Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CD1A Gene

protein-coding   GIFtS: 63
GCID: GC01P158224

CD1a molecule

(Previous names: CD1A antigen, a polypeptide, CD1a antigen )
(Previous symbol: CD1)
 Explore 56 diseases affiliated with
CD1A via our new
 Human Malady Compendium 
Biological research products
for CD1A
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
CD1a Molecule1 2     R42
CD11 2     T62
CD1A Antigen, A Polypeptide1 2     Cluster Of Differentiation 1 A2
CD1a Antigen1 3     Cortical Thymocyte Antigen CD1A2
HTa1 Thymocyte Antigen2 3     Differentiation Antigen CD1-Alpha-32
T-Cell Surface Antigen T6/Leu-62 3     Epidermal Dendritic Cell Marker CD1a2
FCB62     T-Cell Surface Glycoprotein CD1a2
HTA12     

External Ids:    HGNC: 16341   Entrez Gene: 9092   Ensembl: ENSG000001584777   OMIM: 1883705   UniProtKB: P061263   

Export aliases for CD1A gene to outside databases

Previous GC identifers: GC01P156016 GC01P153956 GC01P154952 GC01P155440 GC01P155038 GC01P156490 GC01P129582


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CD1A:
This gene encodes a member of the CD1 family of transmembrane glycoproteins, which are structurally related to the
major histocompatibility complex (MHC) proteins and form heterodimers with beta-2-microglobulin. The CD1 proteins
mediate the presentation of primarily lipid and glycolipid antigens of self or microbial origin to T cells. The human
genome contains five CD1 family genes organized in a cluster on chromosome 1. The CD1 family members are thought to
differ in their cellular localization and specificity for particular lipid ligands. The protein encoded by this gene
localizes to the plasma membrane and to recycling vesicles of the early endocytic system. Alternatively spliced
transcript variants have been observed, but their biological validity has not been determined. (provided by RefSeq,
Jul 2008)

UniProtKB/Swiss-Prot: CD1A_HUMAN, P06126
Function: Antigen-presenting protein that binds self and non-self lipid and glycolipid antigens and presents them to
T-cell receptors on natural killer T-cells

Gene Wiki entry for CD1A


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CD1A gene promoter:
         Bach1   Brachyury   ATF-2   IRF-1   LCR-F1   POU2F1   POU2F1a   MRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): CD1A promoter sequence
   Search SABiosciences Chromatin IP Primers for CD1A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CD1A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q22-q23   Ensembl cytogenetic band:  1q23.1   HGNC cytogenetic band: 1q22-q23

CD1A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CD1A gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P158224:  view genomic region     (about GC identifiers)

Start:
158,223,927 bp from pter      End:
158,228,059 bp from pter
Size:
4,133 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CD1A_HUMAN, P06126 (See protein sequence)
Recommended Name: T-cell surface glycoprotein CD1a precursor  
Size: 327 amino acids; 37077 Da
Subunit: Heterodimer with B2M (beta-2-microglobulin). Interacts with CD74
Subcellular location: Cell membrane; Single-pass type I membrane protein. Endosome membrane. Note=Subject to
intracellular trafficking between the cell membrane and endosomes. Localizes to cell surface lipid rafts
Miscellaneous: During protein synthesis and maturation, CD1 family members bind endogenous lipids that are replaced by
lipid or glycolipid antigens when the proteins are internalized and pass through endosomes, before trafficking back to
the cell surface
2 PDB 3D structures from and Proteopedia for CD1A:
1ONQ (3D)        1XZ0 (3D)    
Secondary accessions: D3DVD7 Q13962 Q5TDJ8 Q9UMM4 Q9Y5M5

Explore the universe of human proteins at neXtProt for CD1A: NX_P06126

CD1A Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_001754.2  
ENSEMBL proteins: 
 ENSP00000289429  

Human Recombinant Protein Products: 
Browse Purified and Recombinant Proteins at EMD Millipore
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
OriGene Purified Protein: CD1A
OriGene Protein Over-expression Lysate: CD1A
OriGene Custom Protein Services for CD1A 
GenScript Custom Purified and Recombinant Proteins Services for CD1A
Novus Biologicals CD1A Protein
Browse Sino Biological Recombinant Proteins
Browse ProSpec Recombinant Proteins
Browse Proteins at Uscn

Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005887integral to plasma membrane NAS2447586
GO:0010008endosome membrane IEA--
GO:0042612MHC class I protein complex IEA--


