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Aliases for CCNA1 Gene

Aliases for CCNA1 Gene

  • Cyclin A1 2 3
  • Cyclin-A1 3
  • CT146 3

External Ids for CCNA1 Gene

Summaries for CCNA1 Gene

Entrez Gene Summary for CCNA1 Gene

  • The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. The cyclin encoded by this gene was shown to be expressed in testis and brain, as well as in several leukemic cell lines, and is thought to primarily function in the control of the germline meiotic cell cycle. This cyclin binds both CDK2 and CDC2 kinases, which give two distinct kinase activities, one appearing in S phase, the other in G2, and thus regulate separate functions in cell cycle. This cyclin was found to bind to important cell cycle regulators, such as Rb family proteins, transcription factor E2F-1, and the p21 family proteins. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for CCNA1 Gene

CCNA1 (Cyclin A1) is a Protein Coding gene. Among its related pathways are Pathways in cancer and GPCR Pathway. GO annotations related to this gene include protein kinase binding. An important paralog of this gene is CCND2.

UniProtKB/Swiss-Prot for CCNA1 Gene

  • May be involved in the control of the cell cycle at the G1/S (start) and G2/M (mitosis) transitions. May primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells.

Gene Wiki entry for CCNA1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNA1 Gene

Genomics for CCNA1 Gene

Genomic Location for CCNA1 Gene

Start:
36,431,830 bp from pter
End:
36,442,882 bp from pter
Size:
11,053 bases
Orientation:
Plus strand

Genomic View for CCNA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCNA1 Gene

Regulatory Elements for CCNA1 Gene

Transcription factor binding sites by QIAGEN in the CCNA1 gene promoter:

Proteins for CCNA1 Gene

  • Protein details for CCNA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P78396-CCNA1_HUMAN
    Recommended name:
    Cyclin-A1
    Protein Accession:
    P78396
    Secondary Accessions:
    • B7Z7E3
    • Q5T3V0
    • Q5U0G2
    • Q8IY91

    Protein attributes for CCNA1 Gene

    Size:
    465 amino acids
    Molecular mass:
    52358 Da
    Quaternary structure:
    • Interacts with the CDK2 and the CDC2 protein kinases to form a serine/threonine kinase holoenzyme complex. The cyclin subunit imparts substrate specificity to the complex. Does not bind CDK4 and CDK5 (in vitro). The cyclin A1-CDK2 complex interacts with transcription factor E2F-1 and RB proteins. Found in a complex with CDK2, CABLES1 and CCNE1 (By similarity). Interacts with INCA1 and KLHDC9.

    Alternative splice isoforms for CCNA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCNA1 Gene

Proteomics data for CCNA1 Gene at MOPED

Post-translational modifications for CCNA1 Gene

  • Polyubiquitinated via Lys-11-linked ubiquitin by the anaphase-promoting complex (APC/C), leading to its degradation by the proteasome. Deubiquitinated and stabilized by USP37 enables entry into S phase.

Other Protein References for CCNA1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for CCNA1 Gene

Domains for CCNA1 Gene

Protein Domains for CCNA1 Gene

Suggested Antigen Peptide Sequences for CCNA1 Gene

Graphical View of Domain Structure for InterPro Entry

P78396

UniProtKB/Swiss-Prot:

CCNA1_HUMAN
Family:
  • Belongs to the cyclin family. Cyclin AB subfamily.:
    • P78396
genes like me logo Genes that share domains with CCNA1: view

No data available for Gene Families for CCNA1 Gene

Function for CCNA1 Gene

Molecular function for CCNA1 Gene

GENATLAS Biochemistry: cyclin A1,complexing with CDK2,expressed in meiotic cell in the testis and brain and in several leukemic cell lines,regulator of cell-cycle
UniProtKB/Swiss-Prot Function: May be involved in the control of the cell cycle at the G1/S (start) and G2/M (mitosis) transitions. May primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells.

Gene Ontology (GO) - Molecular Function for CCNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15232106
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CCNA1: view
genes like me logo Genes that share phenotypes with CCNA1: view

Animal Models for CCNA1 Gene

MGI Knock Outs for CCNA1:

miRNA for CCNA1 Gene

miRTarBase miRNAs that target CCNA1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for CCNA1 Gene

Localization for CCNA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCNA1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCNA1 Gene COMPARTMENTS Subcellular localization image for CCNA1 gene
Compartment Confidence
cytoskeleton 4
cytosol 4
nucleus 4
mitochondrion 1

Gene Ontology (GO) - Cellular Components for CCNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm TAS --
GO:0005829 cytosol TAS 9041194
GO:0015630 microtubule cytoskeleton IDA --
genes like me logo Genes that share ontologies with CCNA1: view

Pathways for CCNA1 Gene

genes like me logo Genes that share pathways with CCNA1: view

Gene Ontology (GO) - Biological Process for CCNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA --
GO:0000082 G1/S transition of mitotic cell cycle TAS --
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle TAS --
GO:0000086 G2/M transition of mitotic cell cycle TAS --
GO:0000278 mitotic cell cycle TAS --
genes like me logo Genes that share ontologies with CCNA1: view

Compounds for CCNA1 Gene

(2) Novoseek inferred chemical compound relationships for CCNA1 Gene

Compound -log(P) Hits PubMed IDs
retinoic acid 22.1 12
vegf 16.9 13
genes like me logo Genes that share compounds with CCNA1: view

