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Aliases for CCL4L1 Gene

Aliases for CCL4L1 Gene

  • C-C Motif Chemokine Ligand 4 Like 1 2 3
  • Monocyte Adherence-Induced Protein 5-Alpha 3 4
  • Macrophage Inflammatory Protein 1-Beta 3 4
  • Lymphocyte Activation Gene 1 Protein 3 4
  • Small Inducible Cytokine A4-Like 2 3
  • Small-Inducible Cytokine A4-Like 3 4
  • MIP-1-Beta 3 4
  • SCYA4L1 3 4
  • SCYA4L2 3 4
  • LAG-1 3 4
  • CCL4L 3 4
  • LAG1 3 4
  • Chemokine (C-C Motif) Ligand 4-Like 1, Telomeric 3
  • Chemokine (C-C Motif) Ligand 4-Like 1 2
  • Chemokine (C-C Motif) Ligand 4-Like 2
  • Macrophage Inflammatory Protein-1b2 3
  • C-C Motif Chemokine 4-Like 3
  • CC Chemokine Ligand 4L1 3
  • CCL4L1 CCL4L2 4
  • AT744.2 3
  • SCYA4L 3

External Ids for CCL4L1 Gene

Previous HGNC Symbols for CCL4L1 Gene

  • SCYA4L
  • CCL4L

Previous GeneCards Identifiers for CCL4L1 Gene

  • GC17P034785
  • GC17P031664
  • GC17P031564
  • GC17P034538
  • GC17P030726
  • GC17P036210

Summaries for CCL4L1 Gene

Entrez Gene Summary for CCL4L1 Gene

  • This gene is one of several cytokine genes that are clustered on the q-arm of chromosome 17. Cytokines are a family of secreted proteins that function in inflammatory and immunoregulatory processes. The protein encoded by this family member is similar to the chemokine (C-C motif) ligand 4 product, which inhibits HIV entry by binding to the cellular receptor CCR5. The copy number of this gene varies among individuals, where most individuals have one to five copies. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Apr 2014]

GeneCards Summary for CCL4L1 Gene

CCL4L1 (C-C Motif Chemokine Ligand 4 Like 1) is a Protein Coding gene. Diseases associated with CCL4L1 include Omsk Hemorrhagic Fever and Japanese Spotted Fever. Among its related pathways are PEDF Induced Signaling and PAK Pathway. GO annotations related to this gene include chemokine activity.

UniProtKB/Swiss-Prot for CCL4L1 Gene

  • Chemokine that induces chemotaxis of cells expressing CCR5 or CCR1. Inhibits HIV replication in peripheral blood monocytes that express CCR5.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCL4L1 Gene

Genomics for CCL4L1 Gene

Regulatory Elements for CCL4L1 Gene


Genomic Location for CCL4L1 Gene

Chromosome:
17
Start:
266,611 bp from pter
End:
268,581 bp from pter
Size:
1,971 bases
Orientation:
Plus strand

Genomic View for CCL4L1 Gene

Genes around CCL4L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for CCL4L1 Gene

Proteins for CCL4L1 Gene

  • Protein details for CCL4L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHW4-CC4L_HUMAN
    Recommended name:
    C-C motif chemokine 4-like
    Protein Accession:
    Q8NHW4
    Secondary Accessions:
    • B2RUZ3
    • B7ZMA8
    • Q50EM1
    • Q50EM2
    • Q50EM3
    • Q50EM4
    • Q50EM5
    • Q50EM6
    • Q50EM7
    • Q50EM8
    • Q569J2
    • Q6NSB0

    Protein attributes for CCL4L1 Gene

    Size:
    92 amino acids
    Molecular mass:
    10166 Da
    Quaternary structure:
    • Interacts with CCR5.
    • Interacts with CCR5.