CD1A for ontologies           About GeneDecksing



CD1A Antibody Products: 
EMD Millipore Mono- and Polyclonal Antibodies for the study of CD1A
R&D Systems Antibodies for CD1A
OriGene Antibodies (see all 2): CD1A
OriGene Custom Antibody Services for CD1A 
GenScript Custom Superior Antibodies Services for CD1A
Novus Biologicals CD1A Antibodies
Abcam antibodies for CD1A 
Browse Antibodies at Uscn
ThermoFisher Antibody for CD1A

Assay Products for CD1A: 
Browse Kits and Assays available from EMD Millipore
OriGene Custom Immunoassay Development
Browse OriGene Fluorogenic Cell Assay Kits
Browse R&D Systems for biochemical assays
GenScript Custom Assay Services for CD1A
Browse Enzo Life Sciences for kits & assays
Browse ELISAs and CLIAs at Uscn


(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CD1A for domains           About GeneDecksing

5/6 InterPro domains/families (see all 6):
 IPR011162 MHC_I/II-like_Ag-recog
 IPR013783 Ig-like_fold
 IPR003597 Ig_C1-set
 IPR007110 Ig-like_dom
 IPR011161 MHC_I-like_Ag-recog

Graphical View of Domain Structure for InterPro Entry P06126

ProtoNet protein and cluster: P06126

1 Blocks protein family: IPB003597 Immunoglobulin C-type

UniProtKB/Swiss-Prot: CD1A_HUMAN, P06126
Similarity: Contains 1 Ig-like (immunoglobulin-like) domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

     UniProtKB/Swiss-Prot: CD1A_HUMAN, P06126
Function: Antigen-presenting protein that binds self and non-self lipid and glycolipid antigens and presents them to
T-cell receptors on natural killer T-cells

     Genatlas biochemistry entry for CD1A:
cell differentiation antigen CD1A (T6),49kDa,membrane glycoprotein,B2M associated,identified by monoclonal antibodies
NA1/34,T6,VIT6,Leu6 (see CD1@)

miRNA
Products:
    
Browse 3'-UTR reporter clones for miRNA target validation
Browse MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CD1A
1 QIAGEN miScript miRNA Assays for microRNA that regulate CD1A:
hsa-miR-589*
SwitchGear 3'UTR luciferase reporter plasmidCD1A 3' UTR sequence
Inhib. RNA
Products:
    
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CD1A
OriGene shRNA RFP: CD1A
OriGene siRNA: CD1A
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CD1A

Gene Editing
Products:
DNA2.0 Custom Protein Engineering Service for CD1A

Clone
Products:
     
Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector: CD1A (NM_001763)
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for CD1A
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CD1A 

Cell Line
Products:
     
GenScript Custom overexpressing Cell Line Services for CD1A
Search LifeMap BioReagents cell lines for CD1A

In Situ Assay
Products:
   

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD1A

Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI15723809


CD1A for ontologies           About GeneDecksing



(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Hematopoietic cell lineage
Hematopoietic cell lineage1.00

Pathway sources
See GeneCards unified pathways
Show all pathways



1         Kegg Pathway  (Kegg details for CD1A):
    Hematopoietic cell lineage


CD1A for pathways           About GeneDecksing

Interactions:

    SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CD1A

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/49 Interacting proteins for CD1A (P061261, 3 ENSP000002894294) via UniProtKB, MINT, STRING, and/or I2D (see all 49)
InteractantInteraction Details
GeneCardExternal ID(s)
B2MP617691, 3, ENSP000003408584EBI-1036766,EBI-714718 I2D: score=4 STRING: ENSP00000340858
AZGP1ENSP000002924014STRING: ENSP00000292401
ENSG00000206435ENSP000003729754STRING: ENSP00000372975
ENSG00000206452ENSP000003832454STRING: ENSP00000383245
ENSG00000206505ENSP000003731144STRING: ENSP00000373114
About this table

Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006955immune response NAS2447586
GO:0019882antigen processing and presentation IEA--


