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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CCND3 Gene

protein-coding GIFtS: 71
GCID: GC06M041949

cyclin D3

Explore 83 diseases affiliated with
CCND3 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Cyclin D3¹ ²
D3-Type Cyclin²
G1/S-Specific Cyclin D3²
G1/S-Specific Cyclin-D3²

External Ids:	HGNC: 1585¹	Entrez Gene: 896²	Ensembl: ENSG00000112576⁷	OMIM: 123834⁵	UniProtKB: P30281³

Export aliases for CCND3 gene to outside databases

Previous GC identifers: GC06M041904 GC06M042010 GC06M041621

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CCND3:

The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a

dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases.

Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination

of each mitotic event. This cyclin forms a complex with and functions as a regulatory subunit of CDK4 or CDK6, whose

activtiy is required for cell cycle G1/S transition. This protein has been shown to interact with and be involved in

the phosphorylation of tumor suppressor protein Rb. The CDK4 activity associated with this cyclin was reported to be

necessary for cell cycle progression through G2 phase into mitosis after UV radiation. Several transcript variants

encoding different isoforms have been found for this gene. (provided by RefSeq, Oct 2008)

UniProtKB/Swiss-Prot: CCND3_HUMAN, P30281

Function: Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the

retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition.

Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent

transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates

RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic

signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its

transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation

and activity of the cyclin D-CDK4 complex

Gene Wiki entry for CCND3 (Cyclin D3)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.1 NT_007592.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CCND3 gene promoter:
AML1a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 4): CCND3 promoter sequence

Search SABiosciences Chromatin IP Primers for CCND3

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCND3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21

CCND3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCND3 gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M041949: view genomic region (about GC identifiers)

Start:	41,902,671 bp from pter	End:	42,018,095 bp from pter
Size:	115,425 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CCND3_HUMAN, P30281 (See protein sequence)

Recommended Name: G1/S-specific cyclin-D3

Size: 292 amino acids; 32520 Da

Subunit: Interacts with the CDK4 and CDK6 protein kinases to form a serine/threonine kinase holoenzyme complex. The

cyclin subunit imparts substrate specificity to the complex. Interacts with ATF5. Interacts with EIF3K. Component of

the ternary complex cyclin D/CDK4/CDKN1B required for nuclear translocation and modulation of CDK4-mediated kinase

activity. Can form similar complexes with either CDKN1A or CDKN2A

Subcellular location: Nucleus. Cytoplasm. Membrane. Note=Cyclin D-CDK4 complexes accumulate at the nuclear membrane and

are then translocated to the nucleus through interaction with KIP/CIP family members (By similarity)

1 PDB 3D structure from and Proteopedia for CCND3:

3G33 (3D)

Secondary accessions: B2RD63 B3KQ22 E9PAS4 E9PB36 Q5T8J0 Q6FG62 Q96F49

Alternative splicing: 4 isoforms: P30281-1 P30281-2 P30281-3 P30281-4 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCND3: NX_P30281

Post-translational modifications:

Polyubiquitinated by the SCF(FBXL2) complex, leading to proteasomal degradation¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P30281

CCND3 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (4 alternative transcripts):

NP_001129489.1 NP_001129597.1 NP_001129598.1 NP_001751.1

ENSEMBL proteins:

ENSP00000362082 ENSP00000426212 ENSP00000362078 ENSP00000362079 ENSP00000401595

ENSP00000397545 ENSP00000425986 ENSP00000421511 ENSP00000423242 ENSP00000425830

ENSP00000425334 ENSP00000420991

Reactome Protein details: P30281
Human Recombinant Protein Products:

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	Novus Biologicals CCND3 Proteins Novus Biologicals CCND3 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for CCND3

Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000307	cyclin-dependent protein kinase holoenzyme complex	IDA	8114739
GO:0005634	nucleus	IEA	--
GO:0005737	cytoplasm	IEA	--
GO:0016020	membrane	IEA	--

