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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CCL3 Gene

protein-coding GIFtS: 63
GCID: GC17M034415

chemokine (C-C motif) ligand 3

(Previous name: small inducible cytokine A3 (homologous to mouse Mip-1a)...)
(Previous symbol: SCYA3)

Explore 201 diseases affiliated with
CCL3 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Chemokine (C-C Motif) Ligand 3¹ ²		Macrophage Inflammatory Protein 1-Alpha² ³
SCYA3¹ ² ³ ⁵		Tonsillar Lymphocyte LD78 Alpha Protein² ³
G0S19-1¹ ² ³		SIS-Beta¹
MIP-1-Alpha¹		G0/G1 Switch Regulatory Protein 19-1² ³
MIP1A² ³ ⁵		PAT 464.1² ³
LD78ALPHA¹ ²		C-C Motif Chemokine 3²
Small Inducible Cytokine A3 (Homologous To Mouse Mip-1a)¹ ²		Small-Inducible Cytokine A3³

External Ids:	HGNC: 10627¹	Entrez Gene: 6348²	Ensembl: ENSG00000006075⁷	OMIM: 182283⁵	UniProtKB: P10147³

ORGUL members:
	NONCODE:n342692 n333666 n332780

Export aliases for CCL3 gene to outside databases

Previous GC identifers: GC17M034185 GC17M036451 GC17M034264 GC17M034561 GC17M031439 GC17M030600

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CCL3:

This locus represents a small inducible cytokine. The encoded protein, also known as macrophage inflammatory protein 1

alpha, plays a role in inflammatory responses through binding to the receptors CCR1, CCR4 and CCR5. Polymorphisms at

this locus may be associated with both resistance and susceptibility to infection by human immunodeficiency virus type

1.(provided by RefSeq, Sep 2010)

UniProtKB/Swiss-Prot: CCL3_HUMAN, P10147

Function: Monokine with inflammatory and chemokinetic properties. Binds to CCR1, CCR4 and CCR5. One of the major

HIV-suppressive factors produced by CD8+ T-cells. Recombinant MIP-1-alpha induces a dose-dependent inhibition of

different strains of HIV-1, HIV-2, and simian immunodeficiency virus (SIV)

Gene Wiki entry for CCL3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000017.10 NC_018928.1 NT_010799.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CCL3 gene promoter:
CREB AML1a deltaCREB STAT3
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CCL3 promoter sequence

Search SABiosciences Chromatin IP Primers for CCL3

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCL3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q12

CCL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCL3 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17M034415: view genomic region (about GC identifiers)

Start:	34,415,602 bp from pter	End:	34,417,515 bp from pter
Size:	1,914 bases	Orientation:	minus strand

ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for CCL3

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CCL3_HUMAN, P10147 (See protein sequence)

Recommended Name: C-C motif chemokine 3 precursor

Size: 92 amino acids; 10085 Da

Subunit: Self-associates. Also heterodimer of MIP-1-alpha(4-69) and MIP-1-beta(3-69)

Subcellular location: Secreted

6/8 PDB 3D structures from and Proteopedia for CCL3 (see all 8):

1B50 (3D)

1B53 (3D)

2X69 (3D)

2X6G (3D)

3FPU (3D)

3H44 (3D)

Explore the universe of human proteins at neXtProt for CCL3: NX_P10147

Post-translational modifications:

N-terminal processed form LD78-alpha(4-69) is produced by proteolytic cleavage after secretion from HTLV1-transformed

T-cells¹

View neXtProt modification sites for NX_P10147

CCL3 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_002974.1

ENSEMBL proteins:

ENSP00000225245

Reactome Protein details: P10147
Human Recombinant Protein Products for CCL3:

