Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC90B Gene

Aliases for CCDC90B Gene

  • Coiled-Coil Domain Containing 90B 2 3
  • Coiled-Coil Domain-Containing Protein 90B, Mitochondrial 3
  • MDS011 3
  • MDS025 3

External Ids for CCDC90B Gene

Summaries for CCDC90B Gene

GeneCards Summary for CCDC90B Gene

CCDC90B (Coiled-Coil Domain Containing 90B) is a Protein Coding gene. An important paralog of this gene is MCUR1.

Gene Wiki entry for CCDC90B Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC90B Gene

Genomics for CCDC90B Gene

Genomic Location for CCDC90B Gene

Start:
83,259,093 bp from pter
End:
83,286,407 bp from pter
Size:
27,315 bases
Orientation:
Minus strand

Genomic View for CCDC90B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC90B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC90B Gene

Regulatory Elements for CCDC90B Gene

Proteins for CCDC90B Gene

  • Protein details for CCDC90B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZT6-CC90B_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 90B, mitochondrial
    Protein Accession:
    Q9GZT6
    Secondary Accessions:
    • A8K8I4
    • B3KP87
    • B4E3L2
    • Q3B781
    • Q9GZU6

    Protein attributes for CCDC90B Gene

    Size:
    254 amino acids
    Molecular mass:
    29506 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC90B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC90B Gene

Proteomics data for CCDC90B Gene at MOPED

Post-translational modifications for CCDC90B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC90B Gene

Domains for CCDC90B Gene

Protein Domains for CCDC90B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC90B Gene

Graphical View of Domain Structure for InterPro Entry

Q9GZT6

UniProtKB/Swiss-Prot:

CC90B_HUMAN
Family:
  • Belongs to the CCDC90 family.:
    • Q9GZT6
genes like me logo Genes that share domains with CCDC90B: view

No data available for Gene Families for CCDC90B Gene

Function for CCDC90B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC90B Gene

Localization for CCDC90B Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC90B Gene

Mitochondrion. Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC90B Gene COMPARTMENTS Subcellular localization image for CCDC90B gene
Compartment Confidence
mitochondrion 5
cytosol 1
endoplasmic reticulum 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CCDC90B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC90B: view

Pathways for CCDC90B Gene

SuperPathways for CCDC90B Gene

No Data Available

Interacting Proteins for CCDC90B Gene

Gene Ontology (GO) - Biological Process for CCDC90B Gene

None

No data available for Pathways by source for CCDC90B Gene

Transcripts for CCDC90B Gene

Unigene Clusters for CCDC90B Gene

Coiled-coil domain containing 90B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC90B Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d · 2e · 2f ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: - - - - - - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5: - - - -
SP6: - - - - - -
SP7: - - - - -
SP8: - - - -
SP9: - -
SP10: - - - - -
SP11: - - -

Relevant External Links for CCDC90B Gene

GeneLoc Exon Structure for
CCDC90B
ECgene alternative splicing isoforms for
CCDC90B

Expression for CCDC90B Gene

mRNA expression in normal human tissues for CCDC90B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC90B Gene

SOURCE GeneReport for Unigene cluster for CCDC90B Gene Hs.368866

genes like me logo Genes that share expressions with CCDC90B: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC90B Gene

Orthologs for CCDC90B Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC90B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC90B 35
  • 99.74 (n)
  • 99.21 (a)
CCDC90B 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC90B 35
  • 90.64 (n)
  • 88.09 (a)
CCDC90B 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC90B 35
  • 88.06 (n)
  • 86.22 (a)
CCDC90B 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc90b 35
  • 85.96 (n)
  • 87.01 (a)
Ccdc90b 16
Ccdc90b 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC90B 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC90B 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc90b 35
  • 85.43 (n)
  • 84.65 (a)
chicken
(Gallus gallus)
Aves CCDC90B 35
  • 78.03 (n)
  • 84.33 (a)
CCDC90B 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC90B 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc90b 35
  • 65.48 (n)
  • 68.37 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.494 35
zebrafish
(Danio rerio)
Actinopterygii ccdc90b 35
  • 63.56 (n)
  • 61.13 (a)
ccdc90b 36
  • 58 (a)
OneToOne
Species with no ortholog for CCDC90B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC90B Gene

ENSEMBL:
Gene Tree for CCDC90B (if available)
TreeFam:
Gene Tree for CCDC90B (if available)

Paralogs for CCDC90B Gene

Paralogs for CCDC90B Gene

Selected SIMAP similar genes for CCDC90B Gene using alignment to 11 proteins:

Pseudogenes.org Pseudogenes for CCDC90B Gene

genes like me logo Genes that share paralogs with CCDC90B: view

Variants for CCDC90B Gene

Sequence variations from dbSNP and Humsavar for CCDC90B Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs8789 -- 83,261,962(+) AACAC(C/T)GAAGC synonymous-codon, reference, missense
rs99146 -- 83,265,832(+) AATTA(C/G)ATGAC intron-variant
rs476717 -- 83,279,235(+) GAGAT(C/T)GCGCC intron-variant
rs477560 -- 83,267,216(-) ctgca(A/G)tcctt intron-variant
rs488662 -- 83,272,624(-) TGTGC(C/T)CTAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC90B Gene

Variant ID Type Subtype PubMed ID
esv33531 CNV Loss 17666407

Relevant External Links for CCDC90B Gene

HapMap Linkage Disequilibrium report
CCDC90B
Human Gene Mutation Database (HGMD)
CCDC90B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC90B Gene

Disorders for CCDC90B Gene

Relevant External Links for CCDC90B

Genetic Association Database (GAD)
CCDC90B
Human Genome Epidemiology (HuGE) Navigator
CCDC90B
genes like me logo Genes that share disorders with CCDC90B: view

No data available for UniProtKB/Swiss-Prot for CCDC90B Gene

Publications for CCDC90B Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PMID: 11256614) Simpson J.C. … Wiemann S. (EMBO Rep. 2000) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3

Products for CCDC90B Gene

  • antibodies-online peptides for CCDC90B
  • antibodies-online antibodies for CCDC90B
  • antibodies-online kits for CCDC90B

Sources for CCDC90B Gene

Back to Top

Content