Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC90AP1 Gene

Aliases for CCDC90AP1 Gene

  • Coiled-Coil Domain Containing 90A Pseudogene 1 2 3
  • Chromosome 17 Open Reading Frame 23 2
  • Uncharacterized Protein LOC53383 3
  • RP11-667K14.8 5
  • C17orf23 3

External Ids for CCDC90AP1 Gene

Previous HGNC Symbols for CCDC90AP1 Gene

  • C17orf23

Previous GeneCards Identifiers for CCDC90AP1 Gene

  • GC17U901473
  • GC17M002030

Summaries for CCDC90AP1 Gene

GeneCards Summary for CCDC90AP1 Gene

CCDC90AP1 (Coiled-Coil Domain Containing 90A Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC90AP1 Gene

Genomics for CCDC90AP1 Gene

Regulatory Elements for CCDC90AP1 Gene

Enhancers for CCDC90AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F002121 1.7 FANTOM5 Ensembl ENCODE 0.8 +4.6 4568 4.1 PKNOX1 ARID4B FEZF1 ZNF48 YY1 GLIS2 KLF7 FOS ZNF263 SP3 LOC105371487 ENSG00000236457 SRR SERPINF2 CCDC90AP1 ENSG00000279340 GC17M002124 GC17M002125
GH17F002136 1.5 FANTOM5 Ensembl ENCODE 0.4 -9.8 -9847 3.4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 FEZF1 YBX1 ZNF2 YY1 HIC1 SERPINF1 TLCD2 LOC105371487 OVCA2 SGSM2 TSR1 SCARF1 SRR WDR81
GH17F002137 0.6 ENCODE 0.4 -8.1 -8097 0.0 ZNF639 MTA2 ZEB2 ARID1B JUND ATF3 ADNP GLIS1 PBX2 KDM1A CCDC90AP1 PIR52499 GC17M002152
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC90AP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC90AP1 Gene

Chromosome:
17
Start:
2,127,428 bp from pter
End:
2,128,278 bp from pter
Size:
851 bases
Orientation:
Minus strand

Genomic View for CCDC90AP1 Gene

Genes