CCNK Gene
protein-coding GIFtS: 56
GCID: GC14P099947
|
|
cyclin K
| |
Aliases
for CCNK gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Cyclin K1 2 | | CPR41 2 3 | | Cyclin-K1 |
Export aliases for CCNK gene to outside databasesPrevious GC identifers: GC14P097459 GC14P093763 GC14P097937 GC14P097949 GC14P099017 GC14P080131 |
Summaries
for CCNK gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for CCNK:
The protein encoded by this gene is a member of the transcription cyclin family. These cyclins may regulatetranscription through their association with and activation of cyclin-dependent kinases (CDK) that phosphorylate theC-terminal domain (CTD) of the large subunit of RNA polymerase II. This gene product may play a dual role inregulating CDK and RNA polymerase II activities. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909Function: May play a role in transcriptional regulation. In vitro, is associated with a kinase activity toward both RNApolymerase II C-terminal domain and CDK2 (CAK)
Gene Wiki entry for CCNK (Cyclin K)
|
Genomic Views
for CCNK gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000014.8 NC_018925.1 NT_026437.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CCNK gene promoter:
MAZR p53 FOXD1 CUTL1 POU6F1 (c2) FOXO4 STAT3 NF-Y Pax-4a
Other transcription factors
Search SABiosciences Chromatin IP Primers for CCNK
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCNK |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 14q32 Ensembl cytogenetic band: 14q32.2 HGNC cytogenetic band: 14q32CCNK Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14P099947: view genomic region
(about GC identifiers)
Start:
|
99,947,506 bp from pter |
End:
|
100,001,381 bp from pter |
Size:
|
53,876 bases |
Orientation:
|
plus strand |
|
Proteins
for CCNK gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909 (See
protein sequence)Recommended Name: Cyclin-K Size: 580 amino acids; 64240 Da
Subunit: Part of a cyclin-kinase pair in the RNA polymerase II holoenzyme. Binds to CDK9
1 PDB 3D structure from  and Proteopedia  for CCNK:2I53 (3D)
Secondary accessions: Q59FT6 Q86U16 Q96B63 Q9NNY9Alternative splicing: 4 isoforms: O75909-3 O75909-2 O75909-1 O75909-4 Explore the universe of human proteins at neXtProt for CCNK: NX_O75909
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O75909
CCNK Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001092872.1
ENSEMBL proteins: ENSP00000374529 ENSP00000450792 ENSP00000452307 ENSP00000450440
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002944 | cyclin K-CDK12 complex |
IPI | -- | | GO:0002945 | cyclin K-CDK13 complex |
IPI | -- |
CCNK for ontologies About GeneDecksing
CCNK Antibody Products:
Assay Products for CCNK: |
Protein
Domains /
Families
for CCNK gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
CCNK for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O75909ProtoNet protein and cluster: O75909 1 Blocks protein family: IPB006670 Cyclin
UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909Similarity: Belongs to the cyclin family. Cyclin C subfamily |
Function
for CCNK gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909Function: May play a role in transcriptional regulation. In vitro, is associated with a kinase activity toward both RNApolymerase II C-terminal domain and CDK2 (CAK) Genatlas biochemistry entry for CCNK:cyclin K,RNA polymerase II associated cyclin,ubiquitously expressed but most abundant in developing germ cells of adulttestis and ovary,likely involved in the regulation of basal transcription
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCNK (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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Synthesis Service for CCNK | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCNK |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNK |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
CCNK for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for CCNK:
Animal Models:
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ccnk):
CCNK for phenotypes About GeneDecksing
|
Pathways & Interactions
for CCNK gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Direct p53 effectors | |
1  BioSystems Pathway for CCNK
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CCNK
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/34 Interacting proteins for CCNK (O759091, 2, 3 ENSP000003745294) via UniProtKB, MINT, STRING, and/or I2D (see all 34)| Interactant | Interaction Details |
|---|
| GeneCard | External ID(s) |
|---|
| ATXN1 | P542531, 2, 3, ENSP000002447694 | EBI-739806,EBI-930964 MINT-2865482 MINT-2855089 I2D:
score=3 STRING: ENSP00000244769 | | CCDC85B | Q158342, 3, ENSP000003116954 | MINT-66150 I2D:
score=5 STRING: ENSP00000311695 | | HMG20A | Q9NP662, 3, ENSP000003368564 | MINT-68052 I2D:
score=5 STRING: ENSP00000336856 | | RBPMS | Q930622, 3, ENSP000003401764 | MINT-66934 I2D:
score=5 STRING: ENSP00000340176 | | RHOXF2 | Q9BQY42, 3, ENSP000003604414 | MINT-67823 I2D:
score=5 STRING: ENSP00000360441 |
About this table
Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000079 | regulation of cyclin-dependent protein kinase activity |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0006366 | transcription from RNA polymerase II promoter |
TAS | 9632813 | | GO:0006974 | response to DNA damage stimulus |
IMP | -- | | GO:0007067 | mitosis |
IEA | -- |
CCNK for ontologies About GeneDecksing
|
Drugs & Compounds
for CCNK gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CCNK
Search CenterWatch for drugs/clinical trials and news about CCNK
|
Transcripts
