CCNB3 Gene
protein-coding GIFtS: 55
GCID: GC0XP049967
|
|
cyclin B3
| |
Aliases
for CCNB3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Cyclin B31 2 | | G2/Mitotic-Specific Cyclin-B32 | | CYCB33 |
Export aliases for CCNB3 gene to outside databasesPrevious GC identifers: GC0XP048582 GC0XP048040 GC0XP048722 GC0XP048944 GC0XP049860 GC0XP047471 |
Summaries
for CCNB3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for CCNB3:
The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by adramatic periodicity in protein abundance through the cell cycle. Cyclins function as positive regulators ofcyclin-dependent kinases (CDKs), and thereby play an essential role in the control of the cell cycle. Differentcyclins exhibit distinct expression and degradation patterns, which contribute to the temporal coordination of eachmitotic event. Studies of similar genes in chicken and drosophila suggest that this cyclin may associate with CDC2 andCDK2 kinases, and may be required for proper spindle reorganization and restoration of the interphase nucleus.Alternatively spliced transcript variants encoding different isoforms have been described for this gene. (provided byRefSeq, Oct 2011)
UniProtKB/Swiss-Prot: CCNB3_HUMAN, Q8WWL7Function: Cyclins are positive regulatory subunits of the cyclin-dependent kinases (CDKs), and thereby play anessential role in the control of the cell cycle, notably via their destruction during cell division. Its tissuespecificity suggest that it may be required during early meiotic prophase I
|
Genomic Views
for CCNB3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_011638.13
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CCNB3 gene promoter:
POU2F1 POU2F1a POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) TGIF POU3F2 Hlf
Other transcription factors
Search SABiosciences Chromatin IP Primers for CCNB3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCNB3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp11 Ensembl cytogenetic band: Xp11.22 HGNC cytogenetic band: Xp11CCNB3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP049967: view genomic region
(about GC identifiers)
Start:
|
49,967,364 bp from pter |
End:
|
50,094,913 bp from pter |
Size:
|
127,550 bases |
Orientation:
|
plus strand |
|
Proteins
for CCNB3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CCNB3_HUMAN, Q8WWL7 (See
protein sequence)Recommended Name: G2/mitotic-specific cyclin-B3 Size: 1395 amino acids; 157916 Da
Subunit: Interacts with CDK2 kinase
Subcellular location: Nucleus
Secondary accessions: B1AQI5 B1AQI6 Q96SB5 Q96SB6 Q96SB7 Q9NT38Alternative splicing: 3 isoforms: Q8WWL7-1 Q8WWL7-2 Q8WWL7-3 Explore the universe of human proteins at neXtProt for CCNB3: NX_Q8WWL7
Post-translational modifications:
Ubiquitinated (Probable). Ubiquitination leads to its degradation during anaphase entry, after degradation of CCNB11
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8WWL7
CCNB3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_149020.2 NP_391990.1
ENSEMBL proteins: ENSP00000365210 ENSP00000365206 ENSP00000431645 ENSP00000338682 ENSP00000276014
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
CCNB3 for ontologies About GeneDecksing
CCNB3 Antibody Products:
Assay Products for CCNB3: |
Protein
Domains /
Families
for CCNB3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
CCNB3 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8WWL7ProtoNet protein and cluster: Q8WWL7 2 Blocks protein families: IPB001092 Basic helix-loop-helix dimerization domain bHLH IPB006670 Cyclin
UniProtKB/Swiss-Prot: CCNB3_HUMAN, Q8WWL7Domain: The N-terminal destruction box (D-box) probably acts as a recognition signal for degradation via theubiquitin-proteasome pathway (By similarity)Similarity: Belongs to the cyclin family. Cyclin AB subfamily |
Function
for CCNB3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: CCNB3_HUMAN, Q8WWL7Function: Cyclins are positive regulatory subunits of the cyclin-dependent kinases (CDKs), and thereby play anessential role in the control of the cell cycle, notably via their destruction during cell division. Its tissuespecificity suggest that it may be required during early meiotic prophase I
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCNB3 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNB3 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table
CCNB3 for ontologies About GeneDecksing
4 GenomeRNAi human phenotypes for CCNB3:
|
Pathways & Interactions
for CCNB3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways - 5/15 super-pathways (see all 15) About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Cell cycle_Spindle assembly and chromosome separation | | | 2 | Cell cycle_Cell cycle (generic schema) | | | 3 | Cell cycle Chromosome condensation in prometaphase | | | 4 | Cell cycle Role of APC in cell cycle regulation | | | 5 | p53 signaling pathway | |
Pathway sources
See GeneCards unified pathways
Show all pathways
5 EMD Millipore Pathways for CCNB3
5/8 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CCNB3 (see all 8)
4  GeneGo (Thomson Reuters) Pathways for CCNB3
2  BioSystems Pathways for CCNB3
3 
Kegg Pathways (Kegg details for CCNB3):
CCNB3 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CCNB3
STRING Interaction
Network Preview (showing 5 interactants - click image to see 19)
5/21 Interacting proteins for CCNB3 (Q8WWL71, 2, 3 ENSP000002760144) via UniProtKB, MINT, STRING, and/or I2D (see all 21)About this table
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000079 | regulation of cyclin-dependent protein kinase activity |
IEA | -- | | GO:0007126 | meiosis |
IEA | -- | | GO:0010389 | regulation of G2/M transition of mitotic cell cycle |
IEA | -- | | GO:0051301 | cell division |
IEA | -- |