	EMD Millipore Purified and/or Recombinant CCL3 Protein
	R&D Systems Recombinant & Natural Proteins for CCL3 (CCL3/MIP-1 alpha)
	Browse recombinant and purified proteins available from Enzo Life Sciences
	OriGene Purified Protein: CCL3 OriGene Protein Over-expression Lysate: CCL3 OriGene Custom Protein Services for CCL3
	GenScript Purified and Recombinant Proteins for CCL3
	Novus Biologicals CCL3 Proteins Novus Biologicals CCL3 Lysates
	Browse Sino Biological Recombinant Proteins
	ProSpec Recombinant Protein for CCL3
	Browse Proteins at Uscn

Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	TAS	--
GO:0005615	extracellular space	IDA	--
GO:0005622	intracellular	IDA	10072545
GO:0005737	cytoplasm	IDA	--
GO:0005829	cytosol	IDA	19523456

CCL3 for ontologies About GeneDecksing

CCL3 Antibody Products:

	Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	R&D Systems Antibodies for CCL3 (CCL3/MIP-1 alpha)
	OriGene Antibodies: CCL3 OriGene Custom Antibody Services for CCL3
	GenScript Custom Superior Antibodies Services for CCL3
	Novus Biologicals CCL3 Antibodies
	Abcam antibodies for CCL3
	Browse Antibodies at Uscn
	ThermoFisher Antibodies for CCL3

Assay Products for CCL3:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	R&D Systems Flow Cytometry Kits for CCL3 (CCL3/MIP-1 alpha) (see all)
	GenScript Custom Assay Services for CCL3
	Browse Enzo Life Sciences for kits & assays
	Browse ELISAs and CLIAs at Uscn

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

CCL3 for domains About GeneDecksing

2 InterPro domains/families:

IPR000827 Chemokine_CC_CS

IPR001811 Chemokine_IL8-like_dom

Graphical View of Domain Structure for InterPro Entry P10147

ProtoNet protein and cluster: P10147

1 Blocks protein family: IPB000827 Small chemokine

UniProtKB/Swiss-Prot: CCL3_HUMAN, P10147

Similarity: Belongs to the intercrine beta (chemokine CC) family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: CCL3_HUMAN, P10147

Function: Monokine with inflammatory and chemokinetic properties. Binds to CCR1, CCR4 and CCR5. One of the major

HIV-suppressive factors produced by CD8+ T-cells. Recombinant MIP-1-alpha induces a dose-dependent inhibition of

different strains of HIV-1, HIV-2, and simian immunodeficiency virus (SIV)

Induction: By TPA or PHA (TPA = 12-O-tetradecanoyl phorbol-13 acetate (tumor promoter); PHA = phytohemagglutinin

(T-cell mitogen))

Gene Ontology (GO): 5/9 molecular function terms (GO ID links to tree view) (see all 9): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004672	protein kinase activity	IDA	10734056
GO:0004698	calcium-dependent protein kinase C activity	IDA	15764707
GO:0005515	protein binding	IPI	--
GO:0008009	chemokine activity	IDA	10660125
GO:0016004	phospholipase activator activity	IDA	10734056

CCL3 for ontologies About GeneDecksing

Phenotypes:
1 GenomeRNAi human phenotype for CCL3:

Increased G1 DNA content

9 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Ccl3):

behavior/neurological	cellular	digestive/alimentary	growth/size	hematopoietic system
homeostasis/metabolism	immune system	mortality/aging	nervous system

CCL3 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-out Ccl3^tm1Unc for CCL3

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CCL3

miRNA Products:		OriGene 3'-UTR Clone: CCL3 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCL3
		8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate CCL3 (see all 9):
		hsa-miR-98 hsa-let-7d hsa-let-7c hsa-let-7i hsa-let-7e hsa-let-7g hsa-let-7b hsa-let-7f

		SwitchGear 3'UTR luciferase reporter plasmid: CCL3 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCL3 (see all 7) OriGene shRNA RFP: CCL3 OriGene siRNA: CCL3
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCL3
		Sirion Biotech Custom design and validation of potent shRNA sequences against CCL3

