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Aliases for CD27-AS1 Gene

Subcategory (RNA class) for CD27-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CD27-AS1 Gene

  • CD27 Antisense RNA 1 2 3
  • CD27 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CD27-AS1 Gene

Previous GeneCards Identifiers for CD27-AS1 Gene

  • GC12M006551

Summaries for CD27-AS1 Gene

GeneCards Summary for CD27-AS1 Gene

CD27-AS1 (CD27 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CD27-AS1 Gene

Genomics for CD27-AS1 Gene

Genomic Location for CD27-AS1 Gene

Chromosome:
12
Start:
6,439,001 bp from pter
End:
6,451,567 bp from pter
Size:
12,567 bases
Orientation:
Minus strand

Genomic View for CD27-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CD27-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CD27-AS1 Gene

No data available for Regulatory Elements for CD27-AS1 Gene

Proteins for CD27-AS1 Gene

Post-translational modifications for CD27-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CD27-AS1 Gene

Domains & Families for CD27-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CD27-AS1 Gene

Function for CD27-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CD27-AS1 Gene

Localization for CD27-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CD27-AS1 Gene

Pathways & Interactions for CD27-AS1 Gene

SuperPathways for CD27-AS1 Gene

No Data Available

Interacting Proteins for CD27-AS1 Gene

Gene Ontology (GO) - Biological Process for CD27-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CD27-AS1 Gene

Drugs & Compounds for CD27-AS1 Gene

No Compound Related Data Available

Transcripts for CD27-AS1 Gene

mRNA/cDNA for CD27-AS1 Gene

(7) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CD27-AS1 Gene

CD27 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CD27-AS1 Gene

No ASD Table

Relevant External Links for CD27-AS1 Gene

GeneLoc Exon Structure for
CD27-AS1
ECgene alternative splicing isoforms for
CD27-AS1

Expression for CD27-AS1 Gene

mRNA expression in normal human tissues for CD27-AS1 Gene

SOURCE GeneReport for Unigene cluster for CD27-AS1 Gene Hs.655224

genes like me logo Genes that share expression patterns with CD27-AS1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CD27-AS1 Gene

Orthologs for CD27-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CD27-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia E130112N10Rik 16
Species with no ortholog for CD27-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CD27-AS1 Gene

ENSEMBL:
Gene Tree for CD27-AS1 (if available)
TreeFam:
Gene Tree for CD27-AS1 (if available)

Paralogs for CD27-AS1 Gene

No data available for Paralogs for CD27-AS1 Gene

Variants for CD27-AS1 Gene

Sequence variations from dbSNP and Humsavar for CD27-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs112277430 -- 6,438,663(+) AACAA(C/G)TGTCT downstream-variant-500B
rs113200191 -- 6,441,913(+) GTACA(C/G)GTAAG intron-variant
rs113541517 -- 6,442,373(+) GCTTG(A/G)ACCTG intron-variant
rs116130096 -- 6,441,920(+) TAAGG(C/G)AACAG intron-variant
rs116636865 -- 6,442,036(+) CTGCC(C/T)AGGAC intron-variant

Relevant External Links for CD27-AS1 Gene

HapMap Linkage Disequilibrium report
CD27-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CD27-AS1 Gene

Disorders for CD27-AS1 Gene

Relevant External Links for CD27-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CD27-AS1
genes like me logo Genes that share disorders with CD27-AS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CD27-AS1 Gene

Publications for CD27-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for CD27-AS1 Gene

Sources for CD27-AS1 Gene

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