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Aliases for CCDC96 Gene

Aliases for CCDC96 Gene

  • Coiled-Coil Domain Containing 96 2 3

External Ids for CCDC96 Gene

Summaries for CCDC96 Gene

GeneCards Summary for CCDC96 Gene

CCDC96 (Coiled-Coil Domain Containing 96) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC96 Gene

Genomics for CCDC96 Gene

Genomic Location for CCDC96 Gene

Start:
7,040,849 bp from pter
End:
7,043,001 bp from pter
Size:
2,153 bases
Orientation:
Minus strand

Genomic View for CCDC96 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC96 Gene

Regulatory Elements for CCDC96 Gene

Proteins for CCDC96 Gene

  • Protein details for CCDC96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2M329-CCD96_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 96
    Protein Accession:
    Q2M329
    Secondary Accessions:
    • Q8N2I7

    Protein attributes for CCDC96 Gene

    Size:
    555 amino acids
    Molecular mass:
    62711 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC96 Gene

Proteomics data for CCDC96 Gene at MOPED

Post-translational modifications for CCDC96 Gene

No Post-translational modifications

Other Protein References for CCDC96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC96 Gene

Domains for CCDC96 Gene

Protein Domains for CCDC96 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with CCDC96: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC96 Gene

Function for CCDC96 Gene

miRNA for CCDC96 Gene

miRTarBase miRNAs that target CCDC96

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC96 Gene

Localization for CCDC96 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC96 Gene COMPARTMENTS Subcellular localization image for CCDC96 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for CCDC96 Gene

Pathways for CCDC96 Gene

SuperPathways for CCDC96 Gene

No Data Available

Interacting Proteins for CCDC96 Gene

Gene Ontology (GO) - Biological Process for CCDC96 Gene

None

No data available for Pathways by source for CCDC96 Gene

Transcripts for CCDC96 Gene

mRNA/cDNA for CCDC96 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC96 Gene

Coiled-coil domain containing 96:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC96 Gene

No ASD Table

Relevant External Links for CCDC96 Gene

GeneLoc Exon Structure for
CCDC96
ECgene alternative splicing isoforms for
CCDC96

Expression for CCDC96 Gene

mRNA expression in normal human tissues for CCDC96 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC96 Gene

SOURCE GeneReport for Unigene cluster for CCDC96 Gene Hs.656757

genes like me logo Genes that share expressions with CCDC96: view

Orthologs for CCDC96 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC96 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC96 36
  • 98.32 (n)
  • 97.12 (a)
CCDC96 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC96 36
  • 82.37 (n)
  • 80 (a)
CCDC96 37
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC96 36
  • 83.91 (n)
  • 81.9 (a)
CCDC96 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc96 36
  • 76.74 (n)
  • 71.94 (a)
Ccdc96 16
Ccdc96 37
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC96 37
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc96 36
  • 76.67 (n)
  • 73.37 (a)
chicken
(Gallus gallus)
Aves CCDC96 36
  • 55.38 (n)
  • 40.44 (a)
CCDC96 37
  • 39 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC96 37
  • 43 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.11474 36
zebrafish
(Danio rerio)
Actinopterygii ccdc96 37
  • 35 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14252 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 40 (a)
OneToOne
Species with no ortholog for CCDC96:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC96 Gene

ENSEMBL:
Gene Tree for CCDC96 (if available)
TreeFam:
Gene Tree for CCDC96 (if available)

Paralogs for CCDC96 Gene

No data available for Paralogs for CCDC96 Gene

Variants for CCDC96 Gene

Sequence variations from dbSNP and Humsavar for CCDC96 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
VAR_026162 -

Structural Variations from Database of Genomic Variants (DGV) for CCDC96 Gene

Variant ID Type Subtype PubMed ID
esv34196 OTHER Inversion 12058347
nsv878530 CNV Loss 21882294
esv34033 CNV Loss 18971310
dgv1568e1 CNV Complex 17122850
nsv428436 CNV Gain 18775914
nsv469847 CNV Complex 16826518
nsv878531 CNV Loss 21882294
nsv878532 CNV Loss 21882294
nsv878533 CNV Loss 21882294
nsv4217 CNV Loss 18451855
esv26516 CNV Loss 19812545

Relevant External Links for CCDC96 Gene

HapMap Linkage Disequilibrium report
CCDC96

Disorders for CCDC96 Gene

No disorders were found for CCDC96 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC96 Gene

Publications for CCDC96 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Proteomic analysis of mammalian sperm cells identifies new components of the centrosome. (PMID: 25074808) Firat-Karalar E.N. … Stearns T. (J. Cell Sci. 2014) 2 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CCDC96 Gene

Sources for CCDC96 Gene

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