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for CCL3
			Sirion Biotech Customized adenovirus for overexpression of CCL3 Sirion Biotech Customized adenovirus for potent knockdown of CCL3

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCL3 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCL3 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CCL3 (NM_002983)
		Sino Biological Human cDNA Clone for CCL3
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCL3
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCL3

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for CCL3
		Search LifeMap BioReagents cell lines for CCL3
		Sirion Biotech Customized stable knockdown cell line services for CCL3 Sirion Biotech Customized inducible knockdown cell line services for CCL3 Sirion Biotech Customized stable overexpressing cell line services for CCL3 Sirion Biotech Customized inducible overexpressing cell line services for CCL3

In Situ Assay
Products:

Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CCL3

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/18 super-pathways (see all 18) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

PEDF Induced Signaling

8/12 pathways (see all 12)
PEDF Induced Signaling	1.00	STAT3 Pathway	0.47
MIF Mediated Glucocorticoid Regulation	0.73	Endothelin-1 Signaling Pathway	0.44
MIF Regulation of Innate Immune Cells	0.71	NFAT Signaling and Lymphocyte Interactions	0.37
IL-6 Pathway	0.61	PGC1Alpha Pathway	0.33

TGF-Beta Pathway

TGF-Beta Pathway	1.00	JNK Pathway	0.50
MAPK Family Pathway	0.60	Regulation of eIF4 and p70S6K	0.43
JAK-STAT Pathway	0.57	SOCS Pathway	0.29

Class A/1 (Rhodopsin-like receptors)

	Class A/1 (Rhodopsin-like receptors)	1.00			Peptide ligand-binding receptors	0.61
	GPCR ligand binding	0.75

Akt Signaling

	Akt Signaling	1.00			Tec Kinases Signaling	0.55
	p38 Signaling	0.60

Rho Family GTPases

	Rho Family GTPases	1.00			Molecular Mechanisms of Cancer	0.51
	ERK Signaling	0.61

Pathway sources
See GeneCards unified pathways
Show all pathways

1 EMD Millipore Pathway for CCL3

Selected targets of C/EBPbeta

1 R&D Systems Pathway for CCL3

IL-15 Signaling and its Primary Biological Effects in Different Immune Cell Types

5/29 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CCL3 (see all 29)

	Endothelin-1 Signaling Pathway
	Molecular Mechanisms of Cancer
	Antioxidant Action of Vitamin-C
	NFAT Signaling and Lymphocyte Interactions
	JNK Pathway

3 BioSystems Pathways for CCL3

	Senescence and Autophagy
	Toll-like receptor signaling pathway
	IL12-mediated signaling events

5/6 Reactome Pathways for CCL3 (see all 6)

	Peptide ligand-binding receptors
	Chemokine receptors bind chemokines
	Signal Transduction
	Signaling by GPCR
	GPCR ligand binding

5 Kegg Pathways (Kegg details for CCL3):

	Cytokine-cytokine receptor interaction
	Chemokine signaling pathway
	Toll-like receptor signaling pathway
	Chagas disease (American trypanosomiasis)
	Rheumatoid arthritis

CCL3 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for CCL3

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/29 Interacting proteins for CCL3 (P10147^{2, 3} ENSP00000225245⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 29)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
IDE	P14735²^,³, ENSP00000265986⁴	MINT-8087623 MINT-8087747 MINT-8087595 I2D: score=1 STRING: ENSP00000265986
CCBP2	O00590³, ENSP00000273145⁴	I2D: score=3 STRING: ENSP00000273145
CCR4	P51679³, ENSP00000332659⁴	I2D: score=2 STRING: ENSP00000332659
SRGN	P10124³, ENSP00000242465⁴	I2D: score=2 STRING: ENSP00000242465
CCR3	P51677³, ENSP00000350003⁴	I2D: score=1 STRING: ENSP00000350003

