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Aliases for CCNT2-AS1 Gene

Subcategory (RNA class) for CCNT2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCNT2-AS1 Gene

  • CCNT2 Antisense RNA 1 2 3 5

External Ids for CCNT2-AS1 Gene

Previous GeneCards Identifiers for CCNT2-AS1 Gene

  • GC02M135495

Summaries for CCNT2-AS1 Gene

GeneCards Summary for CCNT2-AS1 Gene

CCNT2-AS1 (CCNT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCNT2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNT2-AS1 Gene

Genomics for CCNT2-AS1 Gene

Regulatory Elements for CCNT2-AS1 Gene

Enhancers for CCNT2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H134942 0.8 Ensembl ENCODE 11.7 -24.8 -24836 1 IKZF1 ATF7 EBF1 IKZF2 CCNT2 CCNT2-AS1 TMEM163 MAP3K19
GH02H134450 0.9 ENCODE 10.3 +467.7 467676 0 HDGF ARID4B ZNF2 GTF3C2 ZNF143 DEK REST MIER2 PPARG ZNF592 CCNT2 CCNT2-AS1 MGAT5 PIR62843 GC02P134449
GH02H134507 0.7 dbSUPER 12.7 +410.1 410147 2 ZFP64 ZNF140 YBX1 ZNF697 ZNF664 POLR2A ZNF680 ZC3H11A ZBTB8A REST CCNT2 CCNT2-AS1 TMEM163 GC02P134502 LOC105373629
GH02H134460 0.7 ENCODE 10.8 +458.0 457986 0 ELF3 CTCF ZNF654 ZNF792 SIN3A REST RAD21 ZKSCAN1 TEAD3 MIER3 CCNT2-AS1 CCNT2 PIR62843 GC02M134460
GH02H134461 0.4 Ensembl 10.8 +457.6 457610 0 CTCF CCNT2 CCNT2-AS1 GC02M134460 PIR62843
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCNT2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCNT2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000123487 -390 3001 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Location for CCNT2-AS1 Gene

Chromosome:
2
Start:
134,735,464 bp from pter
End:
134,918,710 bp from pter
Size:
183,247 bases
Orientation:
Minus strand

Genomic View for CCNT2-AS1 Gene

Genes around CCNT2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNT2-AS1 Gene

Proteins for CCNT2-AS1 Gene

Post-translational modifications for CCNT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCNT2-AS1 Gene

Domains & Families for CCNT2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCNT2-AS1 Gene

Function for CCNT2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCNT2-AS1 Gene

Localization for CCNT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCNT2-AS1 Gene

Pathways & Interactions for CCNT2-AS1 Gene

SuperPathways for CCNT2-AS1 Gene

No Data Available

Interacting Proteins for CCNT2-AS1 Gene

Gene Ontology (GO) - Biological Process for CCNT2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCNT2-AS1 Gene

Drugs & Compounds for CCNT2-AS1 Gene

No Compound Related Data Available

Transcripts for CCNT2-AS1 Gene

mRNA/cDNA for CCNT2-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCNT2-AS1 Gene

No ASD Table

Relevant External Links for CCNT2-AS1 Gene

GeneLoc Exon Structure for
CCNT2-AS1
ECgene alternative splicing isoforms for
CCNT2-AS1

Expression for CCNT2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCNT2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCNT2-AS1 Gene

This gene is overexpressed in Liver (x6.6) and Kidney - Cortex (x4.9).
genes like me logo Genes that share expression patterns with CCNT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNT2-AS1 Gene

Orthologs for CCNT2-AS1 Gene

Evolution for CCNT2-AS1 Gene

ENSEMBL:
Gene Tree for CCNT2-AS1 (if available)
TreeFam:
Gene Tree for CCNT2-AS1 (if available)

No data available for Orthologs for CCNT2-AS1 Gene

Paralogs for CCNT2-AS1 Gene

No data available for Paralogs for CCNT2-AS1 Gene

Variants for CCNT2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCNT2-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000053825 -- 134,867,484(+) CAATA(C/T)AGACT intron-variant, nc-transcript-variant
rs1000218835 -- 134,906,736(+) AGCAA(A/G)CAACA intron-variant
rs1000231600 -- 134,879,394(+) CCTTC(C/T)TACTT intron-variant
rs1000256834 -- 134,902,297(+) ATATA(A/G)GATAT intron-variant, utr-variant-3-prime
rs1000283558 -- 134,915,423(+) TTAAT(G/T)AAGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCNT2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3303881 CNV mobile element insertion 20981092
esv3345789 CNV insertion 20981092
nsv476729 CNV novel sequence insertion 20440878

Relevant External Links for CCNT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCNT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCNT2-AS1 Gene

Disorders for CCNT2-AS1 Gene

Relevant External Links for CCNT2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCNT2-AS1

No disorders were found for CCNT2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCNT2-AS1 Gene

Publications for CCNT2-AS1 Gene

  1. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3 60

Products for CCNT2-AS1 Gene

Sources for CCNT2-AS1 Gene

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