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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CCL4 Gene

protein-coding GIFtS: 63
GCID: GC17P034431

Chemokine (C-C Motif) Ligand 4

(Previous name: small inducible cytokine A4 (homologous to mouse Mip-1b))
(Previous symbols: LAG1, SCYA4)

Microbiology & Infectious Diseases Congress

131 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Chemokine (C-C Motif) Ligand 4¹ ²		PAT 744² ³
SCYA4¹ ² ³ ⁵		T-Cell Activation Protein 2² ³
LAG1¹ ² ³		ACT2² ⁵
MIP1B² ³ ⁵		AT744.1² ⁵
Small Inducible Cytokine A4 (Homologous To Mouse Mip-1b)¹ ²		G-26²
Lymphocyte Activation Gene 1 Protein² ³		MIP1B1²
Macrophage Inflammatory Protein 1-Beta² ³		SCYA2²
HC21² ³		C-C Motif Chemokine 4²
LAG-1² ³		Secreted Protein G-26²
MIP-1-beta² ³		ACT-2³
MIP-1-beta(1-69)² ³		Protein H400³
SIS-gamma² ³		Small-Inducible Cytokine A4³
G-26 T-Lymphocyte-Secreted Protein² ³

External Ids:	HGNC: 10630¹	Entrez Gene: 6351²	Ensembl: ENSG00000129277⁷	OMIM: 182284⁵	UniProtKB: P13236³

Export aliases for CCL4 gene to outside databases

Previous GC identifers: GC17P034201 GC17P036466 GC17P034279 GC17P034576 GC17P031421 GC17P030617

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CCL4 Gene:

The protein encoded by this gene is a mitogen-inducible monokine and is one of the major HIV-suppressive factors

produced by CD8+ T-cells. The encoded protein is secreted and has chemokinetic and inflammatory functions. (provided

by RefSeq, Dec 2012)

GeneCards Summary for CCL4 Gene:

CCL4 (chemokine (C-C motif) ligand 4) is a protein-coding gene. Diseases associated with CCL4 include idiopathic steroid-sensitive nephrotic syndrome, and stachybotrys chartarum, and among its related super-pathways are MIF Mediated Glucocorticoid Regulation and Toll-like receptor signaling pathway. GO annotations related to this gene include CCR1 chemokine receptor binding and cytokine activity. An important paralog of this gene is CCL15.

UniProtKB/Swiss-Prot: CCL4_HUMAN, P13236

Function: Monokine with inflammatory and chemokinetic properties. Binds to CCR5. One of the major HIV-suppressive

factors produced by CD8+ T-cells. Recombinant MIP-1-beta induces a dose-dependent inhibition of different strains of

HIV-1, HIV-2, and simian immunodeficiency virus (SIV). The processed form MIP-1-beta(3-69) retains the abilities to

induce down-modulation of surface expression of the chemokine receptor CCR5 and to inhibit the CCR5-mediated entry of

HIV-1 in T-cells. MIP-1-beta(3-69) is also a ligand for CCR1 and CCR2 isoform B

Gene Wiki entry for CCL4 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000017.10 NC_018928.2 NT_010799.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CCL4 gene promoter:
CREB AML1a deltaCREB STAT3
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CCL4 promoter sequence

Search SABiosciences Chromatin IP Primers for CCL4

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCL4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q21-q23

CCL4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCL4 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17P034431: view genomic region (about GC identifiers)

Start:	34,430,983 bp from pter	End:	34,433,014 bp from pter
Size:	2,032 bases	Orientation:	plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCL4_HUMAN, P13236 (See protein sequence)

Recommended Name: C-C motif chemokine 4 precursor

Size: 92 amino acids; 10212 Da

Subunit: Homodimer and heterodimer of MIP-1-alpha(4-69) and MIP-1-beta(3-69)

Subcellular location: Secreted

Caution: Was originally (PubMed:9521068) thought to be a ligand for CCR8

7 PDB 3D structures from and Proteopedia for CCL4 (see first 6):

1HUM (3D)

1HUN (3D)

1JE4 (3D)

2FFK (3D)

2FIN (3D)

2X6L (3D)

3TN2 (3D)

