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Aliases for CCNJ Gene

Aliases for CCNJ Gene

  • Cyclin J 2 3 5
  • BA690P14.1 3
  • Cyclin-J 3

External Ids for CCNJ Gene

Previous GeneCards Identifiers for CCNJ Gene

  • GC10P097468
  • GC10P097793
  • GC10P091430

Summaries for CCNJ Gene

GeneCards Summary for CCNJ Gene

CCNJ (Cyclin J) is a Protein Coding gene. An important paralog of this gene is CCNJL.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNJ Gene

Genomics for CCNJ Gene

Regulatory Elements for CCNJ Gene

Enhancers for CCNJ Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F096017 0.7 ENCODE 12.3 -24.4 -24396 0.2 SCRT1 CTCF PKNOX1 ZNF654 ZFP37 TRIM22 ZEB2 REST RAD21 SCRT2 CCNJ ENTPD1-AS1 BLNK C10orf131 ZNF518A RPL21P90
GH10F096042 1 ENCODE 0.8 +2.5 2467 2.8 HDGF CREB3L1 ARID4B SIN3A ZNF48 BRCA1 ZNF2 YY1 GLIS2 ZNF143 CCNJ MIR3157
GH10F096305 0.4 FANTOM5 1.9 +263.4 263438 0.1 ZFHX2 BLNK DNTT CCNJ ZNF518A C10orf131 ENSG00000229418
GH10F096040 0.4 ENCODE 0.8 -0.6 -600 1.2 POLR2A ZIC2 ZNF518A ENTPD1-AS1 CCNJ RPL21P90
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCNJ on UCSC Golden Path with GeneCards custom track

Genomic Location for CCNJ Gene

96,041,774 bp from pter
96,060,870 bp from pter
19,097 bases
Plus strand

Genomic View for CCNJ Gene

Genes around CCNJ on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCNJ Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCNJ Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNJ Gene

Proteins for CCNJ Gene

  • Protein details for CCNJ Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • B7Z4E7
    • Q86XL1
    • Q9NV69

    Protein attributes for CCNJ Gene

    372 amino acids
    Molecular mass:
    42581 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA91887.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCNJ Gene


neXtProt entry for CCNJ Gene

Post-translational modifications for CCNJ Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCNJ Gene

Domains & Families for CCNJ Gene

Gene Families for CCNJ Gene

Protein Domains for CCNJ Gene

Suggested Antigen Peptide Sequences for CCNJ Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 cyclin N-terminal domain.
  • Belongs to the cyclin family.
  • Contains 1 cyclin N-terminal domain.
  • Belongs to the cyclin family.
genes like me logo Genes that share domains with CCNJ: view

Function for CCNJ Gene

genes like me logo Genes that share phenotypes with CCNJ: view

Animal Model Products

miRNA for CCNJ Gene

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCNJ Gene

Localization for CCNJ Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCNJ gene
Compartment Confidence
nucleus 4
cytosol 2
golgi apparatus 2
plasma membrane 1
extracellular 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for CCNJ Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with CCNJ: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCNJ Gene

Pathways & Interactions for CCNJ Gene

No Data Available

Interacting Proteins for CCNJ Gene

Gene Ontology (GO) - Biological Process for CCNJ Gene


No data available for Pathways by source and SIGNOR curated interactions for CCNJ Gene

Transcripts for CCNJ Gene

Unigene Clusters for CCNJ Gene

Cyclin J:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCNJ Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b
SP1: -
SP2: -
SP5: - -

Relevant External Links for CCNJ Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCNJ Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCNJ Gene

NURSA nuclear receptor signaling pathways regulating expression of CCNJ Gene:


SOURCE GeneReport for Unigene cluster for CCNJ Gene:

genes like me logo Genes that share expression patterns with CCNJ: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCNJ Gene

Orthologs for CCNJ Gene

This gene was present in the common ancestor of animals.

Orthologs for CCNJ Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCNJ 34 35
  • 99.65 (n)
(Bos Taurus)
Mammalia CCNJ 34 35
  • 93.56 (n)
(Monodelphis domestica)
Mammalia CCNJ 35
  • 93 (a)
(Canis familiaris)
Mammalia CCNJ 34 35
  • 92.08 (n)
(Ornithorhynchus anatinus)
Mammalia CCNJ 35
  • 90 (a)
(Rattus norvegicus)
Mammalia Ccnj 34
  • 87.77 (n)
(Mus musculus)
Mammalia Ccnj 34 16 35
  • 87.25 (n)
(Gallus gallus)
Aves CCNJ 34 35
  • 78.57 (n)
(Anolis carolinensis)
Reptilia CCNJ 35
  • 84 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ccnj 34
  • 71.03 (n)
Str.1408 34
(Danio rerio)
Actinopterygii LOC557593 34
  • 66.48 (n)
  • 66 (a)
fruit fly
(Drosophila melanogaster)
Insecta CycJ 35
  • 22 (a)
Species where no ortholog for CCNJ was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCNJ Gene

Gene Tree for CCNJ (if available)
Gene Tree for CCNJ (if available)

Paralogs for CCNJ Gene

Paralogs for CCNJ Gene

(1) SIMAP similar genes for CCNJ Gene using alignment to 2 proteins: Pseudogenes for CCNJ Gene

genes like me logo Genes that share paralogs with CCNJ: view

Variants for CCNJ Gene

Sequence variations from dbSNP and Humsavar for CCNJ Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1043518 -- 96,059,511(+) GTAAA(A/G)CATTT intron-variant, utr-variant-3-prime
rs1047370 -- 96,060,582(+) ATTGT(G/T)TGGGT intron-variant, downstream-variant-500B, utr-variant-3-prime
rs10732776 -- 96,047,284(+) AGAAA(C/G)AGTTA intron-variant
rs10882713 -- 96,058,935(+) ATTTT(C/T)AGAAT intron-variant, utr-variant-3-prime
rs111263025 -- 96,057,600(+) GACAC(A/G)TCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCNJ Gene

Variant ID Type Subtype PubMed ID
nsv825529 CNV loss 20364138
nsv1110852 OTHER inversion 24896259
esv3579077 CNV loss 25503493

Variation tolerance for CCNJ Gene

Residual Variation Intolerance Score: 24.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.72; 15.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCNJ Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCNJ Gene

Disorders for CCNJ Gene

Relevant External Links for CCNJ

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCNJ Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCNJ Gene

Publications for CCNJ Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. Long non-coding RNA HOTAIR regulates cyclin J via inhibition of microRNA-205 expression in bladder cancer. (PMID: 26469956) Sun X. … Hu T. (Cell Death Dis 2015) 3 64
  4. CCNJ detected by triple combination array analysis as a tumor-related gene of hepatocellular carcinoma. (PMID: 25672416) Takano N. … Nomoto S. (Int. J. Oncol. 2015) 3 64
  5. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PMID: 23455922) Varjosalo M. … Superti-Furga G. (Nat. Methods 2013) 3 64

Products for CCNJ Gene

Sources for CCNJ Gene

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