CCND3 for ontologies About GeneDecksing

CCND3 Antibody Products:

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	Novus Biologicals CCND3 Antibodies
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	Uscn Antibodies for CCND3
	ThermoFisher Antibody for CCND3

Assay Products for CCND3:

	Browse Kits and Assays available from EMD Millipore
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	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for CCND3
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for CCND3

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CCND3 for domains About GeneDecksing

4 InterPro domains/families:

IPR013763 Cyclin-like

IPR006671 Cyclin_N

IPR004367 Cyclin_C

IPR014400 Cyclin_A/B/D/E

Graphical View of Domain Structure for InterPro Entry P30281

ProtoNet protein and cluster: P30281

1 Blocks protein family: IPB006670 Cyclin

UniProtKB/Swiss-Prot: CCND3_HUMAN, P30281

Similarity: Belongs to the cyclin family. Cyclin D subfamily

Similarity: Contains 1 cyclin N-terminal domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: CCND3_HUMAN, P30281

Function: Regulatory component of the cyclin D3-CDK4 (DC) complex that phosphorylates and inhibits members of the

retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition.

Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent

transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates

RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic

signals. Also substrate for SMAD3, phosphorylating SMAD3 in a cell-cycle-dependent manner and repressing its

transcriptional activity. Component of the ternary complex, cyclin D3/CDK4/CDKN1B, required for nuclear translocation

and activity of the cyclin D-CDK4 complex

Genatlas biochemistry entry for CCND3:

cyclin D3,regulator of progression through G1 phase during the cell cycle 3,33/34kDa,overexpressed with CDKN1B in

agressive B cell lymphomas and in glioblastoma and gliosarcoma,involved in the loss of cell cycle control in a small

fraction of malignant gliomas

miRNA Products:		miRTarBase miRNAs that target CCND3: hsa-mir-34a (MIRT001010), hsa-mir-424 (MIRT000937), hsa-mir-16 (MIRT000940)

		OriGene 3'-UTR Clone (see all 4): CCND3 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCND3
		8/32 QIAGEN miScript miRNA Assays for microRNAs that regulate CCND3 (see all 32):
		hsa-miR-642a hsa-miR-15a hsa-miR-503 hsa-miR-301a hsa-miR-424 hsa-miR-409-5p hsa-miR-124 hsa-miR-330-3p

		SwitchGear 3'UTR luciferase reporter plasmid: CCND3 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCND3 (see all 7) OriGene shRNA RFP: CCND3 OriGene siRNA: CCND3
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCND3

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for CCND3

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCND3 (see all 6) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCND3 (see all 4) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 4): CCND3 (NM_001136017)
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Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CCND3
		Search LifeMap BioReagents cell lines for CCND3

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCND3

Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004693	cyclin-dependent protein kinase activity	IEA	--
GO:0005515	protein binding	IPI	--
GO:0019901	protein kinase binding	IPI	8114739

CCND3 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for CCND3:

Increased cell number in G1, s

Animal Models:
Mouse knock-out Ccnd3^tm1Pisc for CCND3
12 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Ccnd3):

behavior/neurological	cardiovascular system	cellular	growth/size	hematopoietic system
homeostasis/metabolism	immune system	liver/biliary system	mortality/aging	respiratory system
tumorigenesis	vision/eye

CCND3 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/30 super-pathways (see all 30) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Cell cycle_Cell cycle (generic schema)

	Cell cycle_Cell cycle (generic schema)	1.00			Cell cycle_Regulation of G1/S transition (part 2)	0.38
	Cell cycle Cell cycle (generic schema)	1.00			Cell cycle Regulation of G1/S transition (part 2)	0.38

Development IGF-RI signaling

	Development IGF-RI signaling	1.00			Signal transduction_AKT signaling	0.49
	Development_IGF-1 receptor signaling	0.99			Signal transduction AKT signaling	0.49