About this table

Gene Ontology (GO): 5/51 biological process terms (GO ID links to tree view) (see all 51): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000165	MAPK cascade	IMP	--
GO:0001649	osteoblast differentiation	IEP	--
GO:0001775	cell activation	IDA	10706735
GO:0002548	monocyte chemotaxis	IDA	10706735
GO:0006468	protein phosphorylation	IDA	10734056

CCL3 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

CCL3 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CCL3
10/106 Novoseek chemical compound relationships for CCL3 gene (see all 106) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
rantes	97.5	1169	8616572 (6), 11861332 (6), 9417081 (6), 9746565 (6) (see all 99)
ccl3	95.3	411	17357337 (9), 20047691 (7), 18619972 (7), 19055602 (7) (see all 99)
mip 1alpha	87.3	29	18403790 (5), 16211583 (3), 11097208 (2), 20205697 (2) (see all 18)
ccl4	78.3	152	15585374 (3), 19383907 (3), 16773571 (3), 18447713 (2) (see all 89)
groalpha	76.6	19	10437780 (2), 10337033 (2), 20308302 (1), 11598150 (1) (see all 13)
tarc	73.3	18	15941911 (2), 9169480 (2), 15488706 (1), 19270434 (1) (see all 13)
peedck	63.5	2	1949198 (1), 1343739 (1)
larc	62.7	9	18492658 (2), 16911361 (1), 9153236 (1), 9169480 (1) (see all 7)
mcp 1	62.4	8	20205697 (2), 15660413 (1), 11683586 (1), 16918500 (1) (see all 5)
il 10	53.4	6	9851514 (1), 18403790 (1), 11240512 (1), 15544634 (1) (see all 5)

Search CenterWatch for drugs/clinical trials and news about CCL3

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CCL3 gene:

NM_002983.2

Unigene Cluster for CCL3:

Chemokine (C-C motif) ligand 3

Hs.514107 [show with all ESTs]

Unigene Representative Sequence: AL575305

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000225245 ENST00000470334(uc002hkv.3) ENST00000585830

miRNA Products:		OriGene 3'-UTR Clone: CCL3 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCL3
		8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate CCL3 (see all 9):
		hsa-miR-98 hsa-let-7d hsa-let-7c hsa-let-7i hsa-let-7e hsa-let-7g hsa-let-7b hsa-let-7f

		SwitchGear 3'UTR luciferase reporter plasmid: CCL3 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCL3 (see all 7) OriGene shRNA RFP: CCL3 OriGene siRNA: CCL3
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCL3
		Sirion Biotech Custom design and validation of potent shRNA sequences against CCL3

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCL3 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCL3 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: CCL3 (NM_002983)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCL3
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCL3

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCL3 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse / rat CCL3
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCL3
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCL3

Additional cDNA sequence:

AF043339.1 BC071834.1 BC171831.1 BC171891.1 D00044.1 D63785.1 M23452.1 M25315.1

X03754.1

6 DOTS entries:

DT.100035793 DT.449023 DT.97858828 DT.100759261 DT.91762186 DT.92038815

24/125 AceView cDNA sequences (see all 125):

CA431873 CB242004 AA381205 BM673241 CR591007 CR595320 AF043339 CA449967

AA382200 AA864342 AA894533 CA305944 BM923819 AA362355 AA382124 AA361920

BX103455 CR620842 AA362356 M25315 BX356973 BM918492 CR591252 M23452

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CCL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image

CCL3 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Bone

Zeugopod Periosteum

Bone

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See CCL3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCL3

SOURCE GeneReport for Unigene cluster: Hs.514107

SABiosciences Expression via Pathway-Focused PCR Arrays including CCL3 (see all 14):

Nephrotoxicity in human mouse rat

HIV Host Response in human mouse rat

Fibrosis in human mouse rat

Antiviral Response in human mouse rat

Multiple Sclerosis in human mouse rat

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCL3 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse / rat CCL3
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCL3
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCL3

In Situ
Assay Products:

Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CCL3

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CCL3 gene from 1/6 species (see all 6) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
zebrafish (Danio rerio)	Actinopterygii	zgc:193706⁶ si:dkeyp-59a8.3⁶ (see all 6)	si:dkeyp-59a8.3 (see all 6)	33(a) 30(a) (see all 6)	many ↔ many many ↔ many (see all 6)	25(25902180-25904281) 20(38310380-38311158)

ENSEMBL Gene Tree for CCL3 (if available)
TreeFam Gene Tree for CCL3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for CCL3 gene

CCL15² CCL16² CCL2² CCL14² CCL24² CCL4L1² CCL11² CCL4L2²

CCL7² CCL3L1² CCL5² CCL23² CCL3L3² CCL4² CCL8² CCL13²

CCL26² CCL18²

18/28 SIMAP similar genes for CCL3 using alignment to 2 protein entries: CCL3_HUMAN (see all proteins) (see all similar genes):

CCL3L1 CCL3L3 CCL4 CCL4L2 LOC728835 CCL14

CCL4L1 CCL18 CCL16 CCL5 CCL7 MCP-3

CCL11 CCL13 CCL15 CCL2 CCL26 CCL8

CCL3 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for CCL3
PGOHUM00000262953

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs2522124^1,2	C,A	--	30599681(+)	`tgaccG/Ttttac`	1	--	ds500¹		0	--	--	--	--
rs2522125^1,2	C,A	--	30599687(+)	`tttacA/Gtgctg`	1	--	ds500¹		0	--	--	--	--
rs764871^1,2	C,A	--	30599803(+)	`aatgaG/Acaatg`	1	--	ds500¹		4		NA WA	242
rs5820143^1,2	C	--	30599824(+)	`ACTCA-/GTAGGA`	1	--	ds500¹		0	--	--	--	--
rs113282640^1,2		--	30599914(+)	`AATGGT/CGGCCA`	1	--	ds500¹		2		CSA WA	120
rs3169944^1,2		--	30600165(-)	`AGATGC/TTCTTT`	1	--	ut3¹		0	--	--	--	--
rs111443598^1,2		--	30600204(+)	`CTGAAG/CAAAAG`	1	--	ut3¹		1		CSA	2
rs8951^1,2	C,O,A	--	30600267(+)	`CAGGCT/CGATGA`	1	--	ut3¹ ese³		7		MN NA CSA EA	474
rs8070375^1,2	C	--	30600376(+)	`taaatC/Tacaaa`	1	--	ut3¹		0	--	--	--	--
rs41360951^1,2	C	--	30600403(-)	`ATTTTA/TATTTA`	1	--	ut3¹		1		NA	48

HapMap Linkage Disequilibrium report for CCL3 (34415602 - 34417515 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 19 variations for CCL3
15/18 CNVs (see all 18): 88435 30824 88441 72879 88440 77579 8842 34507 3142 77575 72873 88434 72887 77577 77578
1 Indel: 11125

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

CCL3 for disorders           About GeneDecksing

OMIM gene information: 182283
OMIM disorders: 609423
20/201 diseases for CCL3 (see all 201):    About MalaCards

african tick-bite fever htlv-1 associated myelopathy monoclonal gammopathy of undetermined significance tick-borne encephalitis

periapical granuloma hermansky-pudlak syndrome stachybotrys chartarum immunodeficiency

niemann-pick disease diffuse large b-cell lymphoma acid sphingomyelinase deficiency tropical spastic paraparesis

human immunodeficiency virus infectious disease carpal tunnel syndrome graft versus host disease spastic paraparesis

mycobacterial infection b-cell lymphomas temporal lobe epilepsy plasmodium falciparum malaria

5 diseases from the University of Copenhagen DISEASES database for CCL3:

Lung disease Human immunodeficiency virus infectious disease Multiple sclerosis Arthritis

