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Aliases for CCT6P3 Gene

Aliases for CCT6P3 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 3 2 3 5
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 3 2 3
  • CCT6-3P 3

External Ids for CCT6P3 Gene

Previous GeneCards Identifiers for CCT6P3 Gene

  • GC00U923137
  • GC07P064525
  • GC07P063836
  • GC07P064503
  • GC07P064506
  • GC07P064509
  • GC07P064513
  • GC07P064516
  • GC07P064517
  • GC07P064521
  • GC07P065040
  • GC07P065042
  • GC07P065044
  • GC07P065046
  • GC07P065048

Summaries for CCT6P3 Gene

GeneCards Summary for CCT6P3 Gene

CCT6P3 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P3 Gene

Genomics for CCT6P3 Gene

Regulatory Elements for CCT6P3 Gene

Enhancers for CCT6P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G064995 1.7 Ensembl ENCODE dbSUPER 38 -36.5 -36470 11.8 MLX CREB3L1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 GTF2IP14 ERV3-1 CCT6P3 INTS4P1 ZNF117 VKORC1L1 ENSG00000227113 EEF1DP4 ZNF680 ZNF273
GH07G065239 1.1 Ensembl ENCODE 35.9 +201.5 201459 1.2 KLF1 SAP130 RBBP5 ZIC2 ZNF48 ZFHX2 GLIS2 POLR2A ZBTB48 PATZ1 GTF2IP14 CCT6P3 ZNF117 ENSG00000237026 ENSG00000229064
GH07G065251 1.3 Ensembl ENCODE 27.6 +213.9 213935 1.5 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 KLF7 ZNF263 SP3 NFYC GTF2IP14 CCT6P3 ZNF117 CRCP ENSG00000229064 CLUHP7
GH07G065080 1.2 Ensembl ENCODE 26.3 +42.8 42769 1.8 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 BRCA1 ZNF2 ZNF48 YY1 GTF2IP14 INTS4P1 CCT6P3 ZNF117 ZNF273 ERV3-1 ENSG00000227113
GH07G065037 0.9 ENCODE 32.6 +0.8 766 2.9 HDAC1 TBP RB1 NFRKB KLF17 SIN3A YY1 EGR1 CREM CAVIN1 GTF2IP14 CCT6P3 INTS4P1 VKORC1L1 ZNF117 ENSG00000239985 GC07P065066
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCT6P3 on UCSC Golden Path with GeneCards custom track

Promoters for CCT6P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000212840 546 2201 HDAC1 TBP RB1 NFRKB SIN3A KLF17 RARA YY1 EGR1 CREM

Genomic Location for CCT6P3 Gene

Chromosome:
7
Start:
65,038,354 bp from pter
End:
65,074,713 bp from pter
Size:
36,360 bases
Orientation:
Plus strand

Genomic View for CCT6P3 Gene

Genes around CCT6P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P3 Gene

Proteins for CCT6P3 Gene

Post-translational modifications for CCT6P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P3 Gene

Domains & Families for CCT6P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P3 Gene

Function for CCT6P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCT6P3 Gene

Localization for CCT6P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCT6P3 Gene

Pathways & Interactions for CCT6P3 Gene

SuperPathways for CCT6P3 Gene

No Data Available

Interacting Proteins for CCT6P3 Gene

Gene Ontology (GO) - Biological Process for CCT6P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCT6P3 Gene

Drugs & Compounds for CCT6P3 Gene

No Compound Related Data Available

Transcripts for CCT6P3 Gene

mRNA/cDNA for CCT6P3 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT6P3 Gene

Chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P3 Gene

No ASD Table

Relevant External Links for CCT6P3 Gene

GeneLoc Exon Structure for
CCT6P3
ECgene alternative splicing isoforms for
CCT6P3

Expression for CCT6P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT6P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCT6P3 Gene:

CCT6P3

SOURCE GeneReport for Unigene cluster for CCT6P3 Gene:

Hs.510847
genes like me logo Genes that share expression patterns with CCT6P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P3 Gene

Orthologs for CCT6P3 Gene

Evolution for CCT6P3 Gene

ENSEMBL:
Gene Tree for CCT6P3 (if available)
TreeFam:
Gene Tree for CCT6P3 (if available)

No data available for Orthologs for CCT6P3 Gene

Paralogs for CCT6P3 Gene

No data available for Paralogs for CCT6P3 Gene

Variants for CCT6P3 Gene

Sequence variations from dbSNP and Humsavar for CCT6P3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000138618 -- 65,050,108(+) ATCGG(A/G)AATTA intron-variant
rs1000515971 -- 65,037,281(+) TCTTC(A/G)TCCTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000717921 -- 65,042,664(+) TAAGC(C/T)GAGAT intron-variant
rs1000958541 -- 65,063,977(+) TGCTT(C/G)AAGCT intron-variant
rs1000970552 -- 65,070,448(+) TAAGG(A/G)ATGGC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CCT6P3 Gene

Variant ID Type Subtype PubMed ID
dgv1099e201 CNV deletion 23290073
dgv226e55 CNV loss 17911159
dgv227e55 CNV loss 17911159
esv24002 CNV gain+loss 19812545
esv2422405 CNV duplication 17116639
esv2673701 CNV deletion 23128226
esv27838 CNV loss 19812545
esv3613433 CNV loss 21293372
esv3613434 CNV loss 21293372
nsv1019180 CNV loss 25217958
nsv1022042 CNV gain 25217958
nsv1029796 CNV gain 25217958
nsv464518 CNV gain 19166990
nsv517778 CNV gain+loss 19592680
nsv607312 CNV gain 21841781
nsv966821 CNV duplication 23825009
nsv981498 CNV duplication 23825009

Relevant External Links for CCT6P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCT6P3 Gene

Disorders for CCT6P3 Gene

Relevant External Links for CCT6P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCT6P3

No disorders were found for CCT6P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P3 Gene

Publications for CCT6P3 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K. … Brocchieri L. (BMC Evol. Biol. 2010) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for CCT6P3 Gene

Sources for CCT6P3 Gene

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