Transcripts for CCNA1 Gene

Unigene Clusters for CCNA1 Gene

Cyclin A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCNA1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1:
SP2:
SP3: - -
SP4: - -
SP5: - - - -

Relevant External Links for CCNA1 Gene

GeneLoc Exon Structure for
CCNA1
ECgene alternative splicing isoforms for
CCNA1

Expression for CCNA1 Gene

mRNA expression in normal human tissues for CCNA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCNA1 Gene

This gene is overexpressed in Testis (15.6) and Whole Blood (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CCNA1 Gene

SOURCE GeneReport for Unigene cluster for CCNA1 Gene Hs.417050

mRNA Expression by UniProt/SwissProt for CCNA1 Gene

P78396-CCNA1_HUMAN
Tissue specificity: Very high levels in testis and very low levels in brain. Also found in myeloid leukemia cell lines
genes like me logo Genes that share expressions with CCNA1: view

Orthologs for CCNA1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCNA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCNA1 35
  • 99.68 (n)
  • 100 (a)
CCNA1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCNA1 35
  • 86.54 (n)
  • 87.17 (a)
CCNA1 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCNA1 35
  • 88.6 (n)
  • 88.84 (a)
CCNA1 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccna1 35
  • 83.37 (n)
  • 84.32 (a)
Ccna1 16
Ccna1 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCNA1 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCNA1 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccna1 35
  • 83.53 (n)
  • 84.56 (a)
chicken
(Gallus gallus)
Aves CCNA1 35
  • 69.89 (n)
  • 68.73 (a)
CCNA1 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCNA1 36
  • 63 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia LOC397885 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ccna1 35
  • 66.75 (n)
  • 65.71 (a)
Str.4034 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2245 35
zebrafish
(Danio rerio)
Actinopterygii ccna1 35
  • 61.03 (n)
  • 61.97 (a)
ccna1 36
  • 57 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CycA 36
  • 30 (a)
OneToMany
CycA 37
  • 41 (a)
worm
(Caenorhabditis elegans)
Secernentea ZK507.6 37
  • 36 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons CYCA3;2 35
  • 53.16 (n)
  • 45.83 (a)
rice
(Oryza sativa)
Liliopsida Os03g0607600 35
  • 51.75 (n)
  • 47.18 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5837 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10122 36
  • 57 (a)
OneToMany
Species with no ortholog for CCNA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCNA1 Gene

ENSEMBL:
Gene Tree for CCNA1 (if available)
TreeFam:
Gene Tree for CCNA1 (if available)

Paralogs for CCNA1 Gene

Paralogs for CCNA1 Gene

Selected SIMAP similar genes for CCNA1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCNA1: view

Variants for CCNA1 Gene

Sequence variations from dbSNP and Humsavar for CCNA1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs947316 -- 36,440,375(-) CCAAA(C/T)ATAGT intron-variant
rs947317 -- 36,437,907(-) GGTAC(C/G)ATCAG intron-variant
rs2282411 -- 36,440,229(-) TTTTA(C/T)GCTCC intron-variant
rs3737313 -- 36,442,130(-) ACTTT(A/G)TATTA intron-variant
rs3814803 -- 36,430,827(-) ATTGC(C/T)GCAAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCNA1 Gene

Variant ID Type Subtype PubMed ID
nsv899993 CNV Gain 21882294

Relevant External Links for CCNA1 Gene

HapMap Linkage Disequilibrium report
CCNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCNA1 Gene

Disorders for CCNA1 Gene

(1) University of Copenhagen DISEASES for CCNA1 Gene

(13) Novoseek inferred disease relationships for CCNA1 Gene

Disease -log(P) Hits PubMed IDs
myeloid leukemia 53 4
leukemia 34.3 14
leukemia promyelocytic acute 27.2 3
testicular cancer 26.5 1
retinoblastoma 25 3

Relevant External Links for CCNA1

Genetic Association Database (GAD)
CCNA1
Human Genome Epidemiology (HuGE) Navigator
CCNA1
genes like me logo Genes that share disorders with CCNA1: view

No data available for UniProtKB/Swiss-Prot for CCNA1 Gene

Publications for CCNA1 Gene

  1. Characterization of a second human cyclin A that is highly expressed in testis and in several leukemic cell lines. (PMID: 9041194) Yang R. … Koeffler H.P. (Cancer Res. 1997) 2 3 4 23
  2. Functions of cyclin A1 in the cell cycle and its interactions with transcription factor E2F-1 and the Rb family of proteins. (PMID: 10022926) Yang R. … Koeffler H.P. (Mol. Cell. Biol. 1999) 3 4 23
  3. Mutations of the cyclin A1 gene are not a common cause of male infertility. (PMID: 19886767) Zhoucun A. … Yang Y. (Syst Biol Reprod Med 2009) 3 23 48
  4. Identification of interaction partners and substrates of the cyclin A1-CDK2 complex. (PMID: 15159402) Diederichs S. … Mueller-Tidow C. (J. Biol. Chem. 2004) 3 4
  5. Regulation of meiosis during mammalian spermatogenesis: the A-type cyclins and their associated cyclin-dependent kinases are differentially expressed in the germ-cell lineage. (PMID: 10068472) Ravnik S.E. … Wolgemuth D.J. (Dev. Biol. 1999) 3 23

Products for CCNA1 Gene

Sources for CCNA1 Gene

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