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Aliases & Descriptions for CCR4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CC-CKR-4 1, 2, 3 | | CCR-4 3 | | CD194 1, 2 | | CKR4 1, 2, 5 | | CMKBR4 1, 2, 3, 5 | | ChemR13 1, 2 | | HGCN:14099 2 | | K5-5 2, 3 | | MGC88293 2 | | k5-5 1 |
| | | Descriptions |
|---|
| C-C CKR-4 3 | | CD194 antigen 3 | | chemokine (C-C motif) receptor 4 2 | | chemokine (C-C) receptor 4 2 |
|
| | Search outside databases for aliases for CCR4 genePrevious GC identifers: GC03U990019 GC03P032841 GC03P032966 GC03P032964 |
Summaries for CCR4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CCR4: The protein encoded by this gene belongs to the G-protein-coupled receptor family . It is a receptor for the CC chemokine - MIP-1, RANTES, TARC and MCP-1. Chemokines are a group of small polypeptide, structurally related molecules that regulate cell trafficking of various types of leukocytes. The chemokines also play fundamental roles in the development, homeostasis, and function of the immune system, and they have effects on cells of the central nervous system as well as on endothelial cells involved in angiogenesis or angiostasis. [provided by RefSeq] UniProtKB/Swiss-Prot: CCR4_HUMAN, P51679Function: High affinity receptor for the C-C type chemokines CCL17/TARC and CCL22/MDC. The activity of this receptor is mediated by G(i) proteins which activate a phosphatidylinositol-calcium second messenger system. Can function as a chemoattractant homing receptor on circulating memory lymphocytes and as a coreceptor for some primary HIV-2 isolates. In the CNS, could mediate hippocampal-neuron survivalGene Wiki entry for CCR4 |
Genomic Location for CCR4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CCR4 gene 
Entrez Gene cytogenetic band: 3p24 Ensembl cytogenetic band: 3p22.3 HGNC cytogenetic band: 3p24-p21.3CCR4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P032968:
(about GC identifiers)
Start:
|
32,968,070 bp from pter |
End:
|
32,971,407 bp from pter |
Size:
|
3,338 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for CCR4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CCR4_HUMAN, P51679 (See
protein sequence)Recommended Name: C-C chemokine receptor type 4 Size: 360 amino acids; 41403 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q9ULY6 Q9ULY7Post-translational modifications:
In natural killer cells, CCL22 binding induces phosphorylation on yet undefined Ser/Thr residues, most probably by beta-adrenergic receptor kinases 1 and 21
REFSEQ proteins: NP_005499.1
ENSEMBL proteins: ENSP00000332659
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CCR4: Assays for CCR4: | Protein
Domains/ Families for CCR4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P51679
ProtoNet protein and cluster: P51679 2 Blocks protein families: IPB000355 Chemokine receptor signature IPB002239 C-C chemokine receptor type 4 signature
UniProtKB/Swiss-Prot: CCR4_HUMAN, P51679Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for CCR4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005508
Applied Biosystems Silencer® siRNAs for CCR4
Sigma-Aldrich siRNA and siRNA Panels for CCR4  Sigma-Aldrich shRNA Panels and shRNA for CCR4  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for CCR4 | |  | Millipore Clones for the Expression of CCR4 |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005508                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005508                                  untagged cDNA clone in CMV expression vector: NM_005508 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005508
UniProtKB/Swiss-Prot: CCR4_HUMAN, P51679Function: High affinity receptor for the C-C type chemokines CCL17/TARC and CCL22/MDC. The activity of this receptor is mediated by G(i) proteins which activate a phosphatidylinositol-calcium second messenger system. Can function as a chemoattractant homing receptor on circulating memory lymphocytes and as a coreceptor for some primary HIV-2 isolates. In the CNS, could mediate hippocampal-neuron survivalGenatlas biochemistry entry for CCR4:chemokine CC,beta,receptor 4,with high affinity binding for basophil chemoattractant,G protein coupled receptor superfamily,specific receptor for thymus and activation-regulated chemokine2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Ccr4):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004872 | receptor activity |
IEA | -- | | GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0016493 | C-C chemokine receptor activity |
IEA | -- | About this table | Pathways & Interactions for CCR4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for CCR4 
5/45 Interacting proteins for CCR4 (ENSP000003326593 P516792) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
|
Drugs & Compounds for CCR4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for CCR4 available from Tocris Bioscience 10/12 Novoseek chemical compound relationships for CCR4 gene (see all 12
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tarc |
96.88 |
147 |
9169480 (5), 15955100 (4), 17546636 (4), 15788694 (4) (see all 74) |
| rantes |
79.28 |
21 |
9169480 (2), 16211583 (2), 18691293 (2), 12270118 (2) (see all 16) |
| ccl3 |
75.37 |
2 |
11145678 (1), 14747532 (1) |
| larc |
61.31 |
2 |
9169480 (1), 9365118 (1) |
| teck |
57.03 |
1 |
15996192 (1) |
| ccl4 |
44.19 |
3 |
11145678 (1), 14747532 (1), 15319172 (1) |
| [alcl] |
33.81 |
5 |
12181269 (2), 15289861 (1) |
| calcium |
16.56 |
15 |
16815309 (2), 9169480 (2), 16614259 (2), 9743322 (1) (see all 11) |
| lipid |
0.95 |
1 |
14971049 (1) |
| zinc |
0.00 |
1 |
16967204 (1) |
About this table
|
Transcripts for CCR4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005508
