Aliases for CCNA1 Gene
External Ids for CCNA1 Gene
- HGNC: 1577
- Entrez Gene: 8900
- Ensembl: ENSG00000133101
- OMIM: 604036
- UniProtKB: P78396
Previous GeneCards Identifiers for CCNA1 Gene
- GC13P034993
- GC13P030993
- GC13P035942
- GC13P034804
- GC13P035904
- GC13P037005
- GC13P017817
Summaries for CCNA1 Gene
-
The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. The cyclin encoded by this gene was shown to be expressed in testis and brain, as well as in several leukemic cell lines, and is thought to primarily function in the control of the germline meiotic cell cycle. This cyclin binds both CDK2 and CDC2 kinases, which give two distinct kinase activities, one appearing in S phase, the other in G2, and thus regulate separate functions in cell cycle. This cyclin was found to bind to important cell cycle regulators, such as Rb family proteins, transcription factor E2F-1, and the p21 family proteins. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
GeneCards Summary for CCNA1 Gene
CCNA1 (Cyclin A1) is a Protein Coding gene. Diseases associated with CCNA1 include Myeloid Leukemia and Acute Promyelocytic Leukemia. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6 and Metabolism of proteins. Gene Ontology (GO) annotations related to this gene include protein kinase binding. An important paralog of this gene is CCNA2.
UniProtKB/Swiss-Prot for CCNA1 Gene
-
May be involved in the control of the cell cycle at the G1/S (start) and G2/M (mitosis) transitions. May primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells.
Additional gene information for CCNA1 Gene
- Monarch Initiative
- Search for CCNA1 at DataMed
- Search for CCNA1 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCNA1 Gene
Genomics for CCNA1 Gene
GeneHancer (GH) Regulatory Elements for CCNA1 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH13I036432 | Promoter/Enhancer | 1.8 | EPDnew Ensembl ENCODE | 550.8 | +1.3 | 1271 | 0.6 | KLF17 SIN3A BMI1 RFX5 GLIS2 EGR2 SP3 USF2 ZEB2 SREBF1 | CCNA1 CCDC169 HIST1H2APS6 | |
GH13I036431 | Promoter | 1 | EPDnew | 550.8 | +0.8 | 767 | 0.1 | ZNF777 ZBTB6 KLF17 MAX ZIC2 BCL11B ZNF335 ZFHX2 GLIS2 POLR2A | CCNA1 HIST1H2APS6 | |
GH13I036772 | Enhancer | 0.3 | ENCODE | 10.4 | +342.0 | 342043 | 0.8 | ATF7 | CCNA1 LOC102723490 TCEAL4P1 | |
GH13I036373 | Enhancer | 0.5 | dbSUPER | 4.6 | -56.3 | -56306 | 1.6 | FOXA2 JUND ATF3 HNF4A ZBTB33 FOXA1 YY1 | CCDC169 SPART-AS1 CCNA1 SPART | |
GH13I036074 | Enhancer | 0.5 | FANTOM5 ENCODE | 4 | -356.1 | -356088 | 0.7 | POLR2A | CCNA1 DCLK1 CCDC169 NMTRQ-TTG10-1 |
Regulatory Element Products
Genomic Locations for CCNA1 Gene
- chr13:36,431,030-36,442,882
- (GRCh38/hg38)
- Size:
- 11,853 bases
- Orientation:
- Plus strand
- chr13:37,005,967-37,017,019
- (GRCh37/hg19)
Genomic View for CCNA1 Gene
- Cytogenetic band:
-
- 13q13.3 by Ensembl
- 13q13.3 by Entrez Gene
- 13q13.3 by HGNC


RefSeq DNA sequence for CCNA1 Gene
Proteins for CCNA1 Gene
-
Protein details for CCNA1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P78396-CCNA1_HUMAN
- Recommended name:
- Cyclin-A1
- Protein Accession:
- P78396
- B7Z7E3
- Q5T3V0
- Q5U0G2
- Q8IY91
Protein attributes for CCNA1 Gene
- Size:
- 465 amino acids
- Molecular mass:
- 52358 Da
- Quaternary structure:
-
- Interacts with the CDK2 and the CDC2 protein kinases to form a serine/threonine kinase holoenzyme complex. The cyclin subunit imparts substrate specificity to the complex. Does not bind CDK4 and CDK5 (in vitro). The cyclin A1-CDK2 complex interacts with transcription factor E2F-1 and RB proteins. Found in a complex with CDK2, CABLES1 and CCNE1 (By similarity). Interacts with INCA1 and KLHDC9.
