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Aliases for CCT6P1 Gene

Aliases for CCT6P1 Gene

  • Chaperonin Containing TCP1 Subunit 6 Pseudogene 1 2 3 5
  • Chaperonin Containing TCP1, Subunit 6A (Zeta 1) Pseudogene 1 2 3
  • Chaperonin Containing TCP1, Subunit 6 (Zeta) Pseudogene 1 2 3
  • Chaperonin Containing TCP1, Subunit 6A Pseudogene 3
  • CCT6-5P 3
  • CCT6AP1 3

External Ids for CCT6P1 Gene

Previous HGNC Symbols for CCT6P1 Gene

  • CCT6AP1

Previous GeneCards Identifiers for CCT6P1 Gene

  • GC07P064853
  • GC07P065220
  • GC07P064553
  • GC07P065224

Summaries for CCT6P1 Gene

GeneCards Summary for CCT6P1 Gene

CCT6P1 (Chaperonin Containing TCP1 Subunit 6 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCT6P1 Gene

Genomics for CCT6P1 Gene

Regulatory Elements for CCT6P1 Gene

Enhancers for CCT6P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around CCT6P1 on UCSC Golden Path with GeneCards custom track

Promoters for CCT6P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCT6P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCT6P1 Gene

Chromosome:
7
Start:
65,751,105 bp from pter
End:
65,763,675 bp from pter
Size:
12,571 bases
Orientation:
Plus strand

Genomic View for CCT6P1 Gene

Genes around CCT6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCT6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCT6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCT6P1 Gene

Proteins for CCT6P1 Gene

Post-translational modifications for CCT6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCT6P1 Gene

Domains & Families for CCT6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCT6P1 Gene

Function for CCT6P1 Gene

Animal Model Products

miRNA for CCT6P1 Gene

miRTarBase miRNAs that target CCT6P1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCT6P1 Gene

Localization for CCT6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCT6P1 Gene

Pathways & Interactions for CCT6P1 Gene

SuperPathways for CCT6P1 Gene

No Data Available

Interacting Proteins for CCT6P1 Gene

Gene Ontology (GO) - Biological Process for CCT6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCT6P1 Gene

Drugs & Compounds for CCT6P1 Gene

No Compound Related Data Available

Transcripts for CCT6P1 Gene

mRNA/cDNA for CCT6P1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCT6P1 Gene

Chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCT6P1 Gene

No ASD Table

Relevant External Links for CCT6P1 Gene

GeneLoc Exon Structure for
CCT6P1
ECgene alternative splicing isoforms for
CCT6P1

Expression for CCT6P1 Gene

mRNA expression in normal human tissues for CCT6P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCT6P1 Gene:

CCT6P1

SOURCE GeneReport for Unigene cluster for CCT6P1 Gene:

Hs.488399
genes like me logo Genes that share expression patterns with CCT6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCT6P1 Gene

Orthologs for CCT6P1 Gene

Evolution for CCT6P1 Gene

ENSEMBL:
Gene Tree for CCT6P1 (if available)
TreeFam:
Gene Tree for CCT6P1 (if available)

No data available for Orthologs for CCT6P1 Gene

Paralogs for CCT6P1 Gene

No data available for Paralogs for CCT6P1 Gene

Variants for CCT6P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCT6P1 Gene

Variant ID Type Subtype PubMed ID
dgv1099e201 CNV deletion 23290073
dgv1213e199 CNV deletion 23128226
dgv226e55 CNV loss 17911159
dgv229e55 CNV loss 17911159
dgv6444n100 CNV gain 25217958
esv2759534 CNV gain+loss 17122850
esv2761079 CNV gain+loss 21179565
esv2764020 CNV gain+loss 21179565
esv3571887 CNV loss 25503493
esv3613478 CNV loss 21293372
esv3613479 CNV gain 21293372
nsv1020622 CNV gain 25217958
nsv1029796 CNV gain 25217958
nsv436763 CNV insertion 17901297
nsv517778 CNV gain+loss 19592680
nsv819275 CNV gain 19587683

Relevant External Links for CCT6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCT6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for CCT6P1 Gene

Disorders for CCT6P1 Gene

Relevant External Links for CCT6P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCT6P1

No disorders were found for CCT6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCT6P1 Gene

Publications for CCT6P1 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K. … Brocchieri L. (BMC Evol. Biol. 2010) 3 65
  2. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. (PMID: 19156129) Glatter T. … Gstaiger M. (Mol. Syst. Biol. 2009) 3 65
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65
  5. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 65

Products for CCT6P1 Gene

Sources for CCT6P1 Gene

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