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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC97 Gene

protein-coding   GIFtS: 43
GCID: GC19P041816

Coiled-Coil Domain Containing 97

  Search for CCDC97
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 971 2
Coiled-Coil Domain-Containing Protein 972

External Ids:    HGNC: 282891   Entrez Gene: 903242   Ensembl: ENSG000001420397   UniProtKB: Q96F633   

Export aliases for CCDC97 gene to outside databases

Previous GC identifers: GC19P046508 GC19P038249


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC97 Gene: 
CCDC97 (coiled-coil domain containing 97) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NT_011109.16  NC_018930.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC97 gene promoter:
         E2F-4   E2F-3a   E2F-5   E2F-2   Max   E2F   E2F-1   FOXO4   ZIC2/Zic2   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC97 promoter sequence
   Search SABiosciences Chromatin IP Primers for CCDC97

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC97


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.2   Ensembl cytogenetic band:  19q13.2   HGNC cytogenetic band: 19q13.2

CCDC97 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC97 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P041816:  view genomic region     (about GC identifiers)

Start:
41,816,094 bp from pter      End:
41,830,788 bp from pter
Size:
14,695 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCD97_HUMAN, Q96F63 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 97  
Size: 343 amino acids; 38947 Da
Secondary accessions: Q658N6 Q96IF3

Explore the universe of human proteins at neXtProt for CCDC97: NX_Q96F63

Explore proteomics data for CCDC97 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96F63

  • CCDC97 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC97 Protein Expression
    REFSEQ proteins: NP_443080.1  
    ENSEMBL proteins: 
     ENSP00000269967   ENSP00000470858   ENSP00000469348  

    Human Recombinant Protein Products for CCDC97: 
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR018613 DUF2052_coiled-coil

    Graphical View of Domain Structure for InterPro Entry Q96F63

    ProtoNet protein and cluster: Q96F63


    CCDC97 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC97 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCDC97

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC97 
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    SwitchGear 3'UTR luciferase reporter plasmidCCDC97 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC97


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC97

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for CCDC97 (Q96F633 ENSP000002699674) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    APBB1O002133, ENSP000002994024I2D: score=2 STRING: ENSP00000299402
    MAPK14Q165393, ENSP000002297944I2D: score=3 STRING: ENSP00000229794
    HNRNPKENSP000003654394STRING: ENSP00000365439
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC97 (CCD97)

    Search CenterWatch for drugs/clinical trials and news about CCDC97 / CCD97

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC97 gene: 
    NM_052848.1  

    Unigene Cluster for CCDC97:

    Coiled-coil domain containing 97
    Hs.437497  [show with all ESTs]
    Unigene Representative Sequence: BC011577
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000269967(uc002oqg.3) ENST00000596882 ENST00000600918
    miRNA
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    8/35 QIAGEN miScript miRNA Assays for microRNAs that regulate CCDC97 (see all 35):
    hsa-miR-1260b hsa-miR-486-3p hsa-miR-30d hsa-miR-30a hsa-miR-149 hsa-miR-637 hsa-miR-510 hsa-miR-3175
    SwitchGear 3'UTR luciferase reporter plasmidCCDC97 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for CCDC97
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC97
    Clone
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    OriGene clones in human, mouse for CCDC97 (see all 7)
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    GenScript: all cDNA clones in your preferred vector: CCDC97 (NM_052848)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC97
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC97
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC97 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC97 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC97
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC97

    Additional mRNA sequence: 

    AK097586.1 AL833726.1 BC007575.1 BC011577.1 BC019597.1 

    10 DOTS entries:

    DT.92462604  DT.100816245  DT.100816243  DT.87017399  DT.121637306  DT.75169165  DT.97823041  DT.100816253 
    DT.92462564  DT.95101717 

    24/202 AceView cDNA sequences (see all 202):

    BC007575 BQ065907 BQ186354 AI701431 BQ057906 AI470486 BF811124 AI417216 
    AI478301 AL833726 CD360006 BQ063314 BU553866 CF264742 AW087414 BC011577 
    AA513676 BQ065911 NM_052848 CN480772 BQ279168 BU738495 BC019597 BM802063 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC97 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CAGATGTCCT
    CCDC97 Expression
    About this image


    See CCDC97 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC97

    SOURCE GeneReport for Unigene cluster: Hs.437497
        SABiosciences Custom PCR Arrays for CCDC97
    Primer
    Products:
    OriGene qPCR primer pairs and template standards for CCDC97
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    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC97
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC97
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC97

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CCDC97 gene from 8/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc971 , 5 coiled-coil domain containing 971, 5 82.1(n)1
    83.78(a)1
      7 (13.99 cM)5
    521321  NM_028771.21  NP_083047.11 
     257111065 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC976
    Uncharacterized protein
    55(a)
    1 ↔ 1
    LGf(3685735-3693025)
    African clawed frog
    (Xenopus laevis)
    Amphibia CF289743.12   -- 76.94(n)    CF289743.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC7938001 coiled-coil domain-containing protein 97-like 55.67(n)
    50.17(a)
      793800  XM_001333080.2  XP_001333116.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG78101 CG7810 47.27(n)
    36.36(a)
      34139  NM_135362.3  NP_609206.1 
    worm
    (Caenorhabditis elegans)
    Secernentea R10D12.136
    Protein R10D12.13, isoform b
    25(a)
    1 ↔ 1
    V(13962417-13963840)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT5G470901 hypothetical protein 45.37(n)
    36.56(a)
      834755  NM_124080.2  NP_568676.1 
    rice
    (Oryza sativa)
    Liliopsida Os06g01397001 hypothetical protein 49.93(n)
    37.75(a)
      4340063  NM_001063281.1  NP_001056746.2 


    ENSEMBL Gene Tree for CCDC97 (if available)
    TreeFam Gene Tree for CCDC97 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/363 SNPs in CCDC97 are shown (see all 363)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs18650531,2
    C,F,O,A,H--41814412(-) TGCCCA/GTCTCC 1 -- us2k125Minor allele frequency- G:0.26MN NS EA NA WA CSA 2851
    rs1130487181,2
    C--41814445(+) GACTAA/GTCTCA 1 -- us2k10--------
    rs1504210801,2
    --41814514(+) CCCTAC/GAATGC 1 -- us2k10--------
    rs621209671,2
    C,F--41814516(+) CTAGAA/GTGCGC 1 -- us2k12Minor allele frequency- G:0.02NA 122
    rs1891785951,2
    --41814553(+) TCTGGA/GAAGTC 1 -- us2k10--------
    rs1452691131,2
    C--41814560(+) AGTCCC/TCTTCC 1 -- us2k10--------
    rs1148249671,2
    F--41814593(+) ACAGCG/ACCCTC 1 -- us2k11Minor allele frequency- A:0.02WA 118
    rs1491338461,2
    --41814738(+) CACGTC/GTCATC 1 -- us2k10--------
    rs22176561,2
    C,F,O,H--41814897(-) CCTCAG/TAACAA 1 -- us2k119Minor allele frequency- T:0.10NA NS EA WA 2254
    rs790895681,2
    C,F--41815092(+) GAACCG/ATCCGT 1 -- us2k12Minor allele frequency- A:0.04NA 122

    HapMap Linkage Disequilibrium report for CCDC97 (41816094 - 41830788 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for CCDC97:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv911769CNV Loss21882294

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC97

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CCDC97 for disorders           About MalaCards

    CCDC97 for disorders           About GeneDecksing

    Genetic Association Database (GAD): CCDC97
    Human Genome Epidemiology (HuGE) Navigator: CCDC97 (1 document)

    Export disorders for CCDC97 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC97 gene, integrated from 9 sources (see all 13):
    (articles sorted by number of sources associating them with CCDC97)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genetic susceptibility to distinct bladder cancer sub phenotypes. (PubMed id 19692168)1, 4 Guey L.T....Malats N. (2010)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    3. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    4. A human MAP kinase interactome. (PubMed id 20936779)1 Bandyopadhyay S....Ideker T. (2010)
    5. Systematic analysis of human protein complexes identi fies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R....Peters J.M. (2010)
    6. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    7. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (2009)
    8. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
    9. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    10. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 90324 HGNC: 28289 AceView: MGC20255 Ensembl:ENSG00000142039 euGenes: HUgn90324
    ECgene: CCDC97 H-InvDB: CCDC97

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC97 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC97 gene:
    Search GeneIP for patents involving CCDC97

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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