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Aliases for CCND2-AS1 Gene

Subcategory (RNA class) for CCND2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCND2-AS1 Gene

  • CCND2 Antisense RNA 1 2 3 5
  • CCND2 Antisense RNA 2 2 3
  • CCND2-AS2 3

External Ids for CCND2-AS1 Gene

Previous HGNC Symbols for CCND2-AS1 Gene

  • CCND2-AS2

Previous GeneCards Identifiers for CCND2-AS1 Gene

  • GC00U934680

Summaries for CCND2-AS1 Gene

GeneCards Summary for CCND2-AS1 Gene

CCND2-AS1 (CCND2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CCND2-AS1 include Nervous System Cancer.

Additional gene information for CCND2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCND2-AS1 Gene

Genomics for CCND2-AS1 Gene

Regulatory Elements for CCND2-AS1 Gene

Enhancers for CCND2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H004030 1.6 FANTOM5 Ensembl ENCODE 11.5 +243.7 243742 4 PKNOX1 ARNT ZFP64 INSM2 SIN3A FEZF1 RFX5 GLIS2 SCRT2 FOS CCND2 CCND2-AS1 ENSG00000255920 ENSG00000256969 HSPA8P5 RPL18P9 PARP11
GH12H004164 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +111.2 111205 1 HDGF ZNF687 TBL1XR1 MAX DPF2 GLIS2 POLR2A ZNF692 EED NBN CCND2 CCND2-AS1 ENSG00000255920 GC12P005492 LOC105369612
GH12H004214 1.4 FANTOM5 Ensembl ENCODE 11.9 +60.3 60275 2 HDAC1 PKNOX1 TBL1XR1 BATF ATF7 ETV6 RUNX3 IKZF2 CREM SMARCA5 CCND2 ENSG00000255920 CCND2-AS1 PARP11 GC12P005501
GH12H004106 1.3 Ensembl ENCODE dbSUPER 12.4 +168.9 168922 1 HDGF CTCF PKNOX1 TBL1XR1 BATF RAD21 RELA RFX5 SMC3 ZNF143 CCND2 CCND2-AS1 ENSG00000255920 HSPA8P5 GC12P005509
GH12H003997 1.1 Ensembl ENCODE 12.4 +276.8 276841 3 ELF3 SOX13 TFAP4 FOXA2 ATF1 BMI1 RFX5 RARA TEAD3 SCRT2 CCND2 CCND2-AS1 ENSG00000255920 LOC105369611 GC12M003967
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCND2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000266886 1584 2801 HDGF PKNOX1 ATF1 ZNF2 ETS1 GLIS2 ZNF143 ATF7 RUNX3 SP3

Genomic Location for CCND2-AS1 Gene

Chromosome:
12
Start:
4,248,765 bp from pter
End:
4,276,184 bp from pter
Size:
27,420 bases
Orientation:
Minus strand

Genomic View for CCND2-AS1 Gene

Genes around CCND2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCND2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCND2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCND2-AS1 Gene

Proteins for CCND2-AS1 Gene

Post-translational modifications for CCND2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCND2-AS1 Gene

Domains & Families for CCND2-AS1 Gene

Gene Families for CCND2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCND2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCND2-AS1 Gene

Function for CCND2-AS1 Gene

Phenotypes From GWAS Catalog for CCND2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCND2-AS1 Gene

Localization for CCND2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCND2-AS1 Gene

Pathways & Interactions for CCND2-AS1 Gene

SuperPathways for CCND2-AS1 Gene

No Data Available

Interacting Proteins for CCND2-AS1 Gene

Gene Ontology (GO) - Biological Process for CCND2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCND2-AS1 Gene

Drugs & Compounds for CCND2-AS1 Gene

No Compound Related Data Available

Transcripts for CCND2-AS1 Gene

mRNA/cDNA for CCND2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCND2-AS1 Gene

No ASD Table

Relevant External Links for CCND2-AS1 Gene

GeneLoc Exon Structure for
CCND2-AS1
ECgene alternative splicing isoforms for
CCND2-AS1

Expression for CCND2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCND2-AS1 Gene

genes like me logo Genes that share expression patterns with CCND2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCND2-AS1 Gene

Orthologs for CCND2-AS1 Gene

Evolution for CCND2-AS1 Gene

ENSEMBL:
Gene Tree for CCND2-AS1 (if available)
TreeFam:
Gene Tree for CCND2-AS1 (if available)

No data available for Orthologs for CCND2-AS1 Gene

Paralogs for CCND2-AS1 Gene

No data available for Paralogs for CCND2-AS1 Gene

Variants for CCND2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCND2-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000350320 -- 4,261,798(+) CTGGT(A/T)TGAGA intron-variant
rs1000472058 -- 4,273,785(+) CAGGG(C/G)AGAGC intron-variant, utr-variant-5-prime
rs1000518282 -- 4,260,537(+) CACCT(C/G)TTCTT intron-variant
rs1000667023 -- 4,269,279(+) GCGCT(C/G)CCCAG intron-variant
rs1000839817 -- 4,269,599(+) CCCAA(A/C)GCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCND2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1040098 CNV gain 25217958
nsv1136148 CNV deletion 24896259
nsv473351 CNV novel sequence insertion 20440878
nsv483060 CNV loss 15286789
nsv520791 CNV loss 19592680
nsv832317 CNV gain 17160897

Relevant External Links for CCND2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCND2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCND2-AS1 Gene

Disorders for CCND2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CCND2-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
nervous system cancer
  • malignant neoplasm of nervous system
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CCND2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCND2-AS1
genes like me logo Genes that share disorders with CCND2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCND2-AS1 Gene

Publications for CCND2-AS1 Gene

  1. Highly expressed lncRNA CCND2-AS1 promotes glioma cell proliferation through Wnt/β-catenin signaling. (PMID: 27923660) Zhang H … Sun YH (Biochemical and biophysical research communications 2017) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CCND2-AS1 Gene

Sources for CCND2-AS1 Gene

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