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CCL15-CCL14 Gene

protein-coding   GIFtS: 17
GCID: GC17M034392

CCL15-CCL14 Readthrough (NMD Candidate)

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
CCL15-CCL14 Readthrough (NMD Candidate)1 2

External Ids:    HGNC: 444361   Entrez Gene: 3482492   Ensembl: ENSG000001615747   

Export aliases for CCL15-CCL14 gene to outside databases

Previous GC identifers: GC17M034316 GC17M034348


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for CCL15-CCL14 Gene:
A cluster of CC chemokine genes exists on chromosome 17q11.2. The CC chemokines are secreted proteins
characterized by two adjacent cysteines. The genes chemokine (C-C motif) ligand 14 and chemokine (C-C motif)
ligand 15 are adjacent loci and express read-through transcripts spanning both loci. The read-through transcripts
were originally interpreted as bicistronic transcripts, but they are represented as non-coding because they are
candidates for nonsense-mediated mRNA decay (NMD). (provided by RefSeq, Dec 2009)

GeneCards Summary for CCL15-CCL14 Gene:
CCL15-CCL14 (CCL15-CCL14 readthrough (NMD candidate)) is a protein-coding gene. An important paralog of this gene is CCL15.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for CCL15-CCL14
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCL15-CCL14


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q12   Ensembl cytogenetic band:  17q12   HGNC cytogenetic band: 17q12

CCL15-CCL14 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCL15-CCL14 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M034392:  view genomic region     (about GC identifiers)

Start:
34,310,692 bp from pter      End:
34,329,084 bp from pter
Size:
18,393 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --

ENSEMBL proteins: 
 ENSP00000435993   ENSP00000432034  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 4 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005102receptor binding ----
GO:0008009chemokine activity ----
GO:0008201heparin binding ----
GO:0042056chemoattractant activity ----
     
Find genes that share ontologies with CCL15-CCL14           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region ----
GO:0005615extracellular space ----

Find genes that share ontologies with CCL15-CCL14           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCL15-CCL14
Interactions:

    Search GeneGlobe Interaction Network for CCL15-CCL14

Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006874cellular calcium ion homeostasis ----
GO:0006935chemotaxis ----
GO:0006955immune response ----
GO:0007165signal transduction ----
GO:0007267cell-cell signaling ----

Find genes that share ontologies with CCL15-CCL14           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for CCL15-CCL14



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000495214 ENST00000481427
miRNA
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Selected AceView cDNA sequences (see all 135):

BM677878 BC045165 AA515108 BC038289 NM_032963 AK122606 BC050647 NM_004590 
H22089 AW117461 BX284026 AA345971 NM_145898 AA699362 AF039955 NM_005064 
AW827147 BI837334 CD743105 BV202007 AA916836 CB243091 AI707519 NM_032962 

GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for CCL15-CCL14    About this scheme

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c
SP1:                          -                       -                           
SP2:                          -                 -     -                           
SP3:                                                                              
SP4:                                            -     -                           
SP5:                                                                              


ECgene alternative splicing isoforms for CCL15-CCL14

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

CCL15-CCL14 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for CCL15-CCL14 gene from Selected species (see all 6)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
zebrafish
(Danio rerio)
Actinopterygii ZGC:1937066
chemokine CCL-C25y-like (LOC100000034), mRNA
30(a)
1 → many
25(25902180-25904281) ENSDARG00000070378
        Species with no ortholog for CCL15-CCL14

ENSEMBL Gene Tree for CCL15-CCL14 (if available)
TreeFam Gene Tree for CCL15-CCL14 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for CCL15-CCL14 gene
CCL152  CCL162  CCL142  CCL4L12  CCL3L12  CCL4L22  CCL262  CCL32  
CCL52  CCL232  CCL3L32  CCL182  CCL42  

Find genes that share paralogs with CCL15-CCL14           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for CCL15-CCL14 (see all 168)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 17 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1855254941,2
--34315807(+) CATCAC/TCTGTA 2 -- int10--------
rs739926561,2
C,F--34315907(+) AGGGAT/ATGAAG 2 -- int13Minor allele frequency- A:0.03WA EA 240
rs1416879321,2
--34315914(+) GAAGAC/TGACCC 2 -- int10--------
rs1900050761,2
--34316062(+) AGAGCA/CTATTT 2 -- int10--------
rs1930552371,2
--34316068(+) TATTTA/TAAAAA 2 -- int10--------
rs739926571,2
C--34316123(+) AAAAAC/TTGAAT 2 -- int13Minor allele frequency- T:0.03WA NA 240
rs72235101,2
H--34316252(+) TATAAG/AAATAT 2 -- int14Minor allele frequency- A:0.00NS EA 418
rs789816101,2
C,F--34316330(+) TTTAAT/CCTTGT 2 -- int12Minor allele frequency- C:0.02NA EA 240
rs763357061,2
C,F--34316721(+) ACCTCC/TGGGGT 2 -- int12Minor allele frequency- T:0.50WA CSA 4
rs1848466231,2
C--34316729(+) GGTTCA/GAGTGA 2 -- int10--------

HapMap Linkage Disequilibrium report for CCL15-CCL14 (34310692 - 34329084 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for CCL15-CCL14: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing CCL15-CCL14
DNA2.0 Custom Variant and Variant Library Synthesis for CCL15-CCL14

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for CCL15-CCL14 gene integrated from 10 sources:
(articles sorted by number of sources associating them with CCL15-CCL14)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (PLoS ONE 2010)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  3. Hemofiltrate CC chemokines with unique biochemical properties: HCC-1/CCL14a and HCC-2/CCL15. (PubMed id 11527984)1 Forssmann U....Forssmann W.G. (J. Leukoc. Biol. 2001)
  4. Organization of the chemokine gene cluster on human chromosome 17q11.2 containing the genes for CC chemokine MPIF-1, HCC-2, LEC, and RANTES. (PubMed id 10213461)1 Nomiyama H.... Yoshie O. (J. Interferon Cytokine Res. 1999)
  5. HCC-2, a human chemokine: gene structure, expression pattern, and biological activity. (PubMed id 9600961)1 Pardigol A.... Maegert H.-J. (Proc. Natl. Acad. Sci. U.S.A. 1998)
  6. A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. (PubMed id 8661057)1 Naruse K....Miura R. (Genomics 1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 348249 HGNC: 44436 AceView: CCL16andCCL23 Ensembl:ENSG00000161574 euGenes: HUgn348249
ECgene: CCL15-CCL14 H-InvDB: CCL15-CCL14

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for CCL15-CCL14 gene:
Search GeneIP for patents involving CCL15-CCL14

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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