Secondary accessions: P22617 Q13704 Q3SXL8 Q6FGI8

Explore the universe of human proteins at neXtProt for CCL4: NX_P13236

Explore proteomics data for CCL4 at MOPED

Post-translational modifications:

UniProtKB: N-terminal processed form MIP-1-beta(3-69) is produced by proteolytic cleavage after secretion from peripheral blood

lymphocytes

View neXtProt modification sites for NX_P13236

CCL4 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins: NP_002975.1

ENSEMBL proteins:

ENSP00000250151 ENSP00000378004

Reactome Protein details: P13236
Human Recombinant Protein Products for CCL4:

	Browse Purified and Recombinant Proteins at EMD Millipore
	R&D Systems Recombinant & Natural Proteins for CCL4 (CCL4/MIP-1 beta)
	Browse recombinant and purified proteins available from Enzo Life Sciences
	OriGene Purified Protein for CCL4 OriGene Protein Over-expression Lysate for CCL4 OriGene MassSpec for CCL4 OriGene Custom Protein Services for CCL4
	GenScript Purified and Recombinant Proteins for CCL4
	Novus Biologicals CCL4 Proteins Novus Biologicals CCL4 Lysates
	Browse Sino Biological Recombinant Proteins Browse Sino Biological Cell Lysates
	ProSpec Recombinant Protein for CCL4
	Browse Proteins at Cloud-Clone Corp.

Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	TAS	--
GO:0005615	extracellular space	IEA	--

CCL4 for ontologies About GeneDecksing

CCL4 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of CCL4
	R&D Systems Antibodies for CCL4 (CCL4/MIP-1 beta)
	OriGene Antibodies for CCL4 OriGene Custom Antibody Services for CCL4
	GenScript Custom Superior Antibodies Services for CCL4
	Novus Biologicals CCL4 Antibodies
	Abcam antibodies for CCL4
	Browse Antibodies at Cloud-Clone Corp.
	ThermoFisher Antibodies for CCL4
	LSBio Antibodies in human, mouse, rat for CCL4

Assay Products for CCL4:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Assay Services for CCL4
	R&D Systems Flow Cytometry Kits for CCL4 (CCL4/MIP-1 beta) (see all)
	GenScript Custom Assay Services for CCL4
	Browse Enzo Life Sciences for kits & assays
	Browse ELISAs at Cloud-Clone Corp. Browse CLIAs at Cloud-Clone Corp.

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

ENDOLIG: Endogenous ligands

CCL: Chemokine ligands

2 InterPro protein domains:

IPR000827 Chemokine_CC_CS

IPR001811 Chemokine_IL8-like_dom

Graphical View of Domain Structure for InterPro Entry P13236

ProtoNet protein and cluster: P13236

1 Blocks protein domain: IPB000827 Small chemokine

UniProtKB/Swiss-Prot: CCL4_HUMAN, P13236

Similarity: Belongs to the intercrine beta (chemokine CC) family

CCL4 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: CCL4_HUMAN, P13236

Function: Monokine with inflammatory and chemokinetic properties. Binds to CCR5. One of the major HIV-suppressive

factors produced by CD8+ T-cells. Recombinant MIP-1-beta induces a dose-dependent inhibition of different strains of

HIV-1, HIV-2, and simian immunodeficiency virus (SIV). The processed form MIP-1-beta(3-69) retains the abilities to

induce down-modulation of surface expression of the chemokine receptor CCR5 and to inhibit the CCR5-mediated entry of

HIV-1 in T-cells. MIP-1-beta(3-69) is also a ligand for CCR1 and CCR2 isoform B

Induction: By mitogens

Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005125	cytokine activity	TAS	2462251
GO:0005515	protein binding	IPI	--
GO:0008009	chemokine activity	IEA	--
GO:0031726	CCR1 chemokine receptor binding	IPI	7545673
GO:0031730	CCR5 chemokine receptor binding	IPI	10679098

CCL4 for ontologies About GeneDecksing

Animal Models:

inGenious Targeting Laboratory - Custom generated mouse model solutions for CCL4

inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCL4

miRNA Products:		miRTarBase miRNAs that target CCL4: hsa-mir-195 (MIRT004669)