Wnt Signaling Pathway

	Wnt Signaling Pathway	1.00			DNA damage response (only ATM dependent)	0.35
	Wnt Signaling Pathway and Pluripotency	0.55			Wnt signaling pathway	0.30

Cyclins and Cell Cycle Regulation

	Cyclins and Cell Cycle Regulation	1.00			Cyclin D associated events in G1	0.32
	G1-S Phase Transition	0.67			G1 Phase	0.32

Cell cycle

	Cell cycle	1.00			G1 to S cell cycle control	0.38
	Cell cycle	0.57

Pathway sources
See GeneCards unified pathways
Show all pathways

5/9 EMD Millipore Pathways for CCND3 (see all 9)

	DNA damage ATM/ATR regulation of G1/S checkpoint
	Cell cycle Regulation of G1/S transition (part 2)
	Cytoskeleton remodeling FAK signaling
	Cell cycle Regulation of G1/S transition (part 1)
	Signal transduction AKT signaling

5/9 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CCND3 (see all 9)

	G1-S Phase Transition
	Breast Cancer Regulation by Stathmin1
	Cyclins and Cell Cycle Regulation
	IL-10 Pathway
	Molecular Mechanisms of Cancer

1 Cell Signaling Technology (CST) Pathway for CCND3

Cell Cycle / Checkpoint Control

5/9 GeneGo (Thomson Reuters) Pathways for CCND3 (see all 9)

	DNA damage ATM/ATR regulation of G1/S checkpoint
	Transcription Ligand-Dependent Transcription of Retinoid-Target genes
	Signal transduction AKT signaling
	Development IGF-1 receptor signaling
	Cell cycle Cell cycle (generic schema)

5/14 BioSystems Pathways for CCND3 (see all 14)

	Cell cycle
	DNA damage response (only ATM dependent)
	miRNAs involved in DDR
	G1 to S cell cycle control
	DNA damage response

5 Reactome Pathways for CCND3

	G1 Phase
	Mitotic G1-G1/S phases
	Cell Cycle
	Cell Cycle, Mitotic
	Cyclin D associated events in G1

5/6 Kegg Pathways (Kegg details for CCND3) (see all 6):

	Cell cycle
	p53 signaling pathway
	Wnt signaling pathway
	Focal adhesion
	Jak-STAT signaling pathway

CCND3 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for CCND3

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/127 Interacting proteins for CCND3 (P30281^{1, 2, 3} ENSP00000362082⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 127)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
EIF3K	Q9UBQ5²^,³, ENSP00000248342⁴	MINT-50583 MINT-50582 MINT-50584 I2D: score=3 STRING: ENSP00000248342
CDK4	P11802¹^,²^,³, ENSP00000257904⁴	EBI-375013,EBI-295644 MINT-50438 I2D: score=10 STRING: ENSP00000257904
CDK6	Q00534¹^,²^,³, ENSP00000265734⁴	EBI-375013,EBI-295663 MINT-50439 I2D: score=8 STRING: ENSP00000265734
CDKN1A	P38936¹^,²^,³, ENSP00000244741⁴	EBI-375013,EBI-375077 MINT-50441 I2D: score=7 STRING: ENSP00000244741
MCM10	Q7L590²^,³, ENSP00000354945⁴	MINT-50440 I2D: score=5 STRING: ENSP00000354945

About this table

Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001934	positive regulation of protein phosphorylation	IDA	8114739
GO:0007049	cell cycle	--	--
GO:0007165	signal transduction	IEA	--
GO:0042098	T cell proliferation	IEA	--
GO:0045737	positive regulation of cyclin-dependent protein kinase activity	IDA	8114739

