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Aliases for CCSER1 Gene

Aliases for CCSER1 Gene

  • Coiled-Coil Serine-Rich Protein 1 2 3 4
  • Family With Sequence Similarity 190, Member A 2 3
  • FAM190A 3 4
  • Serine-Rich Coiled-Coil Domain-Containing Protein 1 3
  • Protein FAM190A 3
  • KIAA1680 4

External Ids for CCSER1 Gene

Previous Symbols for CCSER1 Gene

  • FAM190A

Summaries for CCSER1 Gene

GeneCards Summary for CCSER1 Gene

CCSER1 (Coiled-Coil Serine-Rich Protein 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCSER1 Gene

Genomics for CCSER1 Gene

Genomic Location for CCSER1 Gene

Start:
90,127,533 bp from pter
End:
91,602,219 bp from pter
Size:
1,474,687 bases
Orientation:
Plus strand

Genomic View for CCSER1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCSER1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCSER1 Gene

No data available for Regulatory Elements for CCSER1 Gene

Proteins for CCSER1 Gene

  • Protein details for CCSER1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0I3-CCSE1_HUMAN
    Recommended name:
    Serine-rich coiled-coil domain-containing protein 1
    Protein Accession:
    Q9C0I3
    Secondary Accessions:
    • Q4W5M0
    • Q86V57

    Protein attributes for CCSER1 Gene

    Size:
    900 amino acids
    Molecular mass:
    99510 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB21771.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCSER1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCSER1 Gene

Proteomics data for CCSER1 Gene at MOPED

Post-translational modifications for CCSER1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCSER1 Gene

Domains for CCSER1 Gene

Protein Domains for CCSER1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9C0I3

UniProtKB/Swiss-Prot:

CCSE1_HUMAN
Family:
  • Belongs to the CCSER family.:
    • Q9C0I3
genes like me logo Genes that share domains with CCSER1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CCSER1 Gene

Function for CCSER1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCSER1 Gene

Localization for CCSER1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCSER1 Gene

Pathways for CCSER1 Gene

SuperPathways for CCSER1 Gene

No Data Available

Interacting Proteins for CCSER1 Gene

Selected Interacting proteins: Q9C0I3-CCSE1_HUMAN for CCSER1 Gene via I2D

Symbol External ID(s) Details
NDEL1

Gene Ontology (GO) - Biological Process for CCSER1 Gene

None

No data available for Pathways by source for CCSER1 Gene

Transcripts for CCSER1 Gene

Unigene Clusters for CCSER1 Gene

Coiled-coil serine-rich protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCSER1 Gene

No ASD Table

Relevant External Links for CCSER1 Gene

GeneLoc Exon Structure for
CCSER1
ECgene alternative splicing isoforms for
CCSER1

Expression for CCSER1 Gene

mRNA expression in normal human tissues for CCSER1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCSER1 Gene

This gene is overexpressed in Testis (4.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCSER1 Gene

SOURCE GeneReport for Unigene cluster for CCSER1 Gene Hs.654735

genes like me logo Genes that share expressions with CCSER1: view

No data available for mRNA Expression by UniProt/SwissProt for CCSER1 Gene

Orthologs for CCSER1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCSER1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCSER1 36
  • 99 (a)
OneToOne
FAM190A 35
  • 99.41 (n)
  • 99.11 (a)
cow
(Bos Taurus)
Mammalia CCSER1 35
  • 89.98 (n)
  • 89.1 (a)
CCSER1 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCSER1 36
  • 88 (a)
OneToOne
FAM190A 35
  • 91.81 (n)
  • 90.56 (a)
mouse
(Mus musculus)
Mammalia Ccser1 35
  • 81.45 (n)
  • 79.44 (a)
Ccser1 16
Ccser1 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCSER1 36
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccser1 35
  • 81.34 (n)
  • 80.23 (a)
chicken
(Gallus gallus)
Aves CCSER1 36
  • 63 (a)
OneToOne
FAM190A 35
  • 70.34 (n)
  • 67.04 (a)
lizard
(Anolis carolinensis)
Reptilia CCSER1 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccser1 35
  • 63.03 (n)
  • 55.1 (a)
zebrafish
(Danio rerio)
Actinopterygii CCSER1 36
  • 45 (a)
OneToOne
si:dkey-53d10.1 35
  • 56.37 (n)
  • 53.68 (a)
Species with no ortholog for CCSER1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCSER1 Gene

ENSEMBL:
Gene Tree for CCSER1 (if available)
TreeFam:
Gene Tree for CCSER1 (if available)

Paralogs for CCSER1 Gene

No data available for Paralogs for CCSER1 Gene

Variants for CCSER1 Gene

Sequence variations from dbSNP and Humsavar for CCSER1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs2726 -- 90,181,499(-) TCCTC(C/T)CTTGA intron-variant
rs167616 -- 90,591,712(-) tagta(A/G)aatga intron-variant
rs178532 -- 90,504,621(+) ttttt(C/T)taagt intron-variant
rs183415 -- 90,574,603(+) TAGGG(G/T)GTtat intron-variant
rs186442 -- 90,524,754(+) gagcc(A/C)ccttg intron-variant

Relevant External Links for CCSER1 Gene

HapMap Linkage Disequilibrium report
CCSER1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCSER1 Gene

Disorders for CCSER1 Gene

No disorders were found for CCSER1 Gene.

No data available for UniProtKB/Swiss-Prot for CCSER1 Gene

Publications for CCSER1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Disrupted in Schizophrenia 1 Interactome: evidence for the close connectivity of risk genes and a potential synaptic basis for schizophrenia. (PMID: 17043677) Camargo L.M. … Brandon N.J. (Mol. Psychiatry 2007) 3

Products for CCSER1 Gene

Sources for CCSER1 Gene

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