		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCL4
		3 QIAGEN miScript miRNA Assays for microRNAs that regulate CCL4:
		hsa-miR-125a-3p hsa-miR-3919 hsa-miR-570
		SwitchGear 3'UTR luciferase reporter plasmid: CCL4 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene RNAi products in human, mouse, rat for CCL4
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCL4
		Sirion Biotech Custom design and validation of potent shRNA sequences against CCL4

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for CCL4
			Sirion Biotech Customized adenovirus for overexpression of CCL4 Customized adenovirus for potent knockdown of CCL4

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene clones in human, mouse for CCL4 (see all 7) OriGene ORF clones in mouse, rat for CCL4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CCL4 (NM_002984)
		Sino Biological Human cDNA Clone for CCL4
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCL4
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCL4

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CCL4
		Search LifeMap BioReagents cell lines for CCL4
		Sirion Biotech Customized stable knockdown cell line services for CCL4 Customized inducible knockdown cell line services for CCL4 Customized stable overexpressing cell line services for CCL4 Customized inducible overexpressing cell line services for CCL4

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCL4

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for CCL4 About (see all 18)

See pathways by source

SuperPath

Selected contained pathways About (see all per SuperPath)

PEDF Induced Signaling

MIF Mediated Glucocorticoid Regulation	0.94	NFAT Signaling and Lymphocyte Interactions	0.57
MIF Regulation of Innate Immune Cells	0.94	PGC1Alpha Pathway	0.51
PEDF Induced Signaling	0.73	STAT3 Pathway	0.47
all-trans-Retinoic Acid Signaling in Brain	0.71	Endothelin-1 Signaling Pathway	0.46

Toll-like receptor signaling pathway

Toll-like receptor signaling pathway

0.93

Toll-like receptor signaling pathway

0.93

Chemokine Signaling

Chemokine Signaling

0.33

Chemokine signaling pathway

0.33

TGF-Beta Pathway

TGF-Beta Pathway	0.60	JNK Pathway	0.51
MAPK Family Pathway	0.60	Regulation of eIF4 and p70S6K	0.43
JAK-STAT Pathway	0.57	SOCS Pathway	0.40

Class A/1 (Rhodopsin-like receptors)

	Class A/1 (Rhodopsin-like receptors)	0.71			Peptide ligand-binding receptors	0.60
	GPCR ligand binding	0.71

Pathways by source See SuperPaths
Show all pathways

1 EMD Millipore Pathway for CCL4

Apoptosis and survival APRIL and BAFF signaling

1 R&D Systems Pathway for CCL4

IL-15 Signaling and its Primary Biological Effects in Different Immune Cell Types

5/28 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CCL4 (see all 28)

	Endothelin-1 Signaling Pathway
	Molecular Mechanisms of Cancer
	Antioxidant Action of Vitamin-C
	NFAT Signaling and Lymphocyte Interactions
	JNK Pathway

1 GeneGo (Thomson Reuters) Pathway for CCL4

Apoptosis and survival APRIL and BAFF signaling

2 BioSystems Pathways for CCL4

	Toll-like receptor signaling pathway
	IL12-mediated signaling events

5/6 Reactome Pathways for CCL4 (see all 6)

	Peptide ligand-binding receptors
	Chemokine receptors bind chemokines
	Signal Transduction
	Signaling by GPCR
	GPCR ligand binding

5/6 Kegg Pathways (Kegg details for CCL4) (see all 6):

	Cytokine-cytokine receptor interaction
	Chemokine signaling pathway
	NF-kappa B signaling pathway
	Toll-like receptor signaling pathway
	Cytosolic DNA-sensing pathway

CCL4 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for CCL4

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/29 Interacting proteins for CCL4 (P13236^{2, 3} ENSP00000250151⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 29)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
IDE	P14735²^,³, ENSP00000265986⁴	MINT-8087616 I2D: score=1 STRING: ENSP00000265986
CCR1	P32246³, ENSP00000296140⁴	I2D: score=5 STRING: ENSP00000296140
ACKR2	O00590³, ENSP00000273145⁴	I2D: score=4 STRING: ENSP00000273145
CCL3	P10147³, ENSP00000225245⁴	I2D: score=3 STRING: ENSP00000225245
CCR5	P51681³, ENSP00000292303⁴	I2D: score=3 STRING: ENSP00000292303