CCND3 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

CCND3 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CCND3
10/38 Novoseek chemical compound relationships for CCND3 gene (see all 38) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
rapamycin	41	22	15131122 (5), 16985050 (4), 12393642 (1), 10849422 (1) (see all 7)
retinoic acid	38.4	27	16920920 (4), 16024653 (4), 12482873 (4), 17209053 (2) (see all 9)
betulinic acid	31	6	19102935 (3), 19107355 (3)
sulforaphane	29	3	12530531 (2), 15033759 (1)
butyrate	24.8	5	10716680 (2), 11029587 (1), 14526425 (1)
rottlerin	24.4	2	17407153 (1), 16959960 (1)
curcumin	21	3	12674762 (2), 12483537 (1)
phosphatidylinositol	19.1	2	16815849 (2)
silymarin	16.1	1	16322307 (1)
ly294002	15.8	1	16267832 (1)

Search CenterWatch for drugs/clinical trials and news about CCND3

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CCND3 gene (4 alternative transcripts):

NM_001136017.2 NM_001136125.1 NM_001136126.1 NM_001760.3

Unigene Cluster for CCND3:

Cyclin D3

Hs.534307 [show with all ESTs]

Unigene Representative Sequence: AL833425

18/21 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 21):

ENST00000372991(uc003orn.3 uc003oro.3) ENST00000511642 ENST00000372987(uc003orm.3)

ENST00000372988(uc003orp.3) ENST00000415497(uc011duk.2) ENST00000414200

ENST00000510503 ENST00000511686 ENST00000512426 ENST00000513956 ENST00000506555

ENST00000508143 ENST00000505064 ENST00000510058(uc011dul.1) ENST00000505672(uc011dum.1)

ENST00000511161 ENST00000505884 ENST00000514382

miRNA Products:		OriGene 3'-UTR Clone (see all 4): CCND3 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCND3
		8/32 QIAGEN miScript miRNA Assays for microRNAs that regulate CCND3 (see all 32):
		hsa-miR-642a hsa-miR-15a hsa-miR-503 hsa-miR-301a hsa-miR-424 hsa-miR-409-5p hsa-miR-124 hsa-miR-330-3p

		SwitchGear 3'UTR luciferase reporter plasmid: CCND3 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCND3

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCND3 (see all 6) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCND3 (see all 4) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 4): CCND3 (NM_001136017)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCND3
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCND3

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCND3 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat CCND3
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCND3
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCND3

Additional cDNA sequence:

AB209825.1 AK022376.1 AK055519.1 AK057206.1 AK096276.1 AK097856.1 AK299187.1 AK303452.1

AK315421.1 AL833425.1 BC011616.2 BC113829.1 CR542246.1 M90814.1 M92287.1

24/36 DOTS entries (see all 36):

DT.95272637 DT.92449495 DT.451799 DT.100655604 DT.92449485 DT.92449488 DT.121342198 DT.121342234

DT.100645664 DT.95272627 DT.100871371 DT.100039492 DT.100839600 DT.121342343 DT.100803363 DT.70102100

DT.121342215 DT.121342253 DT.100655598 DT.91904779 DT.92449493 DT.100865398 DT.100655611 DT.100803504

24/563 AceView cDNA sequences (see all 563):

BP338278 CR613159 BX400847 NM_001760 AI276632 BU164011 BM753024 BQ646356

BG478369 CB153457 AK057206 AU100320 BX402238 BQ690107 BP373485 CN483007

BP337956 BX400719 BC011616 BQ669648 CR620441 BG391323 BU169314 BU147251

GeneLoc Exon Structure

5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CCND3 (see all 7) About this scheme

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5	^	6	^	7a	·	7b	·	7c	^	8a	·	8b	·	8c	·	8d
SP1:					-				-		-								-
SP2:									-		-								-
SP3:					-		-		-		-								-
SP4:									-		-
SP5:									-		-				-		-		-

ECgene alternative splicing isoforms for CCND3

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CCND3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCCTCCTCTC

About this image

CCND3 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Eye

Inner Nuclear Layer

Mature Muller Glia Cells

Selective marker (cell-identifying gene)

