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Aliases for CCT6P1 Gene

Aliases for CCT6P1 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 1 2 3 5
  • Chaperonin Containing TCP1, Subunit 6A (Zeta 1) Pseudogene 1 2 3
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 1 2 3
  • Chaperonin Containing TCP1, Subunit 6A Pseudogene 3
  • CCT6-5P 3
  • CCT6AP1 3

External Ids for CCT6P1 Gene

Previous HGNC Symbols for CCT6P1 Gene

  • CCT6AP1

Previous GeneCards Identifiers for CCT6P1 Gene

  • GC07P064853
  • GC07P065220
  • GC07P064553
  • GC07P065224

Summaries for CCT6P1 Gene

GeneCards Summary for CCT6P1 Gene

CCT6P1 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 1) is a Pseudogene.

Additional gene information for CCT6P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P1 Gene

Genomics for CCT6P1 Gene

GeneHancer (GH) Regulatory Elements for CCT6P1 Gene

Promoters and enhancers for CCT6P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I065749 Promoter/Enhancer 1.5 Ensembl ENCODE 557.4 +0.0 4 2.8 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 CCT6P1 VKORC1L1 ENSG00000244657 LOC100996437 ENSG00000230189 LINC00174 ENSG00000229180 LOC84214 LOC100420547 GTF2IP9
GH07I064995 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 17 -749.2 -749220 11.8 MLX DMAP1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 ERV3-1 GTF2IP14 CCT6P3 INTS4P1 ZNF117 CCT6P1 VKORC1L1 ZNF736 ENSG00000227113 EEF1DP4
GH07I066098 Enhancer 1.2 Ensembl ENCODE 22.4 +348.8 348792 2.6 HDGF PKNOX1 CLOCK ARNT SIN3A ZNF2 ZBTB7B POLR2B E2F8 ZNF143 LOC100996437 LOC100420547 VKORC1L1 ENSG00000229180 TMEM248 CCT6P1 GUSB GS1-124K5.4 TYW1 RABGEF1
GH07I065373 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13 -376.9 -376850 2.1 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 FOS SP3 ZNF92 GTF2IP14 GUSB CCT6P1 ZNF107 CCT6P3 ERV3-1 ENSG00000238124
GH07I066113 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.1 +364.0 364000 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CRCP LOC100996437 VKORC1L1 GS1-124K5.4 LOC100420547 ENSG00000229180 TMEM248 CCT6P1 ENSG00000244657 GUSB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCT6P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CCT6P1 gene promoter:

Genomic Locations for CCT6P1 Gene

Genomic Locations for CCT6P1 Gene
chr7:65,751,105-65,763,675
(GRCh38/hg38)
Size:
12,571 bases
Orientation:
Plus strand
chr7:65,216,092-65,228,662
(GRCh37/hg19)

Genomic View for CCT6P1 Gene

Genes around CCT6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P1 Gene

Proteins for CCT6P1 Gene

Post-translational modifications for CCT6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P1 Gene

Domains & Families for CCT6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P1 Gene

Function for CCT6P1 Gene

Phenotypes From GWAS Catalog for CCT6P1 Gene

Animal Model Products

miRNA for CCT6P1 Gene

miRTarBase miRNAs that target CCT6P1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCT6P1 Gene

Localization for CCT6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCT6P1 Gene

Pathways & Interactions for CCT6P1 Gene

SuperPathways for CCT6P1 Gene

No Data Available

Interacting Proteins for CCT6P1 Gene

Gene Ontology (GO) - Biological Process for CCT6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCT6P1 Gene

Drugs & Compounds for CCT6P1 Gene

No Compound Related Data Available

Transcripts for CCT6P1 Gene

mRNA/cDNA for CCT6P1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT6P1 Gene

Chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1:
Representative Sequences:

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Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P1 Gene

No ASD Table

Relevant External Links for CCT6P1 Gene

GeneLoc Exon Structure for
CCT6P1
ECgene alternative splicing isoforms for
CCT6P1

Expression for CCT6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCT6P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCT6P1 Gene:

CCT6P1

SOURCE GeneReport for Unigene cluster for CCT6P1 Gene:

Hs.488399
genes like me logo Genes that share expression patterns with CCT6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCT6P1 Gene

Orthologs for CCT6P1 Gene

Evolution for CCT6P1 Gene

ENSEMBL:
Gene Tree for CCT6P1 (if available)
TreeFam:
Gene Tree for CCT6P1 (if available)

No data available for Orthologs for CCT6P1 Gene

Paralogs for CCT6P1 Gene

No data available for Paralogs for CCT6P1 Gene

Variants for CCT6P1 Gene

Sequence variations from dbSNP and Humsavar for CCT6P1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs10266996 -- 65,754,335(+) A/G intron_variant
rs1061439 -- 65,762,926(+) T/C intron_variant
rs10950011 -- 65,754,955(+) A/T intron_variant
rs111739753 -- 65,760,795(+) C/A intron_variant
rs111858847 -- 65,751,473(+) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCT6P1 Gene

Variant ID Type Subtype PubMed ID
dgv1099e201 CNV deletion 23290073
dgv1213e199 CNV deletion 23128226
dgv226e55 CNV loss 17911159
dgv229e55 CNV loss 17911159
dgv6444n100 CNV gain 25217958
esv2759534 CNV gain+loss 17122850
esv2761079 CNV gain+loss 21179565
esv2764020 CNV gain+loss 21179565
esv3571887 CNV loss 25503493
esv3613478 CNV loss 21293372
esv3613479 CNV gain 21293372
nsv1020622 CNV gain 25217958
nsv1029796 CNV gain 25217958
nsv436763 CNV insertion 17901297
nsv517778 CNV gain+loss 19592680
nsv819275 CNV gain 19587683

Additional Variant Information for CCT6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCT6P1 Gene

Disorders for CCT6P1 Gene

Additional Disease Information for CCT6P1

No disorders were found for CCT6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P1 Gene

Publications for CCT6P1 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K … Brocchieri L (BMC evolutionary biology 2010) 3 58
  2. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. (PMID: 19156129) Glatter T … Gstaiger M (Molecular systems biology 2009) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for CCT6P1 Gene

Sources for CCT6P1 Gene

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