Sigma-Aldrich siRNA and siRNA Panels for CCR4  Sigma-Aldrich shRNA Panels and shRNA for CCR4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005508 REFSEQ mRNAs for CCR4 gene: NM_005508.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005508               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005508                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005508                                  untagged cDNA clone in CMV expression vector: NM_005508  Additional cDNA sequence: AK292674.1 BC069139.1 BC071751.1 BC074935.2 2 DOTS entries: DT.100731833 DT.40117006 11 AceView cDNA sequences:BC069139 NM_005508 BC074935 CD640816 BC071751 CN838882 CD639869 CN839223 CB269299 CB269413 X85740
highest scoring ESTs for CCR4:BC069139 CN838882 X85740 BC071751 BC074935 CD639869 CD640816 CN839223 NM_005508 CB269299 Unigene Cluster for CCR4: Chemokine (C-C motif) receptor 4 Hs.184926 [show with all ESTs]Unigene Representative Sequence: BC071751
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000330953
|
Expression for CCR4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CCR4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CCR4
1 / 2 / 3 3 probe-sets matching CCR4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTTGTTCTA
SOURCE GeneReport for Unigene cluster: Hs.184926
Expression variation in blood from EXPOLDB for CCR4 UniProtKB/Swiss-Prot: CCR4_HUMAN, P51679Tissue specificity: Predominantly expressed in the thymus, in peripheral blood leukocytes, including T-cells, mostly CD4+ cells, and basophils, and in platelets; at lower levels, in the spleen and in monocytes. Detected also in macrophages, IL-2-activated natural killer cells and skin-homing memory T-cells, mostly the ones expressing the cutaneous lymphocyte antigen (CLA). Expressed in brain microvascular and coronary artery endothelial cells |
Orthologs for CCR4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CCR4 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for CCR4
ENSEMBL Gene Tree for CCR4 | Paralogs for CCR4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CCR4 gene
- CCRL22 CCR22 CCR52 ENSG000002157822 CCR32 ENSG000002157752 ENSG000002157782 CCR12
|
SNPs/Variants for CCR4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CCR4 (up to first 250kb)
|
Disorders & Mutations for CCR4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604836
10/49 Novoseek disease relationships for CCR4 gene (see all 49
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| mycosis fungoides |
66.94 |
11 |
14708605 (2), 12393570 (1), 16713487 (1), 10887135 (1) (see all 9) |
| sezary syndrome |
65.13 |
7 |
17546636 (2), 12393570 (1), 15727636 (1), 19239991 (1) (see all 5) |
| dermatitis atopic |
62.98 |
35 |
11511293 (7), 15202833 (4), 10998136 (2), 12598706 (2) (see all 13) |
| lymphoma t-cell cutaneous |
58.60 |
4 |
19242508 (1), 15727636 (1), 19239991 (1) |
| lymphoma t-cell peripheral |
56.64 |
5 |
15328188 (2), 11979374 (1), 12645345 (1), 18842429 (1) |
| leukemia t-cell |
55.84 |
4 |
11861261 (2), 15026353 (1), 18178833 (1) |
| lymphoma t-cell |
51.58 |
9 |
12485447 (4), 18842429 (1), 15328188 (1), 16931956 (1) |
| inflammation |
51.29 |
30 |
16918452 (2), 12009564 (2), 11786428 (1), 14657875 (1) (see all 19) |
| anaplastic large cell lymphoma |
49.68 |
2 |
15328188 (1), 12181269 (1) |
| fibrosis idiopathic pulmonary |
49.47 |
1 |
17137778 (1) |
About this table
Genetic Association Database: CCR4 Human Genome Epidemiology Navigator: CCR4 (2 documents)
|
Medical News for CCR4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CCR4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/392 PubMed articles for CCR4 gene (see all 392
):- New variations of human CC-chemokine receptors CCR3 and CCR4. (PubMed id 11196669)1, 3, 4, 6 Kato H.... Tokunaga K. (1999)
- Molecular cloning and functional expression of a novel CC chemokine receptor cDNA from a human basophilic cell line. (PubMed id 7642634)2, 3, 4 Power C.A.... Wells T.N.C. (1995)
- Human NK cells express CC chemokine receptors 4 and 8 and respond to thymus and activation-regulated chemokine, macrophage-derived chemokine, and I-309. (PubMed id 10754297)1, 3, 4 Inngjerdingen M.... Maghazachi A.A. (2000)
- The T cell-directed CC chemokine TARC is a highly specific biological ligand for CC chemokine receptor 4. (PubMed id 9169480)1, 3, 4 Imai T.... Yoshie O. (1997)
- Macrophage-derived chemokine is a functional ligand for the CC chemokine receptor 4. (PubMed id 9430724)1, 3, 4 Imai T.... Gray P.W. (1998)
- Lack of association of CCR4 single nucleotide polymorphism with atopic dermatitis in Japanese patients. (PubMed id 15202833)1, 3, 6 Tsunemi Y....Tamaki K. (2004)
- The chemokine receptor CCR4 in vascular recognition by cutaneous but not intestinal memory T cells. (PubMed id 10466728)1, 3, 4 Campbell J.J.... Butcher E.C. (1999)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The genes encoding the human CC-chemokine receptors CC-CKR1 to CC-CKR5 (CMKBR1-CMKBR5) are clustered in the p21.3-p24 region of chromosome 3. (PubMed id 8884276)2, 3 Samson M....Parmentier M. (1996)
- Frequent expression of CCR4 in adult T-cell leukemia and human T-cell leukemia virus type 1-transformed T cells. (PubMed id 11861261)1, 3 Yoshie O....Yamada Y. (2002)
|
Search for CCR4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CCR4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CCR4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCR4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/CC_chemokine_receptors |
|
| | | About This Section
| --
| Services for CCR4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CCR4:

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Incremental update: 13 Oct 2009
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