Muller Glia, Retina

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See CCND3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCND3

SOURCE GeneReport for Unigene cluster: Hs.534307

SABiosciences Expression via Pathway-Focused PCR Arrays including CCND3:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCND3 gene from 6/24 species (see all 24) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	CCND3¹	cyclin D3	73.91(n) 73.45(a)		419928 NM_001008453.1 NP_001008453.1
lizard (Anolis carolinensis)	Reptilia	CCND3⁶	--	71(a)	1 ↔ 1	4(119231298-119256570)
fruit fly (Drosophila melanogaster)	Insecta	CycD³	cell proliferation cyclin-dependent protein kinase, more	39(a)		--
worm (Caenorhabditis elegans)	Secernentea	cyd-1⁶	CYclin D family member (cyd-1)	13(a)	1 → many	II(12980522-12993049)
thale cress (Arabidopsis thaliana)	eudicotyledons	SDS⁶	cyclin-SDS	7(a)	possible ortholog	1(5079407-5082520)
rice (Oryza sativa)	Liliopsida	--	cyclin, putative, expressed	8(a)	possible ortholog	3(6555387-6561025)

ENSEMBL Gene Tree for CCND3 (if available)
TreeFam Gene Tree for CCND3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for CCND3 gene

CCNO² CCNE1² CCNB2² CCNE2² CCNB3² CCNB1² CCND1² CCNA1²

CCND2² CCNA2²

4 SIMAP similar genes for CCND3 using alignment to 8 protein entries: CCND3_HUMAN (see all proteins):

CCND2 CCND1 cyclin D1 CCNB2V

CCND3 for paralogs About GeneDecksing

2 Pseudogenes.org Pseudogenes for CCND3
PGOHUM00000238391 PGOHUM00000235102

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs3218114^1,2	C,F,H,	--	41902352(-)	`TGGTTG/AAGAAA`	4	--	ds500¹		13		NS NA WA EA	1200
rs201786454^1,2		--	41902385(+)	`TATCC-/TTTTTT`	4	--	ds500¹		0	--	--	--	--
rs3218113^1,2	C,F,H,	--	41902394(-)	`CATTTT/AAAAAA`	4	--	ds500¹		5		NS EA	550
rs185997800^1,2		--	41902460(+)	`TCTTTA/TTTGTG`	4	--	ds500¹		0	--	--	--	--
rs3218111^1,2	C,	--	41902467(-)	`AAAATA/G/TGCACA`	4	--	ds500¹		1		NS	174
rs3218110^1,2	C,F,	--	41902509(-)	`TTTATAAT/-GTGAC`	4	--	ds500¹		1		NS	178
rs10560080^1,2	C	--	41902511(+)	`CACAT-/TATAAAgc`	4	--	ds500¹		2		NA	4
rs144960851^1,2		--	41902526(+)	`AACTGA/GCTATA`	4	--	ds500¹		0	--	--	--	--
rs3218109^1,2	C,F,	--	41902559(-)	`AGGCTT/CTGTGG`	4	--	ds500¹		2		NS WA	296
rs3218108^1,2	C,F,A,H,	--	41902655(-)	`GGTAAG/ATCTAT`	4	--	ds500¹		26		NS EA NA WA	3358

HapMap Linkage Disequilibrium report for CCND3 (41902671 - 42018095 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for CCND3
1 CNV: 99517
2 Indels: 28303 47120

SABiosciences Cancer Mutation PCR Assays

2 SABiosciences qBiomarker Copy Number PCR Arrays containing CCND3:

Glioma

Oncogenes & Tumor Suppressor Genes 384HC

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CCND3 for disorders           About GeneDecksing

