Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCZ1B Gene

Aliases for CCZ1B Gene

  • CCZ1 Vacuolar Protein Trafficking And Biogenesis Associated Homolog B (S. Cerevisiae) 2 3
  • C7orf28B 3 4
  • Vacuolar Fusion Protein CCZ1 Homolog-Like 4
  • Vacuolar Fusion Protein CCZ1 Homolog B 3
  • Chromosome 7 Open Reading Frame 28B 2
  • Similar To CGI-43 Protein 2
  • H_DJ1163J12.2 3
  • H_NH0577018.2 3

External Ids for CCZ1B Gene

Previous Symbols for CCZ1B Gene

  • C7orf28B

Summaries for CCZ1B Gene

GeneCards Summary for CCZ1B Gene

CCZ1B (CCZ1 Vacuolar Protein Trafficking And Biogenesis Associated Homolog B (S. Cerevisiae)) is a Protein Coding gene. An important paralog of this gene is CCZ1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCZ1B Gene

Genomics for CCZ1B Gene

Genomic Location for CCZ1B Gene

Start:
6,794,134 bp from pter
End:
6,826,770 bp from pter
Size:
32,637 bases
Orientation:
Minus strand

Genomic View for CCZ1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCZ1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCZ1B Gene

No data available for Regulatory Elements for CCZ1B Gene

Proteins for CCZ1B Gene

  • Protein details for CCZ1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P86790-CCZ1B_HUMAN
    Recommended name:
    Vacuolar fusion protein CCZ1 homolog B
    Protein Accession:
    P86790
    Secondary Accessions:
    • A2RU45
    • O95766
    • Q9UG65
    • Q9Y359

    Protein attributes for CCZ1B Gene

    Size:
    482 amino acids
    Molecular mass:
    55866 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCZ1B Gene

Proteomics data for CCZ1B Gene at MOPED

Post-translational modifications for CCZ1B Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys113, Lys246, Lys295, Lys365, Lys396, and Lys456

Other Protein References for CCZ1B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCZ1B Gene

Domains for CCZ1B Gene

Protein Domains for CCZ1B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CCZ1B_HUMAN
Family:
  • Belongs to the CCZ1 family.:
    • P86790
genes like me logo Genes that share domains with CCZ1B: view

No data available for Gene Families for CCZ1B Gene

Function for CCZ1B Gene

Phenotypes for CCZ1B Gene

GenomeRNAi human phenotypes for CCZ1B:
genes like me logo Genes that share phenotypes with CCZ1B: view

miRNA for CCZ1B Gene

miRTarBase miRNAs that target CCZ1B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCZ1B Gene

Localization for CCZ1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCZ1B Gene

Lysosome membrane.

Gene Ontology (GO) - Cellular Components for CCZ1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005764 lysosome --
GO:0005765 lysosomal membrane IEA --
GO:0016020 membrane --
GO:0031988 membrane-bounded vesicle IBA --
GO:0043231 intracellular membrane-bounded organelle IBA --
genes like me logo Genes that share ontologies with CCZ1B: view

Pathways for CCZ1B Gene

SuperPathways for CCZ1B Gene

No Data Available

Interacting Proteins for CCZ1B Gene

Gene Ontology (GO) - Biological Process for CCZ1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016192 vesicle-mediated transport IBA --
genes like me logo Genes that share ontologies with CCZ1B: view

No data available for Pathways by source for CCZ1B Gene

Transcripts for CCZ1B Gene

Unigene Clusters for CCZ1B Gene

CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCZ1B Gene

No ASD Table

Relevant External Links for CCZ1B Gene

GeneLoc Exon Structure for
CCZ1B
ECgene alternative splicing isoforms for
CCZ1B

Expression for CCZ1B Gene

mRNA expression in normal human tissues for CCZ1B Gene

SOURCE GeneReport for Unigene cluster for CCZ1B Gene Hs.567779

genes like me logo Genes that share expressions with CCZ1B: view

Orthologs for CCZ1B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCZ1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 99 (a)
ManyToMany
-- 37
  • 100 (a)
ManyToMany
LOC463258 36
  • 99.45 (n)
  • 99.59 (a)
cow
(Bos Taurus)
Mammalia CCZ1 36
  • 90.36 (n)
  • 97.64 (a)
CCZ1 37
  • 97 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 79 (a)
OneToMany
CCZ1 36
  • 91.72 (n)
  • 97 (a)
mouse
(Mus musculus)
Mammalia Ccz1 36
  • 89.01 (n)
  • 96.57 (a)
Ccz1 37
  • 96 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 96 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 92 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ccz1 36
  • 89.43 (n)
  • 97.36 (a)
chicken
(Gallus gallus)
Aves CCZ1 36
  • 83.33 (n)
  • 93.78 (a)
CCZ1 37
  • 93 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 89 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia MGC68831 36
tropical clawed frog
(Silurana tropicalis)
Amphibia ccz1b 36
  • 77.89 (n)
  • 87.11 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7054 36
zebrafish
(Danio rerio)
Actinopterygii ccz1 36
  • 76.09 (n)
  • 84.37 (a)
ccz1 37
  • 83 (a)
OneToMany
zgc55344 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006687 36
  • 48.65 (n)
  • 36.43 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14980 36
  • 46 (n)
  • 31.33 (a)
CG14980 37
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ccz-1 36
  • 44.47 (n)
  • 31.09 (a)
ccz-1 37
  • 23 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G80910 36
  • 43.1 (n)
  • 26.74 (a)
rice
(Oryza sativa)
Liliopsida Os08g0427300 36
  • 39.17 (n)
  • 25.12 (a)
Species with no ortholog for CCZ1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCZ1B Gene

ENSEMBL:
Gene Tree for CCZ1B (if available)
TreeFam:
Gene Tree for CCZ1B (if available)

Paralogs for CCZ1B Gene

Paralogs for CCZ1B Gene

Selected SIMAP similar genes for CCZ1B Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for CCZ1B Gene

genes like me logo Genes that share paralogs with CCZ1B: view

Variants for CCZ1B Gene

Sequence variations from dbSNP and Humsavar for CCZ1B Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2528309 -- 6,825,159(-) CTTTA(C/T)TTCTT intron-variant
rs2528318 -- 6,821,875(-) TAAAC(C/G/T)GTCTT intron-variant
rs2528331 -- 6,816,015(-) TTCTC(C/T)TCCTC intron-variant
rs2528339 -- 6,808,213(-) GAGAT(C/T)TGATT intron-variant
rs2528342 -- 6,806,406(-) AGAGA(C/T)TAGAA intron-variant

Relevant External Links for CCZ1B Gene

HapMap Linkage Disequilibrium report
CCZ1B

No data available for Structural Variations from Database of Genomic Variants (DGV) for CCZ1B Gene

Disorders for CCZ1B Gene

No disorders were found for CCZ1B Gene.

No data available for UniProtKB/Swiss-Prot for CCZ1B Gene

Publications for CCZ1B Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3

Products for CCZ1B Gene

Sources for CCZ1B Gene

Back to Top

Content