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Aliases for CCDC97 Gene

Aliases for CCDC97 Gene

  • Coiled-Coil Domain Containing 97 2 3 5

External Ids for CCDC97 Gene

Previous GeneCards Identifiers for CCDC97 Gene

  • GC19P046508
  • GC19P041816
  • GC19P038249

Summaries for CCDC97 Gene

GeneCards Summary for CCDC97 Gene

CCDC97 (Coiled-Coil Domain Containing 97) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC97 Gene

Genomics for CCDC97 Gene

Regulatory Elements for CCDC97 Gene

Promoters for CCDC97 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCDC97 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC97 Gene

Chromosome:
19
Start:
41,310,189 bp from pter
End:
41,324,883 bp from pter
Size:
14,695 bases
Orientation:
Plus strand

Genomic View for CCDC97 Gene

Genes around CCDC97 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC97 Gene

Proteins for CCDC97 Gene

  • Protein details for CCDC97 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96F63-CCD97_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 97
    Protein Accession:
    Q96F63
    Secondary Accessions:
    • Q658N6
    • Q96IF3

    Protein attributes for CCDC97 Gene

    Size:
    343 amino acids
    Molecular mass:
    38947 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC97 Gene

Proteomics data for CCDC97 Gene at MOPED

Post-translational modifications for CCDC97 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC97 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for CCDC97

No data available for DME Specific Peptides for CCDC97 Gene

Domains & Families for CCDC97 Gene

Protein Domains for CCDC97 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC97 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC97: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC97 Gene

Function for CCDC97 Gene

Phenotypes for CCDC97 Gene

genes like me logo Genes that share phenotypes with CCDC97: view

Animal Model Products

miRNA for CCDC97 Gene

miRTarBase miRNAs that target CCDC97

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC97 Gene

Localization for CCDC97 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC97 Gene COMPARTMENTS Subcellular localization image for CCDC97 gene
Compartment Confidence
nucleus 5
cytosol 3
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC97 Gene

Pathways & Interactions for CCDC97 Gene

SuperPathways for CCDC97 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC97 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC97 Gene

Drugs & Compounds for CCDC97 Gene

No Compound Related Data Available

Transcripts for CCDC97 Gene

Unigene Clusters for CCDC97 Gene

Coiled-coil domain containing 97:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC97 Gene

No ASD Table

Relevant External Links for CCDC97 Gene

GeneLoc Exon Structure for
CCDC97
ECgene alternative splicing isoforms for
CCDC97

Expression for CCDC97 Gene

mRNA expression in normal human tissues for CCDC97 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CCDC97 Gene

This gene is overexpressed in Blymphocyte (19.5) and Testis (11.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC97 Gene



SOURCE GeneReport for Unigene cluster for CCDC97 Gene Hs.437497

genes like me logo Genes that share expression patterns with CCDC97: view

Protein tissue co-expression partners for CCDC97 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC97 Gene

Orthologs for CCDC97 Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC97 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC97 35
  • 85.92 (n)
  • 90.03 (a)
CCDC97 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC97 35
  • 87.29 (n)
  • 90.39 (a)
CCDC97 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc97 35
  • 79.74 (n)
  • 79.06 (a)
Ccdc97 16
Ccdc97 36
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc97 35
  • 79.94 (n)
  • 79.65 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC97 36
  • 64 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CCDC97 36
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC101748852 35
  • 57.58 (n)
  • 50.76 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC97 36
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc97 35
  • 60.08 (n)
  • 56.59 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC793800 35
  • 54.58 (n)
  • 49.3 (a)
CCDC97 36
  • 40 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG7810 36
  • 26 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R10D12.13 36
  • 27 (a)
OneToOne
Species with no ortholog for CCDC97:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCDC97 Gene

ENSEMBL:
Gene Tree for CCDC97 (if available)
TreeFam:
Gene Tree for CCDC97 (if available)

Paralogs for CCDC97 Gene

No data available for Paralogs for CCDC97 Gene

Variants for CCDC97 Gene

Sequence variations from dbSNP and Humsavar for CCDC97 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs6957 -- 41,324,701(-) GAGAG(A/G)TATGA utr-variant-3-prime
rs11304 -- 41,324,838(-) ATAGA(C/T)TGGTA utr-variant-3-prime
rs1865051 -- 41,318,980(-) GCAGA(A/G)GTTGT intron-variant
rs1865052 -- 41,318,562(-) CTCTG(C/T)AGCAC intron-variant
rs3745294 -- 41,319,707(-) CCGGG(A/G)GACCC reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for CCDC97 Gene

Variant ID Type Subtype PubMed ID
nsv911769 CNV Loss 21882294

Variation tolerance for CCDC97 Gene

Residual Variation Intolerance Score: 55.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC97 Gene

HapMap Linkage Disequilibrium report
CCDC97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC97 Gene

Disorders for CCDC97 Gene

Relevant External Links for CCDC97

Genetic Association Database (GAD)
CCDC97
Human Genome Epidemiology (HuGE) Navigator
CCDC97
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC97

No disorders were found for CCDC97 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC97 Gene

Publications for CCDC97 Gene

  1. Genetic susceptibility to distinct bladder cancer subphenotypes. (PMID: 19692168) Guey L.T. … Malats N. (Eur. Urol. 2010) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  5. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3

Products for CCDC97 Gene

Sources for CCDC97 Gene

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