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CCT6P4 Gene(Pseudogene)

Chaperonin Containing TCP1 Subunit 6 Pseudogene 4

GCID:
GC03P190714
GIFtS:
14
Genes Participants
UDN Logo

Aliases for CCT6P4 Gene

Aliases for CCT6P4 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 4 2 3 5
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 4 2 3
  • CCT6-4P 3

External Ids for CCT6P4 Gene

Previous GeneCards Identifiers for CCT6P4 Gene

  • GC00U922862
  • GC03P190433
  • GC03P187832

Summaries for CCT6P4 Gene

GeneCards Summary for CCT6P4 Gene

CCT6P4 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P4 Gene

Genomics for CCT6P4 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCT6P4 Gene

Enhancers for CCT6P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G190718 0.6 ENCODE 0.7 +4.1 4113 1.3 CTCF JUND JUN CUX1 FOS RAD21 CCT6P4 LOC100131685
GH03G190701 0.9 ENCODE 0.4 -13.5 -13482 0.1 ELF3 FOXA2 ARID4B RAD21 RARA RFX5 YY1 ZNF143 CREM MIXL1 IL1RAP LINC02013 CCT6P4
GH03G190808 0.7 ENCODE 0.2 +93.2 93179 0.2 PKNOX1 MAX ZIC2 RAD21 GABPA YY1 FOXA1 OSR2 JUND ATF3 LOC100131685 CCT6P4
GH03G190807 0.4 ENCODE 0.2 +92.6 92609 0.0 RFX1 FOXA2 LOC100131685 CCT6P4
GH03G190811 0.7 ENCODE 0.1 +97.3 97259 0.2 CTCF FOXA2 MAX ZNF2 RAD21 YY1 SMC3 ZNF654 STAT1 FOXA3 LOC100131685 CCT6P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCT6P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCT6P4 Gene

Chromosome:
3
Start:
190,714,708 bp from pter
End:
190,717,377 bp from pter
Size:
2,670 bases
Orientation:
Plus strand

Genomic View for CCT6P4 Gene

Genes around CCT6P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCT6P4 Gene

Proteins for CCT6P4 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CCT6P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P4 Gene

Domains & Families for CCT6P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P4 Gene

Function for CCT6P4 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCT6P4 Gene

Localization for CCT6P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCT6P4 Gene

Pathways & Interactions for CCT6P4 Gene

SuperPathways for CCT6P4 Gene

PathCards logo More details on SuperPathways for CCT6P4
No Data Available

Interacting Proteins for CCT6P4 Gene

Gene Ontology (GO) - Biological Process for CCT6P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCT6P4 Gene

Drugs & Compounds for CCT6P4 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCT6P4 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCT6P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P4 Gene

No ASD Table

Relevant External Links for CCT6P4 Gene

GeneLoc Exon Structure for
CCT6P4
ECgene alternative splicing isoforms for
CCT6P4

Expression for CCT6P4 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT6P4 Gene

mRNA expression in normal human tissues for CCT6P4 Gene
mRNA expression by GTEx for CCT6P4 Gene

mRNA differential expression in normal tissues according to GTEx for CCT6P4 Gene

This gene is overexpressed in Testis (x36.7), Brain - Frontal Cortex (BA9) (x8.2), and Brain - Cortex (x8.0).

NURSA nuclear receptor signaling pathways regulating expression of CCT6P4 Gene:

CCT6P4
genes like me logo Genes that share expression patterns with CCT6P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P4 Gene

Orthologs for CCT6P4 Gene

Evolution for CCT6P4 Gene

ENSEMBL:
Gene Tree for CCT6P4 (if available)
TreeFam:
Gene Tree for CCT6P4 (if available)

No data available for Orthologs for CCT6P4 Gene

Paralogs for CCT6P4 Gene

No data available for Paralogs for CCT6P4 Gene

Variants for CCT6P4 Gene

Relevant External Links for CCT6P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCT6P4 Gene

Disorders for CCT6P4 Gene

Relevant External Links for CCT6P4

Genetic Association Database (GAD)
CCT6P4

No disorders were found for CCT6P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P4 Gene

Publications for CCT6P4 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K. … Brocchieri L. (BMC Evol. Biol. 2010) 3 64
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64

Products for CCT6P4 Gene

Sources for CCT6P4 Gene

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