Multiple myeloma

10/95 Novoseek disease relationships for CCL3 gene (see all 95) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
necrosis	71.1	266	14693736 (2), 14586377 (2), 20396789 (2), 11083814 (2) (see all 99)
inflammation	70.6	63	10209033 (2), 9841832 (2), 11803002 (2), 7509730 (1) (see all 46)
bone destruction	61.1	19	15043189 (4), 11748267 (3), 16263571 (1), 16982321 (1) (see all 9)
immunodeficiency	59.3	46	9359702 (2), 10979927 (2), 8570619 (1), 9870314 (1) (see all 38)
hiv infections	56	22	11120614 (3), 10875609 (1), 18332855 (1), 18221152 (1) (see all 16)
bronchoalveolar lavage fluid	53.4	20	8616572 (1), 15802346 (1), 11790661 (1), 12449175 (1) (see all 18)
tumors	51.6	283	15139590 (5), 12649140 (4), 10679114 (2), 14693736 (2) (see all 99)
myeloma	51.2	60	16263571 (5), 12548580 (4), 15043189 (4), 15730850 (4) (see all 25)
bone diseases	50.5	27	14510950 (4), 17022050 (2), 11748267 (2), 16263571 (1) (see all 12)
virus infection	44.5	14	18492658 (1), 10501489 (1), 17547763 (1), 10669379 (1) (see all 13)

Genetic Association Database (GAD): CCL3
Human Genome Epidemiology (HuGE) Navigator: CCL3 (28 documents)

Export disorders for CCL3 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for CCL3 gene, integrated from 9 sources (see all 1401):
(articles sorted by number of sources associating them with CCL3)

Utopia: connect your pdf to the dynamic
world of online information

Macrophage inflammatory protein-1. (PubMed id 12401480)^{1, 2, 9} Menten P.... Van Damme J. (2002)
Identification of amino acid residues critical for aggregation of human CC chemokines macrophage inflammatory protein (MIP)-1alpha, MIP- 1beta, and RANTES. Characterization of active disaggregated chemokine variants. (PubMed id 10347159)^{1, 2, 9} Czaplewski L.G.... Hunter M.G. (1999)
MCP-1 and MIP-1A gene polymorphisms in Japanese patients with sarcoidosis. (PubMed id 12413001)^{1, 4, 9} Takada T....Gejyo F. (2002)
Three human homologs of a murine gene encoding an inhibitor of stem cell proliferation. (PubMed id 2271120)^{1, 2, 9} Blum S.... Forsdyke D.R. (1990)
Structures of human genes coding for cytokine LD78 and their expression. (PubMed id 1694014)^{1, 2, 9} Nakao M.... Shimada K. (1990)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Natural truncation of the chemokine MIP-1beta/CCL4 affects receptor specificity but not anti-HIV-1 activity. (PubMed id 12070155)^{1, 2} Guan E.... Norcross M.A. (2002)
Identification of a glycosaminoglycan-binding site in chemokine macrophage inflammatory protein-1alpha. (PubMed id 9092555)^{1, 2} Koopmann W. and Krangel M.S. (1997)
Identification of RANTES, MIP-1 alpha, and MIP-1 beta as the major HIV-suppressive factors produced by CD8+ T cells. (PubMed id 8525373)^{1, 2} Cocchi F....Lusso P. (1995)
Identification of MIP-1 alpha/LD78 as a monocyte chemoattractant released by the HTLV-I-transformed cell line MT4. (PubMed id 7537510)^{1, 2} Bertini R....Mantovani A. (1995)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 6348	HGNC: 10627	AceView: CCL3	Ensembl:ENSG00000006075	euGenes: HUgn6348
ECgene: CCL3	Kegg: 6348	H-InvDB: CCL3

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CCL3	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for CCL3	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/Macrophage_Inflammatory_Protein

Intellectual Property for CCL3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for CCL3 gene:
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GeneCards and IP:
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chemokine (C-C motif) ligand 3

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CCL3 Gene

chemokine (C-C motif) ligand 3

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