for CCNK gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CCNK gene (2 alternative transcripts): NM_001099402.1 NM_003858.3 Unigene Cluster for CCNK: Cyclin K Hs.510409 [show with all ESTs]Unigene Representative Sequence: AB2093739 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000557165 ENST00000389879(uc001ygi.4) ENST00000553636 ENST00000557441
ENST00000555049 ENST00000555842 ENST00000556641 ENST00000555942 ENST00000553865
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCNK (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCNK (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: CCNK (NM_001099402) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCNK | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCNK |
Additional cDNA sequence: AB209373.1 AK000799.1 AK124466.1 AK311075.1 BC015935.1 BT006950.1 BX247958.1 13 DOTS entries: DT.215479 DT.95098492 DT.100723022 DT.100812855 DT.40192993 DT.86999816 DT.91946474 DT.102830769 DT.91990905 DT.120780549 DT.92445866 DT.95093600 DT.95150722 24/175 AceView cDNA sequences (see all 175): BC015935 BM726838 AW450108 BM504212 AA512928 BU168392 AW189101 CA398105 NM_003858 BM717996 CD722655 BM505592 CN484736 CA398104 AI422138 BX247958 AI001776 BU171093 CF541374 AA609588 BM465940 AI082525 CD365522 AA421192
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CCNK (see all 6) About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 |
|---|
|
| SP1: | | | | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | - | | - | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | - | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | - | | | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for CCNK
|
Expression
for CCNK gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CCNK expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACACCCAGAA
About this image
See CCNK Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCNK
SOURCE GeneReport for Unigene cluster: Hs.510409
UniProtKB/Swiss-Prot: CCNK_HUMAN, O75909Tissue specificity: Ubiquitously expressed. Highest levels in testis
SABiosciences Custom PCR Arrays for CCNK
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCNK
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNK |
Orthologs
for CCNK gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for CCNK gene from 9/26 species (see all 26) About this table
ENSEMBL Gene Tree for CCNK (if available)
TreeFam Gene Tree for CCNK (if available) |
Paralogs
for CCNK gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CCNK gene
- CCNT22 CCNL22 CCNC2 CCNL12 CCNT12 FAM58A2
3 SIMAP similar genes for CCNK using alignment to 4 protein entries: CCNK_HUMAN (see all proteins):CYCT1b CCNT2 FAM58A
CCNK for paralogs About GeneDecksing
|
Genomic Variants
for CCNK gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 14 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CCNK (99947506 - 100001381 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCNK: -- | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for CCNK gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
CCNK for disorders About GeneDecksing
OMIM gene information: 603544
OMIM disorders: --
12  diseases for CCNK: About MalaCardspthirus pubis infestation kaposi's sarcoma fanconi's anemia sarcoma
anemia colon carcinoma breast cancer myeloma
ataxia neuroblastoma carcinoma malaria
1 disease from the University of Copenhagen DISEASES database for CCNK:Pthirus pubis infestation 4 Novoseek disease relationships for CCNK gene About this table
Human Genome Epidemiology (HuGE) Navigator: CCNK (1 document)
Export disorders for CCNK gene to outside databases
|
Publications
for CCNK gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CCNK gene, integrated from 9 sources (see all 51):
(articles sorted by number of sources associating them with CCNK) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Human cyclin K, a novel RNA polymerase II-associated cyclin possessing both carboxy-terminal domain kinase and Cdk-activating kinase activity. (PubMed id 9632813)1, 2, 3, 9 Edwards M.C.... Elledge S.J. (1998)
- Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription. (PubMed id 10574912)1, 2, 3 Fu T.J.... Flores O. (1999)
- Crystal structure of human cyclin K, a positive regulator of cyclin- dependent kinase 9. (PubMed id 17169370)1, 2, 9 Baek K.... Ladias J.A. (2007)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Cyclin K as a direct transcriptional target of the p53 tumor suppressor. (PubMed id 11988847)1, 9 Mori T....Arakawa H. (2002)
- P-TEFb containing cyclin K and Cdk9 can activate transcription via RNA. (PubMed id 11884399)1, 9 Lin X....Peterlin B.M. (2002)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
- Interaction of cyclin-dependent kinase 12/CrkRS with c yclin K1 is required for the phosphorylation of the C-terminal domain of RNA pol ymerase II. (PubMed id 22988298)1 Cheng S.W....Morin G.B. (2012)
|
External Searches for CCNK gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CCNK gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CCNK gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCNK gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for CCNK gene:
Search GeneIP for patents involving CCNK
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CCNK gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCNK | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCNK | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCNK | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCNK | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCNK | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCNK |
| |
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 |
 | | | CCNK Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNK |
|  |  |  | | | | Search ThermoFisher Antibodies for CCNK |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCNK |
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