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Aliases for CCT6P3 Gene

Aliases for CCT6P3 Gene

  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 3 2 3
  • CCT6-3P 3

External Ids for CCT6P3 Gene

Previous GeneCards Identifiers for CCT6P3 Gene

  • GC00U923137
  • GC07P064525
  • GC07P063836
  • GC07P064503
  • GC07P064506
  • GC07P064509
  • GC07P064513
  • GC07P064516
  • GC07P064517
  • GC07P064521

Summaries for CCT6P3 Gene

GeneCards Summary for CCT6P3 Gene

CCT6P3 (Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P3 Gene

Genomics for CCT6P3 Gene

Genomic Location for CCT6P3 Gene

Start:
65,038,354 bp from pter
End:
65,074,713 bp from pter
Size:
36,360 bases
Orientation:
Plus strand

Genomic View for CCT6P3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCT6P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P3 Gene

No data available for Regulatory Elements for CCT6P3 Gene

Proteins for CCT6P3 Gene

Post-translational modifications for CCT6P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P3 Gene

Domains for CCT6P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P3 Gene

Function for CCT6P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCT6P3 Gene

Localization for CCT6P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCT6P3 Gene

Pathways for CCT6P3 Gene

SuperPathways for CCT6P3 Gene

No Data Available

Interacting Proteins for CCT6P3 Gene

Gene Ontology (GO) - Biological Process for CCT6P3 Gene

None

No data available for Pathways by source for CCT6P3 Gene

Transcripts for CCT6P3 Gene

mRNA/cDNA for CCT6P3 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT6P3 Gene

Chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P3 Gene

No ASD Table

Relevant External Links for CCT6P3 Gene

GeneLoc Exon Structure for
CCT6P3
ECgene alternative splicing isoforms for
CCT6P3

Expression for CCT6P3 Gene

mRNA expression in normal human tissues for CCT6P3 Gene

SOURCE GeneReport for Unigene cluster for CCT6P3 Gene Hs.510847

genes like me logo Genes that share expressions with CCT6P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CCT6P3 Gene

Orthologs for CCT6P3 Gene

Evolution for CCT6P3 Gene

ENSEMBL:
Gene Tree for CCT6P3 (if available)
TreeFam:
Gene Tree for CCT6P3 (if available)

No data available for Orthologs for CCT6P3 Gene

Paralogs for CCT6P3 Gene

No data available for Paralogs for CCT6P3 Gene

Variants for CCT6P3 Gene

Sequence variations from dbSNP and Humsavar for CCT6P3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1404451 -- 65,046,649(-) CCCTC(A/C)GAAAA intron-variant
rs1404452 -- 65,046,535(-) CCGGA(C/T)AGCTC intron-variant
rs1464806 -- 65,064,492(+) ggttt(C/T)gaatt intron-variant
rs1524826 -- 65,073,589(-) TGAGC(A/G)ACTAA intron-variant
rs1524827 -- 65,073,395(-) CAATA(C/T)TGTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCT6P3 Gene

Variant ID Type Subtype PubMed ID
dgv1147e201 CNV Deletion 23290073
esv2422405 CNV Duplication 17116639
nsv464518 CNV Gain 19166990
dgv7308n71 CNV Gain 21882294
dgv7309n71 CNV Gain 21882294
dgv226e55 CNV Loss 17911159
nsv888284 CNV Gain 21882294
nsv517778 CNV Gain+Loss 19592680
esv2734586 CNV Deletion 23290073
dgv227e55 CNV Loss 17911159
esv2673701 CNV Deletion 23128226
esv27838 CNV Loss 19812545
nsv888285 CNV Gain 21882294
nsv888286 CNV Loss 21882294
esv24002 CNV Gain+Loss 19812545

Relevant External Links for CCT6P3 Gene

HapMap Linkage Disequilibrium report
CCT6P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCT6P3 Gene

Disorders for CCT6P3 Gene

No disorders were found for CCT6P3 Gene.

No data available for UniProtKB/Swiss-Prot for CCT6P3 Gene

Publications for CCT6P3 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K. … Brocchieri L. (BMC Evol. Biol. 2010) 3

Products for CCT6P3 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CCT6P3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CCT6P3
    • Block miRNA regulation of CCT6P3 using miScript Target Protectors

    Sources for CCT6P3 Gene

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