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CCT7 Gene(Protein Coding)

Chaperonin Containing TCP1 Subunit 7

GCID:
GC02P073233
GIFtS:
58
Genes Participants
UDN Logo

Aliases for CCT7 Gene

Aliases for CCT7 Gene

  • Chaperonin Containing TCP1 Subunit 7 2 3 5
  • TCP-1-Eta 3 4
  • CCT-Eta 3 4
  • NIP7-1 3 4
  • CCTH 3 4
  • Chaperonin Containing T-Complex Polypeptide 1, Eta Subunit 3
  • Chaperonin Containing TCP1, Subunit 7 (Eta) 2
  • T-Complex Protein 1 Subunit Eta 3
  • HIV-1 Nef Interacting Protein 3
  • HIV-1 Nef-Interacting Protein 4
  • TCP1ETA 3
  • CCTETA 3

External Ids for CCT7 Gene

Previous GeneCards Identifiers for CCT7 Gene

  • GC02P073470
  • GC02P073672
  • GC02P073419
  • GC02P073435
  • GC02P073373
  • GC02P073314
  • GC02P073460
  • GC02P073197

Summaries for CCT7 Gene

Entrez Gene Summary for CCT7 Gene

  • This gene encodes a molecular chaperone that is a member of the chaperonin containing TCP1 complex (CCT), also known as the TCP1 ring complex (TRiC). This complex consists of two identical stacked rings, each containing eight different proteins. Unfolded polypeptides enter the central cavity of the complex and are folded in an ATP-dependent manner. The complex folds various proteins, including actin and tubulin. Alternative splicing results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 5 and 6. [provided by RefSeq, Oct 2009]

GeneCards Summary for CCT7 Gene

CCT7 (Chaperonin Containing TCP1 Subunit 7) is a Protein Coding gene. Diseases associated with CCT7 include Myocardial Infarction and Babesiosis. Among its related pathways are Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding and Chaperonin-mediated protein folding. GO annotations related to this gene include identical protein binding and unfolded protein binding.

UniProtKB/Swiss-Prot for CCT7 Gene

  • Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (By similarity).

Gene Wiki entry for CCT7 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT7 Gene

Genomics for CCT7 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCT7 Gene

Enhancers for CCT7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G073212 0.9 ENCODE 17.5 -20.6 -20562 0.7 ELF3 RB1 ZSCAN4 ARID4B DMAP1 ZNF48 RAD21 ZNF121 SLC30A9 SCRT2 PRADC1 CCT7 RAB11FIP5 SFXN5 SPR SMYD5 NOTO
GH02G073175 1.7 FANTOM5 Ensembl ENCODE 5.1 -56.8 -56766 3.2 HDGF FOXA2 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SMYD5 SFXN5 DUSP11 PRADC1 ENSG00000273245 NOTO SPR EMX1 CCT7 EGR4
GH02G073232 1.2 ENCODE 5.7 +0.9 914 3.9 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC DUSP11 ENSG00000273245 FBXO41 PRADC1 DGUOK-AS1 CCT7 PIR47890
GH02G073030 1.3 Ensembl ENCODE 5.2 -200.3 -200256 4.5 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 FOS SP5 NFYC RAB11FIP5 CCT7 SFXN5 LOC105374800 GC02P072995
GH02G073213 1.1 ENCODE 5.3 -18.9 -18868 2.4 HDGF FOXA2 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 PRADC1 SMYD5 CCT7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCT7 on UCSC Golden Path with GeneCards custom track

Promoters for CCT7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000119039 680 2601 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3

Transcription factor binding sites by QIAGEN in the CCT7 gene promoter:

Genomic Location for CCT7 Gene

Chromosome:
2
Start:
73,233,420 bp from pter
End:
73,253,022 bp from pter
Size:
19,603 bases
Orientation:
Plus strand

Genomic View for CCT7 Gene

Genes around CCT7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT7 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCT7 Gene

Proteins for CCT7 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CCT7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99832-TCPH_HUMAN
    Recommended name:
    T-complex protein 1 subunit eta
    Protein Accession:
    Q99832
    Secondary Accessions:
    • A8K7E6
    • A8MWI8
    • B7WNW9
    • B7Z4T9
    • B7Z4Z7
    • O14871
    • Q6FI26

    Protein attributes for CCT7 Gene

    Size:
    543 amino acids
    Molecular mass:
    59367 Da
    Quaternary structure:
    • Heterooligomeric complex of about 850 to 900 kDa that forms two stacked rings, 12 to 16 nm in diameter. Interacts with PACRG.