About this table

Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006928	cellular component movement	TAS	9759849
GO:0006935	chemotaxis	IEA	--
GO:0006954	inflammatory response	IEA	--
GO:0006955	immune response	IEA	--
GO:0007155	cell adhesion	TAS	10929056

CCL4 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

CCL4 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CCL4

10/67 Novoseek inferred chemical compound relationships for CCL4 gene (see all 67) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
rantes	97	722	10888363 (7), 11861332 (6), 9746565 (6), 16924394 (5) (see all 99)
ccl3	90.8	130	12960284 (3), 15585374 (3), 16773571 (3), 19074730 (3) (see all 74)
ccl4	84.6	232	14761932 (7), 15240137 (6), 15843566 (4), 14673550 (4) (see all 99)
mip 1alpha	84.3	23	16518599 (5), 18403790 (4), 11097208 (2), 9343222 (1) (see all 12)
groalpha	78.1	15	10437780 (2), 16542377 (2), 10419917 (1), 17228323 (1) (see all 13)
tarc	76.6	17	10540332 (3), 9521068 (2), 15941911 (1), 9153236 (1) (see all 12)
grogamma	71	3	10467937 (2), 11808935 (1)
larc	68.8	9	18492658 (3), 9153236 (1), 9169480 (1), 10449163 (1) (see all 7)
mcp 1	59.6	5	10559777 (2), 15660413 (1), 17993576 (1), 11683586 (1)
mdms	58.3	7	16857988 (1), 9870313 (1), 10082122 (1), 11839143 (1)

Search CenterWatch for drugs/clinical trials and news about CCL4

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CCL4 gene:

NM_002984.2

Unigene Cluster for CCL4:

Chemokine (C-C motif) ligand 4

Hs.75703 [show with all ESTs]

Unigene Representative Sequence: CD521853

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000250151(uc002hkw.1) ENST00000394495(uc002hkx.1) ENST00000591883

Congresses - knowledge worth sharing:
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

miRNA Products:
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCL4
		3 QIAGEN miScript miRNA Assays for microRNAs that regulate CCL4:
		hsa-miR-125a-3p hsa-miR-3919 hsa-miR-570
		SwitchGear 3'UTR luciferase reporter plasmid: CCL4 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene RNAi products in human, mouse, rat for CCL4
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCL4
		Sirion Biotech Custom design and validation of potent shRNA sequences against CCL4

Clone Products:		OriGene clones in human, mouse for CCL4 (see all 7) OriGene ORF clones in mouse, rat for CCL4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CCL4 (NM_002984)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCL4
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCL4

Primer Products:		OriGene qPCR primer pairs and template standards for CCL4 OriGene qSTAR qPCR primer pairs in human, mouse for CCL4
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat CCL4
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCL4
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCL4

Additional mRNA sequence:

AY312578.1 AY766446.1 AY766448.1 BC104226.1 BC104227.1 BC107433.1 CR542119.1 J04130.1

M23502.1 M25316.1 M57503.1 X16166.1 X53683.1

12 DOTS entries:

DT.100044914 DT.100044255 DT.97766642 DT.100890234 DT.86854556 DT.100890235 DT.100762795 DT.120948312

DT.95267994 DT.95267995 DT.120948253 DT.453194

24/177 AceView cDNA sequences (see all 177):

BE326709 CR610625 AI343539 T29074 AI341064 AI862912 AA362350 AA362287

AI359523 AA362359 CD522904 CD638483 X16166 CD639251 AA362119 CD520656

N29753 BI834273 BM543715 BE670804 BV203910 AA362271 AY312578 BQ007461

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CCL4 expression in normal human tissues (normalized intensities) CCL4 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: GATAACACAT

About this image

CCL4 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/5 selected tissues (see all 5) fully expand


Blood (Cardiovascular System) fully expand to see all 5 entries
clps

Bone (Muscoskeletal System) fully expand to see all 2 entries
Bone marrow-derived mesenchymal stem cells