CD1A for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

CD1A for compounds           About GeneDecksing

Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CD1A

10/519 HMDB Compounds for CD1A (see all 519)    About this table
CompoundSynonyms CAS #PubMed Ids
3-Dehydrosphinganine1-Hydroxy-2-amino-3-oxo-octadecane (see all 9)16105-69-4--
3-O-Sulfogalactosylceramide (d18:1/12:0)Sulfatide (d18:1/12:0) (see all 13)852100-88-0--
3-O-Sulfogalactosylceramide (d18:1/14:0)Sulfatide (d18:1/14:0) (see all 13)----
3-O-Sulfogalactosylceramide (d18:1/16:0)Sulfatide (d18:1/16:0) (see all 13)862509-48-6--
3-O-Sulfogalactosylceramide (d18:1/18:0)Sulfatide (d18:1/18:0) (see all 13)244215-65-4--
3-O-Sulfogalactosylceramide (d18:1/18:1(9Z))Sulfatide (d18:1/18:1(9Z)) (see all 13)----
3-O-Sulfogalactosylceramide (d18:1/20:0)Sulfatide (d18:1/20:0) (see all 13)265096-81-9--
3-O-Sulfogalactosylceramide (d18:1/22:0)Sulfatide (d18:1/22:0) (see all 13)265096-83-1--
3-O-Sulfogalactosylceramide (d18:1/24:0)Sulfatide (d18:1/24:0) (see all 16)151122-71-3--
3-O-Sulfogalactosylceramide (d18:1/24:1(15Z))Sulfatide (d18:1/24:1(15Z)) (see all 13)151057-28-2--

1 DrugBank Compound for CD1A    About this table
CompoundSynonyms CAS #TypeActionsPubMed Ids
Antithymocyte globulinrabbit ATG (see all 3)--targetinhibitor17139284 11752352 17016423

2 Novoseek chemical compound relationships for CD1A gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
glycolipid 76.1 8 12391186 (1), 10352272 (1), 17428545 (1), 11035089 (1) (see all 8)
lipid 48.3 48 20026739 (4), 17593658 (4), 10487835 (3), 9987600 (3) (see all 32)

Search CenterWatch for drugs/clinical trials and news about CD1A 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CD1A gene: 
NM_001763.2  

Unigene Cluster for CD1A:

CD1a molecule
Hs.1309  [show with all ESTs]
Unigene Representative Sequence: NM_001763
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000289429(uc001frt.3 uc021pbk.1)

miRNA
Products:
     
Browse 3'-UTR reporter clones for miRNA target validation
Browse OriGene MicroRNA Expression Plasmids
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CD1A
1 QIAGEN miScript miRNA Assays for microRNA that regulate CD1A:
hsa-miR-589*
SwitchGear 3'UTR luciferase reporter plasmidCD1A 3' UTR sequence
Inhib. RNA
Products:
     
Browse for Gene Knock-down Tools from EMD Millipore
OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CD1A
OriGene shRNA RFP: CD1A
OriGene siRNA: CD1A
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CD1A
Clone
Products:
     
OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
GenScript: all cDNA clones in your preferred vector: CD1A (NM_001763)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for CD1A
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CD1A 
Primer
Products:
    
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CD1A
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CD1A
  QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CD1A
  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CD1A

Additional cDNA sequence: 

AK312945.1 BC031645.1 M27735.1 M28825.1 X04450.1 

8 DOTS entries:

DT.100776245  DT.121377677  DT.121377701  DT.111387  DT.121377691  DT.92416233  DT.100644955  DT.121377683 

24/30 AceView cDNA sequences (see all 30):

CR603267 BG679322 L44433 AI581337 X79308 AA354298 CA432941 AA310607 
BX281603 BC031645 M27735 BI828464 X04450 BV202113 AI240210 AW949640 
NM_001763 BX414919 AW303389 M28825 AA354975 AA310389 AA731869 AV717068 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CD1A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTCTCAATAA

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)

About this image

CD1A expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
BloodPeripheral BloodT-Cytotoxic CellsBlood
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
Dendritic-like cells (Generation of hemato...)

See CD1A Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CD1A

SOURCE GeneReport for Unigene cluster: Hs.1309

UniProtKB/Swiss-Prot: CD1A_HUMAN, P06126
Tissue specificity: Expressed on cortical thymocytes, epidermal Langerhans cells, dendritic cells, on certain T-cell
leukemias, and in various other tissues

    SABiosciences Expression via Pathway-Focused PCR Arrays including CD1A: 
          Cell Surface Markers in human mouse rat
          Antigen Presenting Cells in human mouse rat

Primer
Products:
OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CD1A
Browse OriGene validated miRNA SYBR primer pairs
SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CD1A
QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CD1A
QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CD1A
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD1A

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CD1A gene from 3/8 species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves GGA.298946
Uncharacterized protein
21(a)
1 → many
16(1371-11718)
lizard
(Anolis carolinensis)
Reptilia --
--
25(a)
1 → many
2(189406880-189414378)
zebrafish
(Danio rerio)
Actinopterygii mhc1uba6
BX572619.36
(see all 16)
--
18(a)
18(a)
(see all 16)
possible ortholog
many ↔ many
(see all 16)
19(7695390-7723636)
25(11071636-11074578)


