gene

Previous GeneCards Identifiers for CD27-AS1 Gene

  • GC12M006551

Summaries for CD27-AS1 Gene

GeneCards Summary for CD27-AS1 Gene

CD27-AS1 (CD27 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CD27-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD27-AS1 Gene

Genomics for CD27-AS1 Gene

Regulatory Elements for CD27-AS1 Gene

Enhancers for CD27-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H006442 1.4 Ensembl ENCODE dbSUPER 23.4 +6.1 6072 6 HDGF PKNOX1 SIN3A YBX1 GLI4 BATF ATF7 ETV6 RUNX3 CREM CD27-AS1 TAPBPL GAPDH ENSG00000255966 VAMP1 TNFRSF1A NCAPD2 SCARNA10 IFFO1 NOP2
GH12H006449 1.2 ENCODE dbSUPER 17.7 -0.5 -491 4.4 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF207 YY2 TAPBPL MRPL51 CD27-AS1 PTPN6 VAMP1 ENSG00000276718
GH12H006331 1.8 FANTOM5 ENCODE dbSUPER 11.4 +113.4 113429 12.7 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ENSG00000219410 ZNF384 ENSG00000247853 NCAPD2 CHD4 ING4 SPSB2 VAMP1 TAPBPL LTBR
GH12H006321 1.5 Ensembl ENCODE dbSUPER 11.6 +126.5 126474 6.5 HDGF PKNOX1 ARNT SIN3A ZNF121 GLIS2 FOS ATF7 DEK JUNB ING4 ATN1 VAMP1 LTBR SCNN1A GNB3 CD27-AS1 TAPBPL P3H3 CD27
GH12H006307 1.5 Ensembl ENCODE dbSUPER 10.5 +140.9 140898 6.7 HDGF PKNOX1 ZFP64 ARID4B DMAP1 TCF12 ATF7 RUNX3 MXD4 ZNF592 TNFRSF1A VAMP1 TAPBPL CD27-AS1 CD9 PLEKHG6 RPL13P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CD27-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CD27-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048305 -433 1601 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF207 YY2

Genomic Locations for CD27-AS1 Gene

Genomic Locations for CD27-AS1 Gene
chr12:6,439,001-6,451,567
(GRCh38/hg38)
Size:
12,567 bases
Orientation:
Minus strand
chr12:6,548,167-6,560,733
(GRCh37/hg19)

Genomic View for CD27-AS1 Gene

Genes around CD27-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CD27-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CD27-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CD27-AS1 Gene

Proteins for CD27-AS1 Gene

Post-translational modifications for CD27-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD27-AS1 Gene

Domains & Families for CD27-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CD27-AS1 Gene

Function for CD27-AS1 Gene

Phenotypes From GWAS Catalog for CD27-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD27-AS1 Gene

Localization for CD27-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CD27-AS1 Gene

Pathways & Interactions for CD27-AS1 Gene

SuperPathways for CD27-AS1 Gene

No Data Available

Interacting Proteins for CD27-AS1 Gene

Gene Ontology (GO) - Biological Process for CD27-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CD27-AS1 Gene

Drugs & Compounds for CD27-AS1 Gene

No Compound Related Data Available

Transcripts for CD27-AS1 Gene

mRNA/cDNA for CD27-AS1 Gene

(7) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CD27-AS1 Gene

CD27 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CD27-AS1 Gene

No ASD Table

Relevant External Links for CD27-AS1 Gene

GeneLoc Exon Structure for
CD27-AS1
ECgene alternative splicing isoforms for
CD27-AS1

Expression for CD27-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CD27-AS1 Gene

SOURCE GeneReport for Unigene cluster for CD27-AS1 Gene:

Hs.655224
genes like me logo Genes that share expression patterns with CD27-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CD27-AS1 Gene

Orthologs for CD27-AS1 Gene

Evolution for CD27-AS1 Gene

ENSEMBL:
Gene Tree for CD27-AS1 (if available)
TreeFam:
Gene Tree for CD27-AS1 (if available)

No data available for Orthologs for CD27-AS1 Gene

Paralogs for CD27-AS1 Gene

No data available for Paralogs for CD27-AS1 Gene

Variants for CD27-AS1 Gene

Sequence variations from dbSNP and Humsavar for CD27-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs397514667 Pathogenic 6,445,445(+) GGACT(A/G)TGACC intron-variant, upstream-variant-2KB, reference, missense
rs398122933 Pathogenic 6,445,119(+) TGGTG(A/G)CTGTG intron-variant, upstream-variant-2KB, reference, stop-gained
rs1000401707 -- 6,439,211(+) AAAAT(A/T)AAAAA nc-transcript-variant
rs1001010800 -- 6,449,204(+) GTTGG(A/C)CAGGC intron-variant
rs1001127637 -- 6,444,794(+) GAGGC(A/G)GAAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CD27-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv975437 CNV duplication 23825009
nsv8894 CNV gain 18304495
nsv818881 CNV gain 17921354
nsv442252 CNV gain 18776908
esv3628406 CNV gain 21293372
esv34390 CNV gain 17911159
esv34325 CNV gain 17911159
esv2759876 CNV gain 17122850

Relevant External Links for CD27-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CD27-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CD27-AS1 Gene

Disorders for CD27-AS1 Gene

Relevant External Links for CD27-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CD27-AS1

No disorders were found for CD27-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CD27-AS1 Gene

Publications for CD27-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CD27-AS1 Gene

Sources for CD27-AS1 Gene

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