CCNB3 for ontologies About GeneDecksing
|
Drugs & Compounds
for CCNB3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CCNB3
Search CenterWatch for drugs/clinical trials and news about CCNB3
|
Transcripts
for CCNB3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CCNB3 gene (3 alternative transcripts): NM_033031.2 NM_033670.2 NM_033671.1 Unigene Clusters for CCNB3: Cyclin B3 Hs.130310 [show with all ESTs], Hs.722420 [show with all ESTs], Hs.722421 , Hs.740165 Unigene Representative Sequences: AJ416458, DB063071, AJ421672, AK2924548 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000493507 ENST00000491907 ENST00000376042(uc004dox.4) ENST00000376038(uc004doz.3)
ENST00000476167(uc010njq.3) ENST00000487204(uc004dpa.3) ENST00000348603
ENST00000276014(uc004doy.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCNB3 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCNB3 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): CCNB3 (NM_033670) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCNB3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCNB3 |
Additional cDNA sequence: AK292454.1 3 DOTS entries: DT.75117232 DT.95366441 DT.95312677 24/34 AceView cDNA sequences (see all 34): BX508495 AL045650 AI655746 AL137550 AI733558 CA428595 CD634655 AJ314764 NM_033670 AW594177 NM_033031 CD105827 CD634653 AI962445 CA428593 AJ416458 AI377267 AI792329 AI989710 AI637771 AJ314766 NM_033671 CD634656 AJ314765
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for CCNB3 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for CCNB3
|
Expression
for CCNB3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CCNB3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAAATCAACA
About this image
See CCNB3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCNB3
SOURCE GeneReport for Unigene clusters: Hs.130310 Hs.722420 Hs.722421 Hs.740165
UniProtKB/Swiss-Prot: CCNB3_HUMAN, Q8WWL7Tissue specificity: Testis specific. In testis, it is expressed in developing germ cells, but not in Leydig cells.Weakly or not expressed in other tissues
SABiosciences Custom PCR Arrays for CCNB3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCNB3
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNB3 |
Orthologs
for CCNB3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for CCNB3 gene from 8/27 species (see all 27) About this table
ENSEMBL Gene Tree for CCNB3 (if available)
TreeFam Gene Tree for CCNB3 (if available) |
Paralogs
for CCNB3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CCNB3 gene
- CCND32 CCNO2 CCNE12 CCNB22 CCNE22 CCNB12 CCND12 CCNA12
- CCND22 CCNA22
2 SIMAP similar genes for CCNB3 using alignment to 2 protein entries: CCNB3_HUMAN (see all proteins):CCNB2 CCNB1
CCNB3 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for CCNB3
PGOHUM00000235169
|
Genomic Variants
for CCNB3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CCNB3 (49967364 - 50094913 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCNB3: --
Locus Specific Mutation Databases (LSDB): CCNB3
| SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for CCNB3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
CCNB3 for disorders About GeneDecksing
OMIM gene information: 300456
OMIM disorders: --
11  diseases for CCNB3: About MalaCardsperipheral primitive neuroectodermal tumor adenomatous polyposis coli primitive neuroectodermal tumor neuroectodermal tumors
polyposis immunodeficiency neuronitis sarcoma
breast cancer adenocarcinoma pancreatitis
Export disorders for CCNB3 gene to outside databases
|
Publications
for CCNB3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CCNB3 gene, integrated from 9 sources (see all 30):
(articles sorted by number of sources associating them with CCNB3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Characterization and expression of mammalian cyclin b3, a prepachytene meiotic cyclin. (PubMed id 12185076)1, 2, 3, 9 Nguyen T.B.... Koff A. (2002)
- Molecular cloning, gene localization, and structure of human cyclin B3. (PubMed id 11846420)1, 2, 3, 9 Lozano J.-C....Picard A. (2002)
- Identification of a novel vertebrate cyclin: cyclin B3 shares properties with both A- and B-type cyclins. (PubMed id 8313904)1, 9 Gallant P. and Nigg E.A. (1994)
- A new subtype of bone sarcoma defined by BCOR-CCNB3 gene fusion. (PubMed id 22387997)1 Pierron G.... Delattre O. (2012)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Proteomic identification of overexpressed adenomatous polyposis coli and cyclin B3 during endoderm differentiation from human embryo nic stem cells. (PubMed id 21404461)1 Lee D.H....Kim S.K. (2011)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (2006)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
|
External Searches for CCNB3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CCNB3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CCNB3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCNB3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CCNB3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for CCNB3 gene:
Search GeneIP for patents involving CCNB3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CCNB3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCNB3 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCNB3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCNB3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCNB3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCNB3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCNB3 |
| |
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| |  |  |  |  | | | | |
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 | | | CCNB3 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCNB3 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCNB3 |
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