ENSEMBL Gene Tree for CD1A (if available)
TreeFam Gene Tree for CD1A (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for CD1A gene
CD1D2  CD1B2  CD1C2  CD1E2  
6 SIMAP similar genes for CD1A using alignment to 2 protein entries:     CD1A_HUMAN (see all proteins):
CDIE    CD1E    CD1C    CD1D    CD1B    B2M

CD1A for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/195 NCBI SNPs in CD1A are shown (see all 195    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1118141291,2
F--129582658(+) TGTGTG/CTGTGT 1 -- int12Minor allele frequency- C:0.50CSA 4
rs1138025471,2
F--129582660(+) TGTGTG/CTGTGT 1 -- int12Minor allele frequency- C:0.50CSA 4
rs1929660291,2
--158222097(+) AAAGGC/TTTAGA 1 -- us2k10--------
rs1164115351,2
--158222245(+) AACAAG/AGGTTT 1 -- us2k11Minor allele frequency- A:0.01NA 120
rs1830944191,2
--158222254(+) TTGCAC/TTCCAT 1 -- us2k10--------
rs1508384051,2
C,--158222455(+) TGGGA-/GGGCTG 1 -- us2k10--------
rs1872556411,2
--158222466(+) CTGAGA/GCAGGT 1 -- us2k10--------
rs1453864191,2
--158222611(+) TTAACA/CTGGGA 1 -- us2k10--------
rs618187151,2
--158222676(+) GAGTGG/AGACTC 1 -- us2k11Minor allele frequency- A:0.50NA 2
rs1921097371,2
--158222700(+) AACAAA/TACAAA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for CD1A (158223927 - 158228059 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for CD1A
     1 CNV: 48143
Human Gene Mutation Database (HGMD): CD1A

SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CD1A
DNA2.0 Custom Variant and Variant Library Synthesis for CD1A

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CD1A for disorders           About GeneDecksing

OMIM gene information: 188370    OMIM disorders: --

20/56 diseases for CD1A (see all 56):    About MalaCards
langerhans-cell histiocytosis    guillain-barre syndrome    mycobacterium malmoense    mycosis fungoides
epidermodysplasia verruciformis    actinic cheilitis    lichen planus    barrett's esophagus
oral lichen planus    cyclosporiasis    histiocytosis    cheilitis
langerhans cell sarcoma    monocytic leukemia    acute monocytic leukemia    diabetes insipidus
cystic teratoma    aggressive periodontitis    bronchial asthma    teratoma

4 diseases from the University of Copenhagen DISEASES database for CD1A:
Myocardial infarction     Cancer     Langerhans-cell histiocytosis     Cyclosporiasis

10/16 Novoseek disease relationships for CD1A gene (see all 16)    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
langerhans cell histiocytosis 77 4 14576638 (1), 20439325 (1), 18277880 (1)
histiocytosis 68.2 2 17378241 (1), 12717600 (1)
eosinophilic granuloma 58.8 1 20074763 (1)
sarcoma 23.8 2 18360746 (1), 20439325 (1)
mycosis fungoides 22.4 1 7593815 (1)
tuberculosis 18.3 2 19808251 (1), 16034117 (1)
barrett esophagus 14.5 2 17308274 (1)
tumors 9.99 7 12865628 (1), 16243135 (1), 15914364 (1), 18047662 (1) (see all 6)
autoimmunity 3.87 1 18593354 (1)
infectious disease 2.34 2 9973451 (1), 14991068 (1)

Genetic Association Database (GAD): CD1A
Human Genome Epidemiology (HuGE) Navigator: CD1A (9 documents)

