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Aliases & Descriptions for CCNE1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions cyclin E1 2 cyclin Es 2 cyclin Et 2
Search outside databases for aliases for CCNE1 genePrevious GC identifers: GC19P030925 GC19P030751 GC19P034978
Summaries for CCNE1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CCNE1 : The protein encoded by this gene belongs to the highly conserved cyclin family, whose members arecharacterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclinsfunction as regulators of CDK kinases. Different cyclins exhibit distinct expression anddegradation patterns which contribute to the temporal coordination of each mitotic event. Thiscyclin forms a complex with and functions as a regulatory subunit of CDK2, whose activity isrequired for cell cycle G1/S transition. This protein accumulates at the G1-S phase boundary andis degraded as cells progress through S phase. Overexpression of this gene has been observed inmany tumors, which results in chromosome instability, and thus may contribute to tumorigenesis.This protein was found to associate with, and be involved in, the phosphorylation of NPAT protein(nuclear protein mapped to the ATM locus), which participates in cell-cycle regulated histone geneexpression and plays a critical role in promoting cell-cycle progression in the absence of pRB.Two alternatively spliced transcript variants of this gene, which encode distinct isoforms, havebeen described. Two additional splice variants were reported but detailed nucleotide sequenceinformation is not yet available. [provided by RefSeq] UniProtKB/Swiss-Prot: CCNE1_HUMAN, P24864 Function : Essential for the control of the cell cycle at the G1/S (start) transition
Gene Wiki entry for CCNE1 (Cyclin_E1)
Genomic Location for CCNE1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CCNE1 gene Entrez Gene cytogenetic band: 19q12 Ensembl cytogenetic band: 19q12 HGNC cytogenetic band: 19q12 CCNE1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P034994:
(about GC identifiers )
Start:
34,994,741 bp from pter
End:
35,007,059 bp from pter
Size:
12,319 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for CCNE1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CCNE1_HUMAN, P24864 (See
protein sequence )Recommended Name: G1/S-specific cyclin-E1 Size : 410 amino acids; 47077 Da
Subunit : Interacts with a member of the CDK2/CDK protein kinases to form a serine/threonine kinaseholoenzyme complex. The cyclin subunit imparts substrate specificity to the complex. Interactswith retinoblastoma binding protein 3 and retinoblastoma-like protein 1. Found in a complex withCDK2, CABLES1 and CCNA1 (By similarity). Part of a complex consisting of UHRF2, CDK2 and CCNE1
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1W98 (3D)
 
Secondary accessions : A8K684 Q14091 Q8NFG1 Q92501 Q9UD21Alternative splicing : 3 isoforms : P24864-1 P24864-2 P24864-3
Post-translational modifications:
Phosphorylation of Thr-395 by GSK3 and of Ser-399 by CDK2 accelerates degradation via the ubiquitinproteasome pathway. Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001229.1 NP_476530.1 ENSEMBL proteins: ENSP00000262643 ENSP00000350625 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CCNE1: Assays for CCNE1:
Protein
Domains/ Families for CCNE1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P24864 ProtoNet protein and cluster: P24864
1 Blocks protein family : IPB006670 Cyclin UniProtKB/Swiss-Prot: CCNE1_HUMAN, P24864 Similarity : Belongs to the cyclin family. Cyclin E subfamily
Gene Function for CCNE1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CCNE1 ) Millipore RNAi Products for the Analysis of CCNE1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CCNE1 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001238 Applied Biosystems Silencer ® siRNAs for CCNE1 Sigma-Aldrich siRNA and siRNA Panels for CCNE1 Sigma-Aldrich shRNA Panels and shRNA for CCNE1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001238                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001238                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001238  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001238 UniProtKB/Swiss-Prot: CCNE1_HUMAN, P24864 Function : Essential for the control of the cell cycle at the G1/S (start) transition
Genatlas biochemistry entry for CCNE1 :cyclin E,48kDa,complexing with CDK2,regulating G1 to S transition of the cell cycle,overexpressedin many tumors leading to a deregulated levels of protein and kinase activity relative to the cellcycle and inducing chromosome instability
14 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Ccne1) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CCNE1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for CCNE1 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for CCNE1 5/80 Interacting proteins for CCNE1 (P24864 1 , 2 ENSP00000262643 3 ) via UniProtKB, MINT, and/or STRING (see all 80
)Interactant Interaction Details GeneCard External ID(s) FBXW7 Q969H0 2 , ENSP00000281708 3 MINT-15545 MINT-15544 MINT-14269 STRING (score=.999 ) CDKN1B P46527 1 , ENSP00000228872 3 EBI-519526, EBI-519280 STRING (score=.999 ) BRCA1 P38398 1 , ENSP00000350283 3 EBI-519526, EBI-349905 STRING (score=.972 ) CDK2 P24941 1 , 2 , ENSP00000266970 3 EBI-519526, EBI-375096 MINT-2983466 EBI-519526, EBI-375096 MINT-2983466 STRING (score=.999 ) CDKN1A P38936 1 , 2 EBI-519526, EBI-375077 MINT-2635177 EBI-519526, EBI-375077 MINT-2635177
About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for CCNE1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for CCNE1
Browse Tocris compounds for CCNE1 2 Novoseek chemical compound relationships for CCNE1 gene
