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Aliases for CCND2-AS1 Gene

Subcategory (RNA class) for CCND2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCND2-AS1 Gene

  • CCND2 Antisense RNA 1 2 3 5

External Ids for CCND2-AS1 Gene

Previous GeneCards Identifiers for CCND2-AS1 Gene

  • GC00U934680

Summaries for CCND2-AS1 Gene

GeneCards Summary for CCND2-AS1 Gene

CCND2-AS1 (CCND2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCND2-AS1 Gene

Genomics for CCND2-AS1 Gene

Regulatory Elements for CCND2-AS1 Gene

Enhancers for CCND2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G004164 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +111.2 111205 1.7 HDGF ATF1 PKNOX1 ZNF2 GLIS2 ZNF207 ZNF263 SP3 TSHZ1 ZNF610 CCND2 CCND2-AS1 CCND2-AS2 GC12P005328 LOC105369612
GH12G004030 1.6 FANTOM5 Ensembl ENCODE 11.5 +243.7 243742 4.2 HDGF FOXA2 PKNOX1 ARNT ZFP64 SIN3A FEZF1 GLIS2 KLF7 FOS CCND2 CCND2-AS2 CCND2-AS1 ENSG00000256969 HSPA8P5 RPL18P9 PARP11
GH12G004106 1.4 Ensembl ENCODE dbSUPER 12.4 +168.9 168922 1.5 HDAC1 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 RAD21 RFX5 ZNF143 ZNF207 CCND2-AS1 CCND2 CCND2-AS2 HSPA8P5 GC12P005340
GH12G004214 1.4 FANTOM5 Ensembl ENCODE 11.9 +60.3 60275 2.3 HDAC1 TBP PKNOX1 TBL1XR1 WRNIP1 RFX5 RELB ETV6 IKZF2 CREM CCND2-AS2 CCND2 CCND2-AS1 PARP11 GC12P005334
GH12G003961 1.2 FANTOM5 Ensembl ENCODE 11.7 +313.5 313470 1.7 SCRT1 CTCF PKNOX1 ESRRA NFIB NFIC CBX8 SMARCA4 SCRT2 CCND2-AS2 CCND2-AS1 CCND2 PARP11 CRACR2A LOC105369608 PIR49890
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCND2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000266886 1584 2801 HDGF PKNOX1 ATF1 ZNF2 ETS1 GLIS2 ZNF263 SP3 GTF2B TSHZ1

Genomic Location for CCND2-AS1 Gene

Chromosome:
12
Start:
4,248,765 bp from pter
End:
4,276,184 bp from pter
Size:
27,420 bases
Orientation:
Minus strand

Genomic View for CCND2-AS1 Gene

Genes around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCND2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCND2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCND2-AS1 Gene

Proteins for CCND2-AS1 Gene

Post-translational modifications for CCND2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCND2-AS1 Gene

Domains & Families for CCND2-AS1 Gene

Gene Families for CCND2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCND2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCND2-AS1 Gene

Function for CCND2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCND2-AS1 Gene

Localization for CCND2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCND2-AS1 Gene

Pathways & Interactions for CCND2-AS1 Gene

SuperPathways for CCND2-AS1 Gene

No Data Available

Interacting Proteins for CCND2-AS1 Gene

Gene Ontology (GO) - Biological Process for CCND2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCND2-AS1 Gene

Drugs & Compounds for CCND2-AS1 Gene

No Compound Related Data Available

Transcripts for CCND2-AS1 Gene

mRNA/cDNA for CCND2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCND2-AS1 Gene

No ASD Table

Relevant External Links for CCND2-AS1 Gene

GeneLoc Exon Structure for
CCND2-AS1
ECgene alternative splicing isoforms for
CCND2-AS1

Expression for CCND2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCND2-AS1 Gene

genes like me logo Genes that share expression patterns with CCND2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCND2-AS1 Gene

Orthologs for CCND2-AS1 Gene

Evolution for CCND2-AS1 Gene

ENSEMBL:
Gene Tree for CCND2-AS1 (if available)
TreeFam:
Gene Tree for CCND2-AS1 (if available)

No data available for Orthologs for CCND2-AS1 Gene

Paralogs for CCND2-AS1 Gene

No data available for Paralogs for CCND2-AS1 Gene

Variants for CCND2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCND2-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000350320 -- 4,261,798(+) CTGGT(A/T)TGAGA intron-variant
rs1000472058 -- 4,273,785(+) CAGGG(C/G)AGAGC intron-variant, utr-variant-5-prime
rs1000518282 -- 4,260,537(+) CACCT(C/G)TTCTT intron-variant
rs1000667023 -- 4,269,279(+) GCGCT(C/G)CCCAG intron-variant
rs1000839817 -- 4,269,599(+) CCCAA(A/C)GCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCND2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1040098 CNV gain 25217958
nsv1136148 CNV deletion 24896259
nsv473351 CNV novel sequence insertion 20440878
nsv483060 CNV loss 15286789
nsv520791 CNV loss 19592680
nsv832317 CNV gain 17160897

Relevant External Links for CCND2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCND2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCND2-AS1 Gene

Disorders for CCND2-AS1 Gene

Relevant External Links for CCND2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCND2-AS1

No disorders were found for CCND2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCND2-AS1 Gene

Publications for CCND2-AS1 Gene

  1. Highly expressed lncRNA CCND2-AS1 promotes glioma cell proliferation through Wnt/I^-catenin signaling. (PMID: 27923660) Zhang H. … Sun Y.H. (Biochem. Biophys. Res. Commun. 2016) 2 3 64

Products for CCND2-AS1 Gene

Sources for CCND2-AS1 Gene

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