    Alternative splice isoforms for CCT7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCT7 Gene

Protein Expression for CCT7 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CCT7 Gene

  • Ubiquitination at Lys47, Lys55, posLast=7777, Lys84, Lys109, posLast=135135, posLast=166166, posLast=172172, posLast=218218, Lys277, posLast=368368, Lys418, posLast=430430, Lys440, and Lys521
  • Modification sites at PhosphoSitePlus

Other Protein References for CCT7 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCT7 Gene

Domains & Families for CCT7 Gene

Gene Families for CCT7 Gene

HGNC:

Protein Domains for CCT7 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CCT7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q99832

UniProtKB/Swiss-Prot:

TCPH_HUMAN :
  • Belongs to the TCP-1 chaperonin family.
Family:
  • Belongs to the TCP-1 chaperonin family.
genes like me logo Genes that share domains with CCT7: view

Function for CCT7 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for CCT7 Gene

UniProtKB/Swiss-Prot Function:
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (By similarity).

Gene Ontology (GO) - Molecular Function for CCT7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14532270
GO:0005524 ATP binding IEA --
GO:0042802 identical protein binding IEA --
GO:0044183 protein binding involved in protein folding IBA --
GO:0051082 unfolded protein binding IBA,IEA --
genes like me logo Genes that share ontologies with CCT7: view
genes like me logo Genes that share phenotypes with CCT7: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCT7 Gene

Localization for CCT7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCT7 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCT7 gene
Compartment Confidence
extracellular 5
cytoskeleton 5
cytosol 5
mitochondrion 2
nucleus 2

Gene Ontology (GO) - Cellular Components for CCT7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002199 zona pellucida receptor complex IEA --
GO:0005737 cytoplasm TAS 9819444
GO:0005739 mitochondrion IEA --
GO:0005829 cytosol TAS --
GO:0005832 chaperonin-containing T-complex TAS 25467444
genes like me logo Genes that share ontologies with CCT7: view

Pathways & Interactions for CCT7 Gene

genes like me logo Genes that share pathways with CCT7: view

Gene Ontology (GO) - Biological Process for CCT7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding TAS,IEA --
GO:0006458 de novo protein folding IBA --
GO:0007339 binding of sperm to zona pellucida IEA --
GO:0032212 positive regulation of telomere maintenance via telomerase IMP 25467444
GO:0050821 protein stabilization IMP 25467444
genes like me logo Genes that share ontologies with CCT7: view

No data available for SIGNOR curated interactions for CCT7 Gene

Drugs & Compounds for CCT7 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCT7 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCT7 Gene

(6) REFSEQ mRNAs :
(17) Additional mRNA sequences :
(1694) Selected AceView cDNA sequences:
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT7 Gene

Chaperonin containing TCP1, subunit 7 (eta):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCT7 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b · 5c · 5d · 5e · 5f ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d ^ 9a ·
SP1: - - - - -
SP2: - - -
SP3: - - - -
SP4: - - - - - -
SP5: - - - -
SP6: - - - - - - - - - -
SP7: - - - - - - - - -
SP8: - - - - - - - - - -
SP9: - - - - - - - - - -
SP10: - - -
SP11: - - - - - - - - - - - - - - - - -
SP12: -
SP13: - -
SP14:
SP15:

ExUns: 9b · 9c ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13 ^ 14
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14: -
SP15:

Relevant External Links for CCT7 Gene

GeneLoc Exon Structure for
CCT7
ECgene alternative splicing isoforms for
CCT7

Expression for CCT7 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT7 Gene

mRNA expression in normal human tissues for CCT7 Gene
mRNA expression by BioGPS for CCT7 GenemRNA expression by GTEx for CCT7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CCT7 Gene



Protein tissue co-expression partners for CCT7 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCT7 Gene:

CCT7

SOURCE GeneReport for Unigene cluster for CCT7 Gene:

Hs.368149

Evidence on tissue expression from TISSUES for CCT7 Gene

  • Nervous system(5)
  • Skin(4.9)
  • Liver(4.8)
  • Heart(4.7)
  • Intestine(4.6)
  • Lung(4.6)
  • Pancreas(4.5)
  • Eye(4.4)
  • Muscle(4.1)
  • Kidney(4)
  • Blood(3.6)
  • Stomach(3.4)
  • Adrenal gland(2)
genes like me logo Genes that share expression patterns with CCT7: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT7 Gene

Orthologs for CCT7 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCT7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia CCT7 34 35
  • 99.69 (n)
cow
(Bos Taurus)
 Mammalia CCT7 34 35
  • 91.22 (n)
dog
(Canis familiaris)
 Mammalia CCT7 35
  • 91 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Cct7 34
  • 90.43 (n)
mouse
(Mus musculus)
 Mammalia Cct7 34 16 35
  • 89.87 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia CCT7 35
  • 87 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia CCT7 35
  • 86 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves CCT7 34 35
  • 81.51 (n)
lizard
(Anolis carolinensis)
 Reptilia CCT7 35
  • 91 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia cct7 34
  • 79.8 (n)
Str.2286 34
African clawed frog
(Xenopus laevis)
 Amphibia Xl.6672 34
zebrafish
(Danio rerio)
 Actinopterygii cct7 34 35
  • 78.74 (n)
rainbow trout
(Oncorhynchus mykiss)
 Actinopterygii Omy.12021 34
fruit fly
(Drosophila melanogaster)
 Insecta CG8351 36
  • 76 (a)
Tcp-1eta 34 35
  • 69.78 (n)
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP002762 34
  • 69.66 (n)
worm
(Caenorhabditis elegans)
 Secernentea cct-7 34 35
  • 62.97 (n)
A. gosspyii yeast
(Ashbya gossypii)
 Saccharomycetes AGOS_AFR067W 34
  • 63.97 (n)
K. lactis yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0F21340g 34
  • 61.54 (n)
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes CCT7 34 35 37
  • 61.04 (n)
thale cress
(Arabidopsis thaliana)
 eudicotyledons AT3G11830 34
  • 63.56 (n)
soybean
(Glycine max)
 eudicotyledons Gma.8037 34
rice
(Oryza sativa)
 Liliopsida Os06g0687700 34
  • 63.24 (n)
Os.11699 34
barley
(Hordeum vulgare)
 Liliopsida Hv.3076 34
wheat
(Triticum aestivum)
 Liliopsida Ta.14018 34
corn
(Zea mays)
 Liliopsida Zm.3176 34
sea squirt
(Ciona savignyi)
 Ascidiacea CSA.5206 35
  • 79 (a)
 OneToOne
bread mold
(Neurospora crassa)
 Ascomycetes NCU09700 34
  • 63.1 (n)
fission yeast
(Schizosaccharomyces pombe)
 Schizosaccharomycetes cct7 34
  • 62.32 (n)
sea squirt
(Ciona intestinalis)
 Ascidiacea Cin.4924 34
Species where no ortholog for CCT7 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for CCT7 Gene

ENSEMBL:
Gene Tree for CCT7 (if available)
TreeFam:
Gene Tree for CCT7 (if available)

Paralogs for CCT7 Gene

(8) SIMAP similar genes for CCT7 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for CCT7 Gene

genes like me logo Genes that share paralogs with CCT7: view

No data available for Paralogs for CCT7 Gene

Variants for CCT7 Gene

Sequence variations from dbSNP and Humsavar for CCT7 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs587777929 Pathogenic 73,252,803(+) CCGCT(C/T)GACTG nc-transcript-variant, reference, missense
rs1000062074 -- 73,238,093(+) TATTG(A/G)GTATT intron-variant
rs1000238228 -- 73,237,548(+) CCCTT(A/T)CAGAA intron-variant
rs1000265149 -- 73,243,433(+) CATGG(G/T)GTATA intron-variant
rs1000666126 -- 73,236,521(+) TTTTT(A/G)GTAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCT7 Gene

Variant ID Type Subtype PubMed ID
esv3583864 CNV loss 25503493
nsv2776 CNV deletion 18451855

Variation tolerance for CCT7 Gene

Residual Variation Intolerance Score: 19% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.65; 31.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCT7 Gene

Human Gene Mutation Database (HGMD)
CCT7
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCT7 Gene

Disorders for CCT7 Gene

MalaCards: The human disease database

(3) MalaCards diseases for CCT7 Gene - From: ClinVar, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
myocardial infarction
  • myocardial infarction, protection against
babesiosis
  • babesiasis
dupuytren contracture
  • contraction of palmar fascia
- elite association - COSMIC cancer census association via MalaCards
Search CCT7 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CCT7

Genetic Association Database (GAD)
CCT7
Human Genome Epidemiology (HuGE) Navigator
CCT7
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCT7
genes like me logo Genes that share disorders with CCT7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCT7 Gene

Publications for CCT7 Gene

  1. Maturation of human cyclin E requires the function of eukaryotic chaperonin CCT. (PMID: 9819444) Won K.-A. … Reed S.I. (Mol. Cell. Biol. 1998) 2 3 4 64
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. A product of the human gene adjacent to parkin is a component of Lewy bodies and suppresses Pael receptor-induced cell death. (PMID: 14532270) Imai Y. … Takahashi R. (J. Biol. Chem. 2003) 3 4 64

Products for CCT7 Gene

Sources for CCT7 Gene

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