Export disorders for CD1A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for CD1A gene, integrated from 9 sources (see all 210):
(articles sorted by number of sources associating them with CD1A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular cloning of CD1a (T6), a human epidermal dendritic cell marker related to class I MHC molecules. (PubMed id 2784820)1, 2, 3 Longley J.... Edelson R. (1989)
  2. Structure and expression of the human thymocyte antigens CD1a, CD1b, and CD1c. (PubMed id 2447586)1, 2, 3 Martin L.H.... Milstein C. (1987)
  3. CD1 genotyping of patients with Mycobacterium malmoense pulmonary disease. (PubMed id 11580851)1, 4, 9 Jones D.C....Bunce M. (2001)
  4. Regulation of CD1a surface expression and antigen presentation by invariant chain and lipid rafts. (PubMed id 18178838)1, 2 Sloma I.... Gelin C. (2008)
  5. CD1a-, b-, and c-restricted TCRs recognize both self and foreign antigens. (PubMed id 16272286)1, 2 Vincent M.S.... Brenner M.B. (2005)
  6. Molecular mechanism of lipopeptide presentation by CD1a. (PubMed id 15723809)1, 2 Zajonc D.M....Wilson I.A. (2005)
  7. Crystal structure of CD1a in complex with a sulfatide self antigen at a resolution of 2.15 A. (PubMed id 12833155)1, 2 Zajonc D.M.... Wilson I.A. (2003)
  8. Polymorphism of human CD1 genes. (PubMed id 10488738)1, 2 Han M.... Robinson M.A. (1999)
  9. Expression of cDNA clones encoding the thymocyte antigens CD1a, b, c demonstrates a hierarchy of exclusion in fibroblasts. (PubMed id 2701945)1, 2 Aruffo A. and Seed B. (1989)
  10. A novel family of human major histocompatibility complex-related genes not mapping to chromosome 6. (PubMed id 3093894)1, 2 Calabi F. and Milstein C. (1986)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 909 HGNC: 1634 AceView: CD1A Ensembl:ENSG00000158477 euGenes: HUgn909
ECgene: CD1A Kegg: 909 H-InvDB: CD1A

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for CD1A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for CD1A gene:
Search GeneIP for patents involving CD1A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section

 Browse Kits and Assays available from EMD Millipore
 Browse Purified and Recombinant Proteins at EMD Millipore
 Browse Small Molecules at EMD Millipore
 Browse for Gene Knock-down Tools from EMD Millipore
 EMD Millipore Mono- and Polyclonal Antibodies for the study of CD1A
 Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
 
 EMD Millipore Custom Antibody & Bulk Services
 EMD Millipore Preclinical / Clinical Development Services
 EMD Millipore Immunoassay Services
 EMD Millipore Target Screening & Profiling Services

  
 Antibodies for CD1A (CD1a)   Browse Cell Culture Products  
 Browse ELISAs   Browse Flow Cytometry Kits  
 Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
 Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
 Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
 Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
 Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
 Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
 OriGene Antibodies for CD1A   OriGene shRNA RFP for CD1A  
 OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CD1A   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CD1A  
 OriGene Protein Over-expression Lysate for CD1A   Browse OriGene Fluorogenic Cell Assay Kits  
 OriGene siRNA for CD1A   Browse 3'-UTR reporter clones for miRNA target validation  
 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CD1A  
 Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
 Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
 OriGene Purified Protein for CD1A   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
 OriGene Custom Antibody Services for CD1A   OriGene Custom Protein Services for CD1A  
 OriGene Custom Immunoassay Development  

 
 
 QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CD1A
 QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CD1A
 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CD1A
 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CD1A
 QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CD1A
 QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CD1A
 GenScript Custom Purified and Recombinant Proteins Services for CD1A GenScript cDNA clones with any tag delivered in your preferred vector for CD1A
 GenScript Custom Assay Services for CD1A GenScript Custom Superior Antibodies Services for CD1A
 GenScript Custom overexpressing Cell Line Services for CD1A CloneReady with Over 120,000 Genes
 Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
 Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
 Custom Peptide Services
 Search for Antibodies & Assays

 Regulatory tfbs in CD1A promoter
 Search Chromatin IP Primers for CD1A
 RT2 qPCR Primer Assay in human, mouse / rat CD1A
 GNC Network for CD1A
 SABiosciences PCR Arrays including human, mouse / rat CD1A
 Search Tocris compounds for CD1A
 Browse Sino Biological Proteins and Antibodies
 Browse Sino Biological cDNA Clones
 Antibodies/Proteins Production Services
 Rabbit Monoclonal Antibody Platform
 Bulk Purchasing
 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
 Novus Tissue Slides
 CD1A antibodies
 CD1A proteins
 Antibodies for CD1A
 See all of Abcam's Antibodies, Kits and Proteins for CD1A
 Custom Antibody / Protein Production Service
 Bulk Purchasing
 Advantages of Rabbit Monoclonal antibodies
 Abcam protocols and scientific support
 Browse ProSpec Recombinant Proteins




 Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
 Search LifeMap BioReagents cell lines for CD1A
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CD1A
 SwitchGear 3'UTR luciferase reporter plasmids for CD1A
 SwitchGear Promoter luciferase reporter plasmids for CD1A
 ThermoFisher Antibody for CD1A
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CD1A
       
GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

View Random Gene

Category
VWF
(GIFTS: 73)
von Willebrand factor
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      CD1A gene at Home site.
hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4