Protein Expression for CCNA1 Gene
Post-translational modifications for CCNA1 Gene
- Polyubiquitinated via Lys-11-linked ubiquitin by the anaphase-promoting complex (APC/C), leading to its degradation by the proteasome. Deubiquitinated and stabilized by USP37 enables entry into S phase.
Other Protein References for CCNA1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
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-
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No data available for DME Specific Peptides for CCNA1 Gene
Domains & Families for CCNA1 Gene
Gene Families for CCNA1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Cancer-related genes
- Predicted intracellular proteins
Protein Domains for CCNA1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for CCNA1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P78396- Family:
-
- Belongs to the cyclin family. Cyclin AB subfamily.
Function for CCNA1 Gene
Molecular function for CCNA1 Gene
- GENATLAS Biochemistry:
- cyclin A1,complexing with CDK2,expressed in meiotic cell in the testis and brain and in several leukemic cell lines,regulator of cell-cycle
- UniProtKB/Swiss-Prot Function:
- May be involved in the control of the cell cycle at the G1/S (start) and G2/M (mitosis) transitions. May primarily function in the control of the germline meiotic cell cycle and additionally in the control of mitotic cell cycle in some somatic cells.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005515 | protein binding | IPI | 8756624 |
Phenotypes for CCNA1 Gene
- MGI mutant phenotypes for CCNA1:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for CCNA1:
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miRNA for CCNA1 Gene
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No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CCNA1 Gene
Localization for CCNA1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CCNA1 Gene
- Nucleus.
- Nuclear bodies (2)
- Nucleoplasm (2)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IEA | -- |
GO:0005654 | nucleoplasm | TAS | -- |
GO:0005829 | cytosol | TAS | 9041194 |
GO:0015630 | microtubule cytoskeleton | IDA | -- |
GO:0097123 | cyclin A1-CDK2 complex | IEA | -- |
Pathways & Interactions for CCNA1 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | CDK-mediated phosphorylation and removal of Cdc6 |
.93
.93
.78
|
|
2 | DNA Double-Strand Break Repair |
.53
|
|
3 | Cell cycle Cell cycle (generic schema) |
.31
.01
|
|
4 | AMP-activated Protein Kinase (AMPK) Signaling | ||
5 | Cellular Senescence (REACTOME) |
Pathways by source for CCNA1 Gene
1 Sino Biological pathway for CCNA1 Gene
1 GeneTex pathway for CCNA1 Gene
5 BioSystems pathways for CCNA1 Gene
55 Reactome pathways for CCNA1 Gene
- Activation of APC/C and APC/C-Cdc20 mediated degradation of mitotic proteins
- APC/C-Cdc20 mediated degradation of mitotic proteins
- APC/C-mediated degradation of cell cycle proteins
- APC-Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
- Cdc20-Phospho-APC/C mediated degradation of Cyclin A
11 KEGG pathways for CCNA1 Gene
9 GeneGo (Thomson Reuters) pathways for CCNA1 Gene
Interacting Proteins for CCNA1 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000083 | regulation of transcription involved in G1/S transition of mitotic cell cycle | TAS | -- |
GO:0007049 | cell cycle | IEA | -- |
GO:0007141 | male meiosis I | TAS | 9843212 |
GO:0007283 | spermatogenesis | TAS | 9843212 |
GO:0016579 | protein deubiquitination | TAS | -- |
Transcripts for CCNA1 Gene
mRNA/cDNA for CCNA1 Gene
- (7) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (68) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
-
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ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | |||||||||||||||||||||||||||||||
SP2: | |||||||||||||||||||||||||||||||
SP3: | - | - | |||||||||||||||||||||||||||||
SP4: | - | - | |||||||||||||||||||||||||||||
SP5: | - | - | - | - |
Expression for CCNA1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Inner Cell Mass (Early Embryonic Tissues)
- Endothelium (Cardiovascular System)
- Testis (Reproductive System)
- Bone (Muscoskeletal System)
mRNA differential expression in normal tissues according to GTEx for CCNA1 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CCNA1 Gene