    Alternative splice isoforms for CCL4L1 Gene

neXtProt entry for CCL4L1 Gene

Post-translational modifications for CCL4L1 Gene

No Post-translational modifications

Other Protein References for CCL4L1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CCL4L1 Gene

Domains & Families for CCL4L1 Gene

Gene Families for CCL4L1 Gene

Protein Domains for CCL4L1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NHW4

UniProtKB/Swiss-Prot:

CC4L_HUMAN :
  • Belongs to the intercrine beta (chemokine CC) family.
Family:
  • Belongs to the intercrine beta (chemokine CC) family.
genes like me logo Genes that share domains with CCL4L1: view

No data available for Suggested Antigen Peptide Sequences for CCL4L1 Gene

Function for CCL4L1 Gene

Molecular function for CCL4L1 Gene

UniProtKB/Swiss-Prot Function:
Chemokine that induces chemotaxis of cells expressing CCR5 or CCR1. Inhibits HIV replication in peripheral blood monocytes that express CCR5.

Gene Ontology (GO) - Molecular Function for CCL4L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008009 chemokine activity IBA --
GO:0048020 CCR chemokine receptor binding IBA --
genes like me logo Genes that share ontologies with CCL4L1: view

Phenotypes for CCL4L1 Gene

genes like me logo Genes that share phenotypes with CCL4L1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCL4L1 Gene

Localization for CCL4L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCL4L1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCL4L1 gene
Compartment Confidence
extracellular 4
plasma membrane 2
cytosol 2
cytoskeleton 1
nucleus 1

Gene Ontology (GO) - Cellular Components for CCL4L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with CCL4L1: view

Pathways & Interactions for CCL4L1 Gene

genes like me logo Genes that share pathways with CCL4L1: view

Interacting Proteins for CCL4L1 Gene

Gene Ontology (GO) - Biological Process for CCL4L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002548 monocyte chemotaxis IBA --
GO:0006954 inflammatory response IBA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0030593 neutrophil chemotaxis IBA --
GO:0043547 positive regulation of GTPase activity IBA --
genes like me logo Genes that share ontologies with CCL4L1: view

No data available for SIGNOR curated interactions for CCL4L1 Gene

Drugs & Compounds for CCL4L1 Gene

No Compound Related Data Available

Transcripts for CCL4L1 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCL4L1 Gene

No ASD Table

Relevant External Links for CCL4L1 Gene

GeneLoc Exon Structure for
CCL4L1
ECgene alternative splicing isoforms for
CCL4L1

Expression for CCL4L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCL4L1 Gene

mRNA differential expression in normal tissues according to GTEx for CCL4L1 Gene

This gene is overexpressed in Whole Blood (x15.6) and Spleen (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of CCL4L1 Gene:

CCL4L1

mRNA Expression by UniProt/SwissProt for CCL4L1 Gene:

Q8NHW4-CC4L_HUMAN
Tissue specificity: Detected in B-cells.

Evidence on tissue expression from TISSUES for CCL4L1 Gene

  • Blood(4.8)
  • Nervous system(4.4)
  • Lymph node(2.7)
  • Bone marrow(2.6)
  • Spleen(2.5)
  • Lung(2.3)
  • Liver(2.1)
  • Intestine(2)
genes like me logo Genes that share expression patterns with CCL4L1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCL4L1 Gene

Orthologs for CCL4L1 Gene

No data available for Orthologs and Evolution for CCL4L1 Gene

Paralogs for CCL4L1 Gene

genes like me logo Genes that share paralogs with CCL4L1: view

No data available for Paralogs for CCL4L1 Gene

Variants for CCL4L1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for CCL4L1 Gene

CC4L_HUMAN-Q8NHW4
The copy number of the CC4L1 gene varies among individuals; most individuals have 1 to 6 copies in the diploid genome.

Sequence variations from dbSNP and Humsavar for CCL4L1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs36074765 -- 36,213,156(+) TGCTT(-/G)GGGAG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CCL4L1 Gene

Variant ID Type Subtype PubMed ID
dgv120e55 CNV gain 17911159
dgv121e55 CNV gain 17911159
dgv178n21 CNV loss 19592680
dgv3143n100 CNV gain 25217958
dgv3144n100 CNV gain 25217958
dgv3145n100 CNV gain 25217958
dgv3146n100 CNV gain 25217958
dgv3147n100 CNV gain 25217958
dgv522n67 CNV gain 20364138
dgv523n67 CNV gain 20364138
dgv545e199 CNV deletion 23128226
dgv5534n54 CNV gain 21841781
dgv5535n54 CNV gain 21841781
dgv5538n54 CNV gain 21841781
dgv5540n54 CNV loss 21841781
dgv5541n54 CNV loss 21841781
dgv5544n54 CNV loss 21841781
dgv5545n54 CNV gain 21841781
dgv5546n54 CNV loss 21841781
dgv5547n54 CNV loss 21841781
dgv5548n54 CNV loss 21841781
dgv908e212 CNV gain 25503493
esv2664544 CNV deletion 23128226
esv2670934 CNV deletion 23128226
esv2715876 CNV deletion 23290073
esv2760467 CNV gain 21179565
esv2762388 CNV gain+loss 21179565
esv33107 CNV loss 17666407
esv3345949 CNV duplication 20981092
esv3441237 CNV duplication 20981092
esv3450833 CNV duplication 20981092
esv3554365 CNV deletion 23714750
esv3893000 CNV gain+loss 25118596
esv3893001 CNV gain 25118596
esv3893002 CNV loss 25118596
esv3893005 CNV loss 25118596
nsv1059497 CNV gain+loss 25217958
nsv1059795 CNV gain 25217958
nsv1061066 CNV loss 25217958
nsv1061448 CNV gain+loss 25217958
nsv1062304 CNV loss 25217958
nsv1072731 CNV deletion 25765185
nsv1133405 CNV deletion 24896259
nsv1143852 CNV deletion 24896259
nsv1160468 CNV duplication 26073780
nsv2040 CNV deletion 18451855
nsv433448 CNV gain 18776910
nsv457733 CNV gain 19166990
nsv471396 CNV gain 19718026
nsv514836 CNV gain 21397061
nsv514838 CNV gain 21397061
nsv517262 CNV gain+loss 19592680
nsv574755 CNV gain 21841781
nsv574780 CNV gain+loss 21841781
nsv574781 CNV gain 21841781
nsv574783 CNV gain 21841781
nsv574788 CNV gain+loss 21841781
nsv820772 CNV deletion 20802225
nsv833427 CNV loss 17160897
nsv953882 CNV deletion 24416366
nsv960470 CNV duplication 23825009
nsv960473 CNV duplication 23825009

Variation tolerance for CCL4L1 Gene

Gene Damage Index Score: 5.98; 74.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCL4L1 Gene

Human Gene Mutation Database (HGMD)
CCL4L1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCL4L1

Disorders for CCL4L1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for CCL4L1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
omsk hemorrhagic fever
  • hemorrhagic fever, omsk
japanese spotted fever
  • oriental spotted fever
chronic nk-cell lymphocytosis
  • nk-cell large granular lymphocyte lymphocytosis
human immunodeficiency virus infectious disease
  • hiv infection
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CCL4L1

Genetic Association Database (GAD)
CCL4L1
Human Genome Epidemiology (HuGE) Navigator
CCL4L1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCL4L1
genes like me logo Genes that share disorders with CCL4L1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCL4L1 Gene

Publications for CCL4L1 Gene

  1. CCL3L1 and CCL4L1: variable gene copy number in adolescents with and without human immunodeficiency virus type 1 (HIV-1) infection. (PMID: 17330138) Shao W. … Kaslow R.A. (Genes Immun. 2007) 3 4 46 64
  2. CCL3L1 and CCL4L1 chemokine genes are located in a segmental duplication at chromosome 17q12. (PMID: 15028295) Modi W.S. (Genomics 2004) 2 3 4 64
  3. Combinatorial content of CCL3L and CCL4L gene copy numbers influence HIV-AIDS susceptibility in Ukrainian children. (PMID: 19279442) Shostakovich-Koretskaya L. … Ahuja S.K. (AIDS 2009) 22 46 64
  4. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D. … Ferrucci L. (PLoS Genet. 2008) 3 46 64
  5. Multiple products derived from two CCL4 loci: high incidence of a new polymorphism in HIV+ patients. (PMID: 15843566) Colobran R. … Juan M. (J. Immunol. 2005) 3 4 64

Products for CCL4L1 Gene

Sources for CCL4L1 Gene

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