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CCT6P5 Gene(Pseudogene)

Chaperonin Containing TCP1 Subunit 6 Pseudogene 5

GCID:
GC11M109638
GIFtS:
13
Genes Participants
UDN Logo

Aliases for CCT6P5 Gene

Subcategory (RNA class) for CCT6P5 Gene

lncRNA

Aliases for CCT6P5 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 5 2 3
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 5 2 3
  • Chaperonin Containing TCP1, Subunit 6A (Zeta 1) Pseudogene 3
  • RP11-386B1.1 5
  • CCT6-2P 3

External Ids for CCT6P5 Gene

ORGUL Members for CCT6P5 Gene

Previous GeneCards Identifiers for CCT6P5 Gene

  • GC11M109507

Summaries for CCT6P5 Gene

GeneCards Summary for CCT6P5 Gene

CCT6P5 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 5) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P5 Gene

Genomics for CCT6P5 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCT6P5 Gene

Enhancers for CCT6P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G109747 1.3 FANTOM5 Ensembl ENCODE 0.1 -109.9 -109930 0.7 SMARCE1 JUN DPF2 EP300 FOSL1 ARID1B JUND ATF3 SMARCA4 HMBOX1 ZC3H12C LOC105369482 CCT6P5
GH11G109604 0.4 ENCODE 0.3 +32.9 32918 0.8 TCF7L2 C11orf87 PIR75450 CCT6P5
GH11G109695 0.6 ENCODE 0.2 -58.2 -58223 2.2 CTCF ZNF654 REST RAD21 ZNF507 JUND SMC3 ZNF143 C11orf87 CCT6P5 LOC105369482
GH11G109618 0.2 ENCODE 0.4 +18.5 18478 1.3 C11orf87 CCT6P5 PIR75450
GH11G109783 0.5 ENCODE 0.1 -146.0 -146014 1.1 POLR2A SMARCA4 ZIC2 LOC105369482 CCT6P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCT6P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCT6P5 Gene

Chromosome:
11
Start:
109,637,242 bp from pter
End:
109,638,128 bp from pter
Size:
887 bases
Orientation:
Minus strand

Genomic View for CCT6P5 Gene

Genes around CCT6P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCT6P5 Gene

Proteins for CCT6P5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CCT6P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P5 Gene

Domains & Families for CCT6P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P5 Gene

Function for CCT6P5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCT6P5 Gene

Localization for CCT6P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCT6P5 Gene

Pathways & Interactions for CCT6P5 Gene

SuperPathways for CCT6P5 Gene

PathCards logo More details on SuperPathways for CCT6P5
No Data Available

Interacting Proteins for CCT6P5 Gene

Gene Ontology (GO) - Biological Process for CCT6P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCT6P5 Gene

Drugs & Compounds for CCT6P5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCT6P5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCT6P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P5 Gene

No ASD Table

Relevant External Links for CCT6P5 Gene

GeneLoc Exon Structure for
CCT6P5
ECgene alternative splicing isoforms for
CCT6P5

Expression for CCT6P5 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT6P5 Gene

mRNA expression in normal human tissues for CCT6P5 Gene
mRNA expression by GTEx for CCT6P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCT6P5 Gene:

CCT6P5
genes like me logo Genes that share expression patterns with CCT6P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P5 Gene

Orthologs for CCT6P5 Gene

Evolution for CCT6P5 Gene

ENSEMBL:
Gene Tree for CCT6P5 (if available)
TreeFam:
Gene Tree for CCT6P5 (if available)

No data available for Orthologs for CCT6P5 Gene

Paralogs for CCT6P5 Gene

No data available for Paralogs for CCT6P5 Gene

Variants for CCT6P5 Gene

Relevant External Links for CCT6P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCT6P5 Gene

Disorders for CCT6P5 Gene

No disorders were found for CCT6P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCT6P5 Gene

Publications for CCT6P5 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K. … Brocchieri L. (BMC Evol. Biol. 2010) 3 64
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 3 64
  3. Finishing the euchromatic sequence of the human genome. (PMID: 15496913) (Nature 2004) 3 64
  4. Initial sequencing and analysis of the human genome. (PMID: 11237011) Lander E.S. … Szustakowki J. (Nature 2001) 3 64

Products for CCT6P5 Gene

Sources for CCT6P5 Gene

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