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Aliases for CCNYL2 Gene

Aliases for CCNYL2 Gene

  • Cyclin Y-Like 2, Pseudogene 2 3
  • C10orf21 3 4
  • Chromosome 10 Open Reading Frame 21 2
  • Cyclin-Y-Like Protein 2 3
  • Cyclin Y-Like 2 2
  • BA178A10.2 3
  • CCNYL2P 3

External Ids for CCNYL2 Gene

Previous HGNC Symbols for CCNYL2 Gene

  • C10orf21

Previous GeneCards Identifiers for CCNYL2 Gene

  • GC10M042225
  • GC10M042903
  • GC10M039430

Summaries for CCNYL2 Gene

GeneCards Summary for CCNYL2 Gene

CCNYL2 (Cyclin Y-Like 2, Pseudogene) is a Pseudogene. GO annotations related to this gene include protein kinase binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNYL2 Gene

Genomics for CCNYL2 Gene

Regulatory Elements for CCNYL2 Gene

Genomic Location for CCNYL2 Gene

Start:
42,408,168 bp from pter
End:
42,475,349 bp from pter
Size:
67,182 bases
Orientation:
Minus strand

Genomic View for CCNYL2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCNYL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNYL2 Gene

Proteins for CCNYL2 Gene

  • Protein details for CCNYL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T2Q4-CCYL2_HUMAN
    Recommended name:
    Cyclin-Y-like protein 2
    Protein Accession:
    Q5T2Q4
    Secondary Accessions:

    Protein attributes for CCNYL2 Gene

    Size:
    361 amino acids
    Molecular mass:
    41278 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI12446.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for CCNYL2 Gene

Proteomics data for CCNYL2 Gene at MOPED

Post-translational modifications for CCNYL2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCNYL2 Gene

Domains for CCNYL2 Gene

Protein Domains for CCNYL2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCNYL2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T2Q4

UniProtKB/Swiss-Prot:

CCYL2_HUMAN :
  • Q5T2Q4
Domain:
  • Contains 1 cyclin N-terminal domain.
Family:
  • Belongs to the cyclin family. Cyclin Y subfamily.
genes like me logo Genes that share domains with CCNYL2: view

No data available for Gene Families for CCNYL2 Gene

Function for CCNYL2 Gene

Gene Ontology (GO) - Molecular Function for CCNYL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CCNYL2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCNYL2 Gene

Localization for CCNYL2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCNYL2 Gene COMPARTMENTS Subcellular localization image for CCNYL2 gene
Compartment Confidence
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCNYL2 Gene

Pathways for CCNYL2 Gene

SuperPathways for CCNYL2 Gene

No Data Available

Interacting Proteins for CCNYL2 Gene

Gene Ontology (GO) - Biological Process for CCNYL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA --
genes like me logo Genes that share ontologies with CCNYL2: view

No data available for Pathways by source for CCNYL2 Gene

Transcripts for CCNYL2 Gene

mRNA/cDNA for CCNYL2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCNYL2

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCNYL2 Gene

No ASD Table

Relevant External Links for CCNYL2 Gene

GeneLoc Exon Structure for
CCNYL2
ECgene alternative splicing isoforms for
CCNYL2

Expression for CCNYL2 Gene

mRNA expression in normal human tissues for CCNYL2 Gene

mRNA differential expression in normal tissues according to GTEx for CCNYL2 Gene

This gene is overexpressed in Testis (25.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCNYL2 Gene

genes like me logo Genes that share expressions with CCNYL2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCNYL2 Gene

Orthologs for CCNYL2 Gene

Evolution for CCNYL2 Gene

ENSEMBL:
Gene Tree for CCNYL2 (if available)
TreeFam:
Gene Tree for CCNYL2 (if available)

No data available for Orthologs for CCNYL2 Gene

Paralogs for CCNYL2 Gene

Selected SIMAP similar genes for CCNYL2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CCNYL2 Gene

genes like me logo Genes that share paralogs with CCNYL2: view

No data available for Paralogs for CCNYL2 Gene

Variants for CCNYL2 Gene

Sequence variations from dbSNP and Humsavar for CCNYL2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1255411 -- 42,470,188(+) CTCTC(C/T)GGGCT nc-transcript-variant
rs1255412 -- 42,472,587(+) aaata(C/T)ttggc upstream-variant-2KB
rs1892416 -- 42,434,257(+) TACAC(C/T)AACCG intron-variant
rs1937986 -- 42,456,028(+) TTACA(A/G)TTCAA intron-variant
rs1937987 -- 42,459,016(+) TCCAG(C/T)TAATC intron-variant

Relevant External Links for CCNYL2 Gene

HapMap Linkage Disequilibrium report
CCNYL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCNYL2 Gene

Disorders for CCNYL2 Gene

No disorders were found for CCNYL2 Gene.

No data available for UniProtKB/Swiss-Prot for CCNYL2 Gene

Publications for CCNYL2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4

Products for CCNYL2 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CCNYL2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CCNYL2
    • Block miRNA regulation of CCNYL2 using miScript Target Protectors

    Sources for CCNYL2 Gene

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