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Transcripts for CCNE1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CCNE1 ) Millipore RNAi Products for the Analysis of CCNE1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CCNE1 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001238 Sigma-Aldrich siRNA and siRNA Panels for CCNE1 Sigma-Aldrich shRNA Panels and shRNA for CCNE1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001238 NM_057182
REFSEQ mRNAs for CCNE1 gene (2 alternative transcripts): NM_001238.1 NM_057182.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001238 NM_057182
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001238                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001238                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001238  
Additional cDNA sequence: AK291549.1 BC035498.2 CR591189.1 CR593053.1 CR601172.1 M73812.1 M74093.1
8 DOTS entries : DT.100022532 DT.211154 DT.100720928 DT.121419930 DT.100842149 DT.65284654 DT.100719142 DT.91966702
24/82 AceView cDNA sequences (see all 82
):BM793183 NM_001238 CR591189 BX361099 AW771831 BX402709 BC035498 NM_057182 AW304866 CR593053 BQ653397 CR601172 BE887210 BM047945 BM045770 BX360890 BQ646961 M73812 BF980611 M74093 BE544205 BQ018270 AU156110 BF980866
highest scoring ESTs for CCNE1 :M73812 AA570076 AA592960 AA628312 AI186210 AI671049 AU135533 AU156110 AU157314 AW300786
Unigene Cluster for CCNE1: Cyclin E1 Hs.244723 [show with all ESTs ] Unigene Representative Sequence: BC035498 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for CCNE1 ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c SP1 :     -         -                         SP2 :             -                         SP3 :                                     SP4 :                                    
About this scheme ECgene alternative splicing isoforms for CCNE1 2 Ensembl transcripts including schematic representations : ENST00000262643
ENST00000357943
Expression for CCNE1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CCNE1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CCNE1 1 / 2 / 3
4 probe-sets matching CCNE1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGTCTGAACSOURCE GeneReport for Unigene cluster: Hs.244723 Expression variation in blood from EXPOLDB for CCNE1
UniProtKB/Swiss-Prot: CCNE1_HUMAN, P24864 Tissue specificity : Highly expressed in testis and placenta. Low levels in bronchial epithelialcells
Orthologs for CCNE1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CCNE1 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for CCNE1 ENSEMBL Gene Tree for CCNE1 Paralogs for CCNE1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CCNE1 gene CCNE2 2
SNPs/Variants for CCNE1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CCNE1 (up to first 250kb)
Disorders & Mutations for CCNE1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 123837 10/15 Novoseek disease relationships for CCNE1 gene (see all 15
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
retinoblastoma
47.99
2
16949911 (1), 12674332 (1)
cancer
39.60
10
16808878 (4), 16912169 (2), 15166955 (1), 18507837 (1) (see all 5 )
breast cancer
36.50
17
16929516 (2), 16912169 (2), 16849587 (2), 12466974 (1) (see all 8 )
primary tumor
35.89
1
11854029 (1)
tumors
33.61
22
12466974 (3), 16849587 (3), 11687642 (2), 10666388 (2) (see all 14 )
ovarian cancer
31.86
2
18281541 (2)
carcinoma
27.01
3
18047954 (1), 15770521 (1), 18008359 (1)
bladder cancer
26.84
4
10980118 (2), 18008359 (1)
hepatocellular carcinoma
18.90
1
19356046 (1)
gastric cancer
8.80
2
10666388 (2)
About this table Human Genome Epidemiology Navigator: CCNE1 (8 documents)
Medical News for CCNE1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CCNE1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/212 PubMed articles for CCNE1 gene (see all 212
): Isolation of three novel human cyclins by rescue of G1 cyclin (Cln) function in yeast. (PubMed id 1833066) 2, 3, 4 Lew D.J....Reed S.I. (1991) Molecular cloning and chromosomal localization of the human cyclin C (CCNC) and cyclin E (CCNE) genes: deletion of the CCNC gene in human tumors. (PubMed id 8833152) 1, 3, 4 Li H....Kidd V.J. (1996) Cyclin E2, a novel human G1 cyclin and activating partner of CDK2 and CDK3, is induced by viral oncoproteins. (PubMed id 9840943) 1, 3, 4 Zariwala M....Xiong Y. (1998) ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PubMed id 17525332) 3, 4 Matsuoka S.... Elledge S.J. (2007) NIRF induces G1 arrest and associates with Cdk2. (PubMed id 15178429) 3, 4 Li Y.... Kochi H. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Multisite phosphorylation by Cdk2 and GSK3 controls cyclin E degradation. (PubMed id 14536078) 3, 4 Welcker M.... Roberts J.M. (2003) Regulation of cyclin E transcription by E2Fs and retinoblastoma protein. (PubMed id 8649818) 3, 4 Geng Y.... Weinberg R.A. (1996) Activation of cyclin E/CDK2 is coupled to site-specific autophosphorylation and ubiquitin-dependent degradation of cyclin E. (PubMed id 8861947) 3, 4 Won K.A. and Reed S.I. (1996) Human cyclin E, a nuclear protein essential for the G1-to-S phase transition. (PubMed id 7739542) 3, 4 Ohtsubo M.... Pagano M. (1995)
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Genome Databases showing CCNE1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CCNE1
(According to HUGE )
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Specialized Databases showing CCNE1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CCNE1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CCNE1:
Antibodies & Assays for CCNE1   (CycE Kinase)
Search Tocris compounds for CCNE1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009