NURSA nuclear receptor signaling pathways regulating expression of CCNA1 Gene:
CCNA1SOURCE GeneReport for Unigene cluster for CCNA1 Gene:
Hs.417050mRNA Expression by UniProt/SwissProt for CCNA1 Gene:
P78396-CCNA1_HUMANEvidence on tissue expression from TISSUES for CCNA1 Gene
- Nervous system(4.4)
- Blood(4.3)
- Lymph node(4)
- Spleen(4)
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No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CCNA1 Gene
Orthologs for CCNA1 Gene
This gene was present in the common ancestor of eukaryotes.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | CCNA1 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | CCNA1 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | CCNA1 33 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Ccna1 33 |
|
||
mouse (Mus musculus) |
Mammalia | Ccna1 33 16 34 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | CCNA1 34 |
|
OneToOne | |
platypus (Ornithorhynchus anatinus) |
Mammalia | CCNA1 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | CCNA1 33 34 |
|
||
lizard (Anolis carolinensis) |
Reptilia | CCNA1 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | ccna1 33 |
|
||
Str.4034 33 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | LOC397885 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | ccna1 33 34 |
|
||
rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.2245 33 |
|
||
fruit fly (Drosophila melanogaster) |
Insecta | CycA 35 34 |
|
||
worm (Caenorhabditis elegans) |
Secernentea | ZK507.6 35 |
|
|
|
thale cress (Arabidopsis thaliana) |
eudicotyledons | CYCA3;2 33 |
|
||
rice (Oryza sativa) |
Liliopsida | Os03g0607600 33 |
|
||
sea squirt (Ciona savignyi) |
Ascidiacea | CSA.10122 34 |
|
OneToMany | |
sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.5837 33 |
|
- Species where no ortholog for CCNA1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for CCNA1 Gene
Variants for CCNA1 Gene
SNP ID | Clin | Chr 13 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000039439 | -- | 36,436,998(+) | T/A | intron_variant | |
rs1000557771 | -- | 36,436,774(+) | C/T | intron_variant | |
rs1000618259 | -- | 36,433,309(+) | T/C | intron_variant | |
rs1000820410 | -- | 36,431,378(+) | C/T | 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant | |
rs1000968174 | -- | 36,437,265(+) | A/G | intron_variant |
Additional Variant Information for CCNA1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCNA1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCNA1 Gene
Disorders for CCNA1 Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
myeloid leukemia |
|
|
acute promyelocytic leukemia |
|
|
leukemia, acute myeloid |
|
|
Additional Disease Information for CCNA1
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for CCNA1 Gene
Publications for CCNA1 Gene
- Characterization of a second human cyclin A that is highly expressed in testis and in several leukemic cell lines. (PMID: 9041194) Yang R … Koeffler HP (Cancer research 1997) 2 3 4 22 58
- Mutations of the cyclin A1 gene are not a common cause of male infertility. (PMID: 19886767) Zhoucun A … Yang Y (Systems biology in reproductive medicine 2009) 3 22 44 58
- Functions of cyclin A1 in the cell cycle and its interactions with transcription factor E2F-1 and the Rb family of proteins. (PMID: 10022926) Yang R … Koeffler HP (Molecular and cellular biology 1999) 3 4 22 58
- KDM8, a H3K36me2 histone demethylase that acts in the cyclin A1 coding region to regulate cancer cell proliferation. (PMID: 20457893) Hsia DA … Izumiya Y (Proceedings of the National Academy of Sciences of the United States of America 2010) 3 22 58
- Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis. (PMID: 19738611) Cunningham JM … Goode EL (British journal of cancer 2009) 3 44 58
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- Overview of 131 available Cyclin A1 gene related products
- Recommended
- genomics-online: primer clones - Search results for 131 available Cyclin A1 gene related products
- Overview of 131 available Cyclin A1 gene related products
- Recommended
- genomics-online: shRNA clones - Search results for 131 available Cyclin A1 gene related products
- Overview of 131 available Cyclin A1 gene related products
- Recommended
Sources for CCNA1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew