CCL2 Gene
protein-coding GIFtS : 69
GC17P029606
chemokine (C-C motif) ligand 2 (Previous names: small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: SCYA2 )
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Aliases & Descriptions for CCL2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases GDCF-2 1 , 2 HC11 1 , 2 , 3 HSMCR30 2 MCAF 1 , 2 , 3 , 5 MCP-1 1 , 2 , 3 MCP1 1 , 2 , 3 , 5 MGC9434 1 , 2 SCYA2 2 , 3 , 5 SMC-CF 1 , 2
Descriptions Monocyte chemoattractant protein 1 3 Monocyte chemotactic and activating factor 2 , 3 Monocyte chemotactic protein 1 3 Monocyte secretory protein JE 2 , 3 Small-inducible cytokine A2 3 chemokine (C-C motif) ligand 2 2 monocyte chemoattractant protein-1 2 small inducible cytokine A2 2 small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je) 1 , 2 small inducible cytokine subfamily A (Cys-Cys), member 2 2
Search outside databases for aliases for CCL2 genePrevious GC identifers: GC17P032352 GC17P034621 GC17P032727
Summaries for CCL2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CCL2 : This gene is one of several cytokine genes clustered on the q-arm of chromosome 17. Cytokines are afamily of secreted proteins involved in immunoregulatory and inflammatory processes. The proteinencoded by this gene is structurally related to the CXC subfamily of cytokines. Members of thissubfamily are characterized by two cysteines separated by a single amino acid. This cytokinedisplays chemotactic activity for monocytes and basophils but not for neutrophils or eosinophils.It has been implicated in the pathogenesis of diseases characterized by monocytic infiltrates,like psoriasis, rheumatoid arthritis and atherosclerosis. It binds to chemokine receptors CCR2 andCCR4. [provided by RefSeq] UniProtKB/Swiss-Prot: CCL2_HUMAN, P13500 Function : Chemotactic factor that attracts monocytes and basophils but not neutrophils oreosinophils. Augments monocyte anti-tumor activity. Has been implicated in the pathogenesis ofdiseases characterized by monocytic infiltrates, like psoriasis, rheumatoid arthritis oratherosclerosis. May be involved in the recruitment of monocytes into the arterial wall during thedisease process of atherosclerosis
Gene Wiki entry for CCL2
Genomic Location for CCL2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CCL2 gene Entrez Gene cytogenetic band: 17q11.2-q12 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q11.2-q21.1 CCL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P029606:
(about GC identifiers )
Start:
29,606,409 bp from pter
End:
29,608,335 bp from pter
Size:
1,927 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010799.14 Proteins for CCL2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CCL2_HUMAN, P13500 (See
protein sequence )Recommended Name: C-C motif chemokine 2 precursor Size : 99 amino acids; 11025 Da
Subunit : Monomer or homodimer; in equilibrium. Binds to CCR2 and CCR4. Is tethered on endothelialcells by glycosaminoglycan (GAG) side chains of proteoglycans
Subcellular location : Secreted
PDB structures from and Proteopedia : 1DOK (3D)
 1DOL (3D)
 1DOM (3D)
 1DON (3D)
 1MCA (3D)
 1ML0 (3D)
 2BDN (3D)
 2NZ1 (3D)
 
Secondary accessions : Q9UDF3
Post-translational modifications:
Processing at the N-terminus can regulate receptor and target cell selectivity. Deletion of theN-terminal residue converts it from an activator of basophil to an eosinophil chemoattractant1
REFSEQ proteins: NP_002973.1 ENSEMBL proteins: ENSP00000225831 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CCL2: Assays for CCL2:
Protein
Domains/ Families for CCL2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P13500 ProtoNet protein and cluster: P13500
1 Blocks protein family : IPB000827 Small chemokine UniProtKB/Swiss-Prot: CCL2_HUMAN, P13500 Similarity : Belongs to the intercrine beta (chemokine CC) family
Gene Function for CCL2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002982 Applied Biosystems Silencer ® siRNAs for CCL2 Sigma-Aldrich siRNA and siRNA Panels for CCL2 Sigma-Aldrich shRNA Panels and shRNA for CCL2 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002982                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002982                                  untagged cDNA clone in CMV expression vector: NM_002982  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002982 UniProtKB/Swiss-Prot: CCL2_HUMAN, P13500 Function : Chemotactic factor that attracts monocytes and basophils but not neutrophils oreosinophils. Augments monocyte anti-tumor activity. Has been implicated in the pathogenesis ofdiseases characterized by monocytic infiltrates, like psoriasis, rheumatoid arthritis oratherosclerosis. May be involved in the recruitment of monocytes into the arterial wall during thedisease process of atherosclerosis
8 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ccl2) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for CCL2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/8 Sigma-Aldrich "Your Favorite Gene" Pathways for CCL2 (Your Favorite Gene powered by Ingenuity) (see all 8
) Gene Network CentralTM Interacting Genes and Proteins Network for CCL2 5/152 Interacting proteins for CCL2 (ENSP00000225831 3 P13500 1 ) via UniProtKB, MINT, and/or STRING (see all 152
)About this table 5/18 Gene Ontology (GO) biological process terms (links to tree view) (see all 18
):
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Drugs & Compounds for CCL2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CCL2 10/49 Novoseek chemical compound relationships for CCL2 gene (see all 49
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
rantes
96.03
1518
11750041 (8), 8616572 (7), 15631778 (7), 17353158 (7) (see all 99 )
mcp 1
82.98
45
16091493 (4), 18045859 (3), 18353886 (3), 19243600 (2) (see all 25 )
ccl3
81.85
114
16105698 (5), 18070228 (4), 18270300 (4), 12010572 (3) (see all 64 )
groalpha
79.10
58
10540194 (4), 16213701 (4), 16869002 (4), 15044249 (3) (see all 28 )
grogamma
69.38
8
15832427 (2), 10467937 (2), 15972545 (1), 11808935 (1) (see all 5 )
tarc
68.87
35
12911508 (2), 11533168 (2), 15142882 (2), 14630994 (2) (see all 20 )
grobeta
61.63
6
15832427 (2), 12556377 (1), 11808935 (1), 17442617 (1)
bindarit
61.34
13
18827968 (4), 10477401 (2), 17460736 (1), 9507220 (1)
mip 1alpha
56.76
4
16211583 (1), 15932509 (1), 10559777 (1), 19308263 (1)
il 10
53.76
25
15975968 (3), 15544634 (3), 15281432 (2), 16205314 (1) (see all 14 )
About this table 1 PharmGKB drug compound relationship for CCL2 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
glucocorticoids FA  10502563
About this table
Transcripts for CCL2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002982 Sigma-Aldrich siRNA and siRNA Panels for CCL2 Sigma-Aldrich shRNA Panels and shRNA for CCL2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002982
REFSEQ mRNAs for CCL2 gene: NM_002982.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002982
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002982                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002982                                  untagged cDNA clone in CMV expression vector: NM_002982  
Additional cDNA sequence: AK311308.1 AK311960.1 BC009716.1 BT007329.1 M24545.1 M28226.1 S69738.1 S71513.1 X14768.1
5 DOTS entries : DT.217745 DT.100795505 DT.100795508 DT.100795510 DT.91845238
24/231 AceView cDNA sequences (see all 231
):AW849229 BU192217 AI692798 AL697816 R80529 T29155 H99781 AW772091 X14768 BI793067 BC009716 AA047099 BM704915 S71513 NM_002982 BM708613 AW241657 BE671641 AI927247 AI097531 CK902135 AI817756 BQ224954 AI075862
highest scoring ESTs for CCL2 :AA024753 AA024754 AA047099 AA047236 AA317121 AA327711 AA362116 AA425102 AA429323 AA614521
Unigene Cluster for CCL2: Chemokine (C-C motif) ligand 2 Hs.303649 [show with all ESTs ] Unigene Representative Sequence: BU570769 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for CCL2 ExUns: 1a · 1b ^ 2 ^ 3a · 3b SP1 :           SP2 :          
About this scheme ECgene alternative splicing isoforms for CCL2 1 Ensembl transcript including schematic representation : ENST00000225831
Expression for CCL2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CCL2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CCL2 1 / 2 / 3
5 probe-sets matching CCL2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTACTAGTGTSOURCE GeneReport for Unigene cluster: Hs.303649 Expression variation in blood from EXPOLDB for CCL2
Orthologs for CCL2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CCL2 gene from 5 species
About this table Species with no ortholog for CCL2 ENSEMBL Gene Tree for CCL2 Paralogs for CCL2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CCL2 gene CCL11 2 CCL13 2 CCL7 2 CCL26 2 CCL8 2 CCL16 2 CCL24 2
SNPs/Variants for CCL2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: CCL2_HUMAN, P13500 Polymorphism : Genetic variations in CCL2 determine Mycobacterium tuberculosis susceptibility[MIM:607948]
HapMap Linkage Disequilibrium images for CCL2 (up to first 250kb)
Disorders & Mutations for CCL2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 158105
10/97 Novoseek disease relationships for CCL2 gene (see all 97
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation
85.43
497
15104334 (4), 11739289 (4), 17977946 (4), 7891256 (3) (see all 99 )
necrosis
82.01
916
15626982 (5), 7635182 (3), 15223398 (3), 16407046 (3) (see all 99 )
atherosclerosis
78.49
250
17521622 (5), 15894320 (4), 15519012 (4), 12578870 (3) (see all 99 )
tumors
66.50
1055
15883814 (5), 9111518 (5), 15626982 (5), 16278381 (5) (see all 99 )
atherosclerotic plaque
64.27
26
14739122 (2), 16934270 (1), 15514167 (1), 17276989 (1) (see all 16 )
rheumatoid arthritis
56.17
56
16740681 (3), 12826377 (2), 11411959 (2), 14626631 (2) (see all 37 )
bronchoalveolar lavage fluid
54.74
40
8890891 (3), 10515417 (2), 10489845 (2), 8616572 (1) (see all 28 )
fibrosis idiopathic pulmonary
52.79
24
10515417 (2), 8118632 (2), 11031344 (1), 19060230 (1) (see all 14 )
lupus nephritis
51.93
39
11780369 (7), 8558841 (6), 16334978 (4), 15119544 (2) (see all 14 )
diabetic nephropathies
50.88
65
11835523 (7), 11012884 (6), 17045117 (4), 10916091 (3) (see all 31 )
About this table Human Gene Mutation Database : CCL2 Genetic Association Database: CCL2 Human Genome Epidemiology Navigator: CCL2 (159 documents)
Medical News for CCL2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CCL2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/2848 PubMed articles for CCL2 gene (see all 2848
): A functional promoter polymorphism in monocyte chemoattractant protein-1 is associated with increased susceptibility to pulmonary tuberculosis. (PubMed id 16352737) 1, 3, 4, 6 Flores-Villanueva P.O.... Granados J. (2005) Polymorphism of the monocyte chemoattractant protein (MCP-1) gene is associated with the plasma level of MCP-1 but not with carotid intima-media thickness. (PubMed id 14620921) 1, 3, 6 Tabara Y....Miki T. (2003) CCL2 polymorphisms are associated with serum monocyte chemoattractant protein-1 levels and myocardial infarction in the Framingham Heart Study. (PubMed id 16116069) 1, 3, 6 McDermott D.H....Benjamin E.J. (2005) MCP-1 gene (SCYA2) and schizophrenia: a case-control association study. (PubMed id 15389752) 1, 3, 6 Mundo E....Gennarelli M. (2005) Monocyte chemoattractant protein-1 (MCP-1) gene polymorphism and risk of Alzheimer's disease in Italians. (PubMed id 15288699) 1, 3, 6 Pola R....Pola P. (2004) Caucasian patients with type 2 diabetes mellitus have elevated levels of monocyte chemoattractant protein-1 that are not influenced by the -2518 A-->G promoter polymorphism. (PubMed id 16050950) 1, 3, 6 Zietz B....Schaffler A. (2005) The correlation between monocyte chemoattractant protein-1 and the arthritis of systemic lupus erythematosus among Chinese. (PubMed id 15611878) 1, 3, 6 Ye D.Q....Zhang X.J. (2005) Association study of functional genetic variants of innate immunity related genes in celiac disease. (PubMed id 16078996) 1, 3, 6 Rueda B....Koeleman B.P. (2005) MCP-1 gene regulatory region polymorphism in Chinese children with mild, moderate and near-fatal asthma. (PubMed id 15005768) 1, 3, 6 Yao T.C....Huang J.L. (2004) Polymorphism of monocyte chemoattractant protein 1 in Crohn's disease. (PubMed id 12904997) 1, 3, 6 Herfarth H....Rogler G. (2003)
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Genome Databases showing CCL2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CCL2
(According to HUGE )
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Specialized Databases showing CCL2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for CCL2 gene: Services for CCL2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CCL2:
Antibodies & Assays for CCL2  
Recombinant Proteins (MCP1 ) Antibodies (MCP1 )
Search Tocris compounds for CCL2
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Aliases for CCL2
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009