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Aliases for CCNJL Gene

Aliases for CCNJL Gene

  • Cyclin J-Like 2 3

External Ids for CCNJL Gene

Summaries for CCNJL Gene

GeneCards Summary for CCNJL Gene

CCNJL (Cyclin J-Like) is a Protein Coding gene. An important paralog of this gene is CCNJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNJL Gene

Genomics for CCNJL Gene

Genomic Location for CCNJL Gene

Start:
160,251,652 bp from pter
End:
160,345,396 bp from pter
Size:
93,745 bases
Orientation:
Minus strand

Genomic View for CCNJL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCNJL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNJL Gene

Regulatory Elements for CCNJL Gene

Proteins for CCNJL Gene

  • Protein details for CCNJL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IV13-CCNJL_HUMAN
    Recommended name:
    Cyclin-J-like protein
    Protein Accession:
    Q8IV13
    Secondary Accessions:
    • Q6ZN43
    • Q9H7W8

    Protein attributes for CCNJL Gene

    Size:
    435 amino acids
    Molecular mass:
    48406 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH13353.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB14856.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCNJL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCNJL Gene

Proteomics data for CCNJL Gene at MOPED

Post-translational modifications for CCNJL Gene

No Post-translational modifications

Other Protein References for CCNJL Gene

No data available for DME Specific Peptides for CCNJL Gene

Domains for CCNJL Gene

Protein Domains for CCNJL Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

CCNJL_HUMAN
Domain:
  • Contains 1 cyclin N-terminal domain.:
    • Q8IV13
Family:
  • Belongs to the cyclin family. Cyclin J subfamily.:
    • Q8IV13
genes like me logo Genes that share domains with CCNJL: view

No data available for Gene Families for CCNJL Gene

Function for CCNJL Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCNJL Gene

Localization for CCNJL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCNJL Gene COMPARTMENTS Subcellular localization image for CCNJL gene
Compartment Confidence
nucleus 2
cytosol 1
extracellular 1
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CCNJL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with CCNJL: view

Pathways for CCNJL Gene

SuperPathways for CCNJL Gene

No Data Available

Interacting Proteins for CCNJL Gene

Gene Ontology (GO) - Biological Process for CCNJL Gene

None

No data available for Pathways by source for CCNJL Gene

Transcripts for CCNJL Gene

Unigene Clusters for CCNJL Gene

Cyclin J-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCNJL Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b
SP1: -
SP2: - -
SP3: - -

Relevant External Links for CCNJL Gene

GeneLoc Exon Structure for
CCNJL
ECgene alternative splicing isoforms for
CCNJL

Expression for CCNJL Gene

mRNA expression in normal human tissues for CCNJL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCNJL Gene

This gene is overexpressed in Whole Blood (19.7), Brain - Cerebellar Hemisphere (5.3), and Brain - Cerebellum (5.1).

SOURCE GeneReport for Unigene cluster for CCNJL Gene Hs.14070

genes like me logo Genes that share expressions with CCNJL: view

Orthologs for CCNJL Gene

This gene was present in the common ancestor of animals.

Orthologs for CCNJL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCNJL 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCNJL 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 85 (a)
OneToMany
-- 37
  • 76 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ccnjl 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCNJL 37
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCNJL 37
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCNJL 37
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCNJL 37
  • 47 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CCNJL 37
  • 45 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CycJ 37
  • 19 (a)
OneToMany
Species with no ortholog for CCNJL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCNJL Gene

ENSEMBL:
Gene Tree for CCNJL (if available)
TreeFam:
Gene Tree for CCNJL (if available)

Paralogs for CCNJL Gene

Paralogs for CCNJL Gene

Selected SIMAP similar genes for CCNJL Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with CCNJL: view

Variants for CCNJL Gene

Sequence variations from dbSNP and Humsavar for CCNJL Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs754111 -- 160,294,665(+) AAGAC(A/G)CCACA intron-variant
rs754112 -- 160,295,032(+) ACTTC(C/G)CTACC intron-variant
rs768105 -- 160,298,964(+) ACTTA(C/T)GTATT intron-variant
rs889078 -- 160,266,282(-) GGGAC(A/G)CTGGC intron-variant
rs889079 -- 160,287,149(+) AGTGT(C/T)CCTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCNJL Gene

Variant ID Type Subtype PubMed ID
dgv359n21 CNV Loss 19592680
nsv5096 CNV Insertion 18451855

Relevant External Links for CCNJL Gene

HapMap Linkage Disequilibrium report
CCNJL

Disorders for CCNJL Gene

Relevant External Links for CCNJL

Genetic Association Database (GAD)
CCNJL
genes like me logo Genes that share disorders with CCNJL: view

No data available for UniProtKB/Swiss-Prot for CCNJL Gene

Publications for CCNJL Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for CCNJL Gene

Sources for CCNJL Gene

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