OMIM gene information: 123834    OMIM disorders: --

20/83 diseases for CCND3 (see all 83):    About MalaCards

malignant peripheral nerve sheath tumor diffuse large b-cell lymphoma b-cell lymphomas plasma cell leukemia

laryngeal squamous cell carcinoma non-hodgkin lymphoma squamous cell carcinoma gastrointestinal stromal tumor

gliosarcoma herpes simplex burkitt's lymphoma pituitary adenoma

oral squamous cell carcinoma mantle cell lymphoma malignant glioma lymphoblastic leukemia

differentiating neuroblastoma giant cell tumor aplastic anemia hodgkin's lymphoma

2 diseases from the University of Copenhagen DISEASES database for CCND3:

Retinoblastoma Lymphoma

10/62 Novoseek disease relationships for CCND3 gene (see all 62) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
retinoblastoma	77.4	25	12421932 (1), 9154817 (1), 14559823 (1), 16267832 (1) (see all 25)
plasma cell myeloma	54.9	1	15305377 (1)
lymphoma b-cell	54.2	16	11895902 (3), 12647795 (2), 20107311 (2), 10397744 (1) (see all 11)
tumors	49.1	73	15362377 (4), 17885491 (2), 8816437 (2), 15671552 (2) (see all 44)
burkitt lymphoma	47.1	1	10512172 (1)
lymphoma	43.6	27	11242797 (3), 19639271 (3), 17300668 (2), 9376597 (2) (see all 11)
cancer	43	10	14666699 (2), 15475449 (2), 11922774 (1), 20372804 (1) (see all 8)
monoclonal gammopathy	41	1	19996118 (1)
leukemia lymphocytic chronic	35.9	3	11896535 (1), 19704260 (1), 9376597 (1)
plasma cell leukemia	32.8	1	15543617 (1)

Human Genome Epidemiology (HuGE) Navigator: CCND3 (19 documents)
Tumor Gene Database (TGDB): CCND3

Export disorders for CCND3 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for CCND3 gene, integrated from 9 sources (see all 485):
(articles sorted by number of sources associating them with CCND3)

Utopia: connect your pdf to the dynamic
world of online information

Genomic organization, chromosomal localization, and independent expression of human cyclin D genes. (PubMed id 1386335)^{1, 2, 3, 9} Inaba T....Look A.T. (1992)
Identification of the p28 subunit of eukaryotic initiation factor 3(eIF3k) as a new interaction partner of cyclin D3. (PubMed id 15327989)^{1, 2, 9} Shen X.... Gu J. (2004)
The structure of CDK4/cyclin D3 has implications for models of CDK activation. (PubMed id 19237555)^{1, 2, 9} Takaki T....Noble M.E. (2009)
Cyclin D3 interacts with human activating transcription factor 5 and potentiates its transcription activity. (PubMed id 15358120)^{1, 2, 9} Liu W.... Gu J. (2004)
Cloning and characterization of human cyclin D3, a cDNA closely related in sequence to the PRAD1/cyclin D1 proto-oncogene. (PubMed id 1383201)^{1, 2, 9} Motokura T.... Arnold A. (1992)
Molecular cloning and chromosomal mapping of CCND genes encoding human D-type cyclins. (PubMed id 1386336)^{1, 2, 9} Xiong Y.... Ward D.C. (1992)
Regulated activating Thr172 phosphorylation of cyclin-dependent kinase 4(CDK4): its relationship with cyclins and CDK 'inhibitors'. (PubMed id 16782892)^{1, 2, 9} Bockstaele L....Coulonval K. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)^{1, 2} Mungall A.J.... Beck S. (2003)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 896	HGNC: 1585	AceView: CCND3	Ensembl:ENSG00000112576	euGenes: HUgn896
ECgene: CCND3	Kegg: 896	H-InvDB: CCND3

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CCND3	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CCND3	Genetics and Cytogenetics in Oncology and Haematology
NIEHS-SNPs	http://egp.gs.washington.edu/data/ccnd3/

Intellectual Property for CCND3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CCND3 gene:
Search GeneIP for patents involving CCND3

GeneCards and IP:
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cyclin D3

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