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Aliases for CCDC92B Gene

Aliases for CCDC92B Gene

  • Coiled-Coil Domain Containing 92B 2 3 5

External Ids for CCDC92B Gene

Summaries for CCDC92B Gene

GeneCards Summary for CCDC92B Gene

CCDC92B (Coiled-Coil Domain Containing 92B) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC92B Gene

Genomics for CCDC92B Gene

Regulatory Elements for CCDC92B Gene

Enhancers for CCDC92B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G002749 1 ENCODE 0.7 -0.4 -410 0.3 ARID4B SIN3A ZNF48 SLC30A9 ZNF143 KLF7 DEK ZNF263 ZNF202 SP3 SGSM2 ENSG00000263050 GC17P002752 CCDC92B
GH17G002751 0.4 ENCODE 0.7 -2.2 -2181 0.3 CTCF REST GC17P002752 CCDC92B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC92B on UCSC Golden Path with GeneCards custom track

Promoters for CCDC92B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090271 -238 401 ARID4B SIN3A ZNF48 SLC30A9 ZNF143 KLF7 DEK ZNF263 ZNF202 SP3

Genomic Location for CCDC92B Gene

Chromosome:
17
Start:
2,724,411 bp from pter
End:
2,749,562 bp from pter
Size:
25,152 bases
Orientation:
Minus strand

Genomic View for CCDC92B Gene

Genes around CCDC92B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC92B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC92B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC92B Gene

Proteins for CCDC92B Gene

Post-translational modifications for CCDC92B Gene

No Post-translational modifications

Other Protein References for CCDC92B Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CCDC92B Gene

Domains & Families for CCDC92B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC92B Gene

Function for CCDC92B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC92B Gene

Localization for CCDC92B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC92B Gene

Pathways & Interactions for CCDC92B Gene

SuperPathways for CCDC92B Gene

No Data Available

Interacting Proteins for CCDC92B Gene

Gene Ontology (GO) - Biological Process for CCDC92B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC92B Gene

Drugs & Compounds for CCDC92B Gene

No Compound Related Data Available

Transcripts for CCDC92B Gene

mRNA/cDNA for CCDC92B Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC92B Gene

No ASD Table

Relevant External Links for CCDC92B Gene

GeneLoc Exon Structure for
CCDC92B
ECgene alternative splicing isoforms for
CCDC92B

Expression for CCDC92B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of CCDC92B Gene:

CCDC92B
genes like me logo Genes that share expression patterns with CCDC92B: view

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC92B Gene

Orthologs for CCDC92B Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC92B Gene

Organism Taxonomy Gene Similarity Type Details
rat
(Rattus norvegicus)
Mammalia RGD1562276 34
  • 92.61 (n)
mouse
(Mus musculus)
Mammalia E130309D14Rik 34
  • 85.34 (n)
Ccdc92b 16
chicken
(Gallus gallus)
Aves LOC101751240 34
  • 75.8 (n)
Species where no ortholog for CCDC92B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC92B Gene

ENSEMBL:
Gene Tree for CCDC92B (if available)
TreeFam:
Gene Tree for CCDC92B (if available)

Paralogs for CCDC92B Gene

No data available for Paralogs for CCDC92B Gene

Variants for CCDC92B Gene

Sequence variations from dbSNP and Humsavar for CCDC92B Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000083920 -- 2,729,349(+) TTAGC(C/T)GGTGG intron-variant
rs1000194223 -- 2,747,951(+) GAAGA(C/T)TCTAT intron-variant, downstream-variant-500B
rs1000203930 -- 2,749,271(+) GCCGC(A/G/T)AGTCC upstream-variant-2KB
rs1000333422 -- 2,723,690(+) CCAGC(G/T)GGGTG utr-variant-3-prime
rs1000471006 -- 2,724,722(+) CGGGG(C/T)CTGCA reference, missense

Relevant External Links for CCDC92B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC92B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC92B Gene

Disorders for CCDC92B Gene

No disorders were found for CCDC92B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC92B Gene

Publications for CCDC92B Gene

No publications were found for CCDC92B Gene.

Products for CCDC92B Gene

Sources for CCDC92B Gene

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