Reproductive System (Reproductive System)
Secondary follicles

Ovary (Reproductive System)
Secondary follicles

Kidney (Urinary System)

See CCL4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCL4

SOURCE GeneReport for Unigene cluster: Hs.75703

SABiosciences Expression via Pathway-Focused PCR Arrays including CCL4 (see all 14):

HIV Host Response in human mouse rat

G-Protein-Coupled Receptor Signaling PathwayFinder in human mouse rat

Antiviral Response in human mouse rat

Inflammatory Response & Autoimmunity in human mouse rat

T-cell & B-cell Activation in human mouse rat

Primer Products:		OriGene qPCR primer pairs and template standards for CCL4 OriGene qSTAR qPCR primer pairs in human, mouse for CCL4
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat CCL4
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCL4
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCL4

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCL4

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for CCL4 gene from 1/6 species (see all 6) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Ccl4^{1 , 5}	chemokine (C-C motif) ligand 4^{1, 5}	81.88(n)¹ 76.09(a)¹		11 (51.09 cM)⁵ 20303¹ NM_013652.2¹ NP_038680.1¹ 83662584⁵

ENSEMBL Gene Tree for CCL4 (if available)
TreeFam Gene Tree for CCL4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for CCL4 gene

CCL15² CCL16² CCL14² CCL4L1² CCL3L1² CCL4L2² CCL26² CCL3²

CCL5² CCL23² CCL3L3² CCL18² CCL15-CCL14²

18/28 SIMAP similar genes for CCL4 using alignment to 3 protein entries: CCL4_HUMAN (see all proteins) (see all similar genes):

CCL4L2 LOC728835 CCL4L1 CCL3L1 CCL3 CCL14

CCL5 CCL3L3 CCL11 CCL18 CCL7 MCP-3

CCL2 CCL16 CCL26 CCL8 CCL13 CCL22

CCL4 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
VAR_059211⁴	--	--	see VAR_059211	2	S T	mis⁴		0	--	--	--	--
VAR_048702⁴	--	--	see VAR_048702	2	M V	mis⁴		0	--	--	--	--
VAR_048703⁴	--	--	see VAR_048703	2	P L	mis⁴		0	--	--	--	--

HapMap Linkage Disequilibrium report for CCL4 (34430983 - 34433014 bp)

Structural Variations
Database of Genomic Variants (DGV) 10/29 variations for CCL4 (see all 29): About this table

Variant ID	Type	Subtype	PubMed ID
esv2664544	CNV	Deletion	23128226
esv2715876	CNV	Deletion	23290073
esv2670934	CNV	Deletion	23128226
nsv471396	CNV	Duplication	19718026
nsv833427	CNV	Loss	17160897
esv33107	CNV	Loss	17666407
dgv178n21	CNV	Loss	19592680
dgv122e55	CNV	Gain	17911159
dgv522n67	CNV	Gain	20364138
dgv3144n71	CNV	Gain	21882294

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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CCL4 for disorders           About GeneDecksing

OMIM gene information: 182284    OMIM disorders: --

20/131 diseases for CCL4 (see all 131):    About MalaCards

idiopathic steroid-sensitive nephrotic syndrome stachybotrys chartarum retinal vasculitis erdheim-chester disease

lyme disease multicentric castleman disease idiopathic pulmonary alveolar proteinosis meconium aspiration syndrome

alexithymia relapsing polychondritis toxic shock syndrome crescentic glomerulonephritis

periapical granuloma castleman's disease measles eosinophilic pneumonia

tuberculosis cerebral malaria pulmonary alveolar proteinosis neuritis

1 disease from the University of Copenhagen DISEASES database for CCL4:

Human immunodeficiency virus infectious disease

Congresses - knowledge worth sharing:
The International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD) 9 - 13 March 2014
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015

10/74 Novoseek inferred disease relationships for CCL4 gene (see all 74) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
necrosis	67.3	152	14726627 (2), 14586377 (2), 18622277 (2), 10496934 (2) (see all 99)
immunodeficiency	66.9	34	10979927 (2), 9343222 (1), 9359702 (1), 12427015 (1) (see all 29)
inflammation	63.1	15	9841832 (2), 11097208 (1), 12548712 (1), 14761932 (1) (see all 13)
hiv infections	61.4	17	9732062 (2), 9649315 (1), 10461827 (1), 11120614 (1) (see all 14)
virus infection	43.2	8	10501489 (1), 19155475 (1), 17547763 (1), 19846870 (1) (see all 8)
tumors	43.2	132	15126779 (5), 14586377 (2), 18622277 (2), 12473593 (2) (see all 99)
periapical granuloma	39.6	2	11683586 (2)
aids	37.6	17	9466518 (3), 9420304 (2), 10618285 (1), 16773571 (1) (see all 10)
fibrosis idiopathic pulmonary	32.6	5	11031344 (1), 10384061 (1), 19046553 (1)
viremia	27.5	1	18234797 (1)

Genetic Association Database (GAD): CCL4
Human Genome Epidemiology (HuGE) Navigator: CCL4 (17 documents)

Export disorders for CCL4 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for CCL4 gene, integrated from 9 sources (see all 947):
(articles sorted by number of sources associating them with CCL4)

Utopia: connect your pdf to the dynamic
world of online information

CCL3L1 and CCL4L1: variable gene copy number in adolescents with and without human immunodeficiency virus type 1 (HIV-1) infection. (PubMed id 17330138)^{1, 4, 9} Shao W....Kaslow R.A. (2007)
Multiple products derived from two CCL4 loci: high incidence of a new polymorphism in HIV+ patients. (PubMed id 15843566)^{1, 2, 9} Colobran R.... Juan M. (2005)
Macrophage inflammatory protein-1. (PubMed id 12401480)^{1, 2, 9} Menten P.... Van Damme J. (2002)
Identification of the CC chemokines TARC and macrophage inflammatory protein-1 beta as novel functional ligands for the CCR8 receptor. (PubMed id 9521068)^{1, 2, 9} Bernardini G....Napolitano M. (1998)
The assignment of chemokine-chemokine receptor pairs: TARC and MIP-1 beta are not ligands for human CC-chemokine receptor 8. (PubMed id 10540332)^{1, 2, 9} Garlisi C.G....Umland S.P. (1999)
Polymorphisms in innate immunity genes and patients r esponse to dendritic cell-based HIV immuno-treatment. (PubMed id 20056178)^{1, 4} Segat L....Crovella S. (2010)
Interleukin-9 polymorphism in infants with respirator y syncytial virus infection: an opposite effect in boys and girls. (PubMed id 20503287)^{1, 4} Schuurhof A....Janssen R. (2010)
Genetic susceptibility to respiratory syncytial virus bronchiolitis in preterm children is associated with airway remodeling genes and innate immune genes. (PubMed id 19258923)^{1, 4} Siezen C.L....Janssen R. (2009)
Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes. (PubMed id 17703412)^{1, 4} Janssen R....Hoebee B. (2007)
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)^{1, 2} Zody M.C.... Nusbaum C. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 6351	HGNC: 10630	AceView: CCL4	Ensembl:ENSG00000129277	euGenes: HUgn6351
ECgene: CCL4	Kegg: 6351	H-InvDB: CCL4

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for CCL4	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CCL4	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/Macrophage_Inflammatory_Protein

Intellectual Property for CCL4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CCL4 gene:
Search GeneIP for patents involving CCL4

GeneCards and IP:
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CCL4 Gene

Chemokine (C-C Motif) Ligand 4

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CCL4 (Gene Symbol)
Chemokine (C-C Motif) Ligand 4
SCYA4
LAG1
MIP1B
Small Inducible Cytokine A4 (Homologous To Mouse Mip-1b)
Lymphocyte Activation Gene 1 Protein
Macrophage Inflammatory Protein 1-Beta
HC21
LAG-1
MIP-1-beta
MIP-1-beta(1-69)
SIS-gamma
G-26 T-Lymphocyte-Secreted Protein
PAT 744
T-Cell Activation Protein 2
ACT2
AT744.1
G-26
MIP1B1
SCYA2
C-C Motif Chemokine 4
Secreted Protein G-26
ACT-2
Protein H400
Small-Inducible Cytokine A4

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CCL4 Gene

Chemokine (C-C Motif) Ligand 4

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