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Aliases for CCER2 Gene

Aliases for CCER2 Gene

  • Coiled-Coil Glutamate Rich Protein 2 2 3 5
  • Coiled-Coil Glutamate-Rich Protein 2 2

External Ids for CCER2 Gene

Previous GeneCards Identifiers for CCER2 Gene

  • GC19M039400

Summaries for CCER2 Gene

GeneCards Summary for CCER2 Gene

CCER2 (Coiled-Coil Glutamate Rich Protein 2) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCER2 Gene

Genomics for CCER2 Gene

Regulatory Elements for CCER2 Gene

Enhancers for CCER2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G039397 2 FANTOM5 ENCODE dbSUPER 10.7 -492.7 -492705 20.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ENSG00000205041 EID2B ZFP36 FBL RPS16 SUPT5H ENSG00000269069 RN7SL566P ENSG00000269688 MED29
GH19G038919 1.5 FANTOM5 ENCODE 0.4 -5.8 -5772 1.5 AGO1 ZFP64 FEZF1 YBX1 YY1 ZNF143 ZNF416 ZNF263 SP3 TBX21 FBL EID2B SARS2 RN7SL566P ENSG00000269688 RPS16 ENSG00000269486 MED29 SUPT5H DLL3
GH19G038918 0.8 ENCODE 0.7 -3.9 -3866 0.2 ELF3 FOXA2 SIN3A RAD21 RARA ZNF23 GLIS2 KLF7 THAP11 ZNF263 CCER2 MRPS12
GH19G038928 1.2 ENCODE 0.4 -15.6 -15634 4.0 CREB3L1 AGO1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 NFYC TBX21 SARS2 FBXO17 FBL MRPS12 CCER2
GH19G038924 1.1 FANTOM5 ENCODE 0.4 -10.5 -10539 1.6 CTCF KLF17 ZMYM3 ZNF335 HIC1 GLIS2 ZFHX2 POLR2A PRDM10 EGR2 SARS2 ENSG00000267892 NFKBIB ZFP36 MAP4K1 HNRNPL MRPS12 CCER2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCER2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCER2 Gene

Chromosome:
19
Start:
38,908,980 bp from pter
End:
38,914,370 bp from pter
Size:
5,391 bases
Orientation:
Minus strand

Genomic View for CCER2 Gene

Genes around CCER2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCER2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCER2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCER2 Gene

Proteins for CCER2 Gene

  • Protein details for CCER2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    I3L3R5-CCER2_HUMAN
    Recommended name:
    Coiled-coil domain-containing glutamate-rich protein 2
    Protein Accession:
    I3L3R5

    Protein attributes for CCER2 Gene

    Size:
    266 amino acids
    Molecular mass:
    30352 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCER2 Gene

Post-translational modifications for CCER2 Gene

No Post-translational modifications

Other Protein References for CCER2 Gene

No data available for DME Specific Peptides for CCER2 Gene

Domains & Families for CCER2 Gene

Protein Domains for CCER2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCER2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCER2 Gene

Function for CCER2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCER2 Gene

Localization for CCER2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCER2 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for CCER2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with CCER2: view

No data available for Subcellular locations from COMPARTMENTS for CCER2 Gene

Pathways & Interactions for CCER2 Gene

SuperPathways for CCER2 Gene

No Data Available

Interacting Proteins for CCER2 Gene

Gene Ontology (GO) - Biological Process for CCER2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCER2 Gene

Drugs & Compounds for CCER2 Gene

No Compound Related Data Available

Transcripts for CCER2 Gene

mRNA/cDNA for CCER2 Gene

(4) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCER2 Gene

No ASD Table

Relevant External Links for CCER2 Gene

GeneLoc Exon Structure for
CCER2
ECgene alternative splicing isoforms for
CCER2

Expression for CCER2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCER2 Gene

Protein differential expression in normal tissues from HIPED for CCER2 Gene

This gene is overexpressed in Bone marrow stromal cell (39.0) and Esophagus (30.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCER2 Gene



Protein tissue co-expression partners for CCER2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCER2 Gene:

CCER2
genes like me logo Genes that share expression patterns with CCER2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCER2 Gene

Orthologs for CCER2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CCER2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC456015 34
  • 92.73 (n)
dog
(Canis familiaris)
Mammalia LOC100685415 34
  • 83.33 (n)
cow
(Bos Taurus)
Mammalia LOC614600 34
  • 82.04 (n)
CCER2 35
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100909701 34
  • 79.17 (n)
mouse
(Mus musculus)
Mammalia Gm6537 34 35
  • 75.21 (n)
Ccer2 16
Species where no ortholog for CCER2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCER2 Gene

ENSEMBL:
Gene Tree for CCER2 (if available)
TreeFam:
Gene Tree for CCER2 (if available)

Paralogs for CCER2 Gene

(1) SIMAP similar genes for CCER2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CCER2: view

No data available for Paralogs for CCER2 Gene

Variants for CCER2 Gene

Sequence variations from dbSNP and Humsavar for CCER2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs727502784 Pathogenic 38,916,306(-) CCTGG(A/G)TATGC upstream-variant-2KB, reference, missense
rs9403 Likely benign 38,915,527(-) GTGTT(C/G)CTGAG upstream-variant-2KB, utr-variant-3-prime
rs199819134 Uncertain significance 38,915,584(+) CCCCC(A/G/T)AGGGC upstream-variant-2KB, utr-variant-3-prime
rs374281807 Uncertain significance 38,915,265(+) GAGGC(C/G)TTTGT upstream-variant-2KB, utr-variant-3-prime
rs376335678 Uncertain significance 38,916,027(+) CTGTG(C/T)GGGCC intron-variant, upstream-variant-2KB

Variation tolerance for CCER2 Gene

Gene Damage Index Score: 7.61; 82.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCER2 Gene

Human Gene Mutation Database (HGMD)
CCER2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCER2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCER2 Gene

Disorders for CCER2 Gene

Relevant External Links for CCER2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCER2

No disorders were found for CCER2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCER2 Gene

Publications for CCER2 Gene

  1. Exome Sequencing Identified CCER2 as a Novel Candidate Gene for Moyamoya Disease. (PMID: 27717682) Mukawa M. … Akagawa H. (J Stroke Cerebrovasc Dis 2017) 3 64
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  3. Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay. (PMID: 12805274) Khambata-Ford S. … Myers R.M. (Genome Res. 2003) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CCER2 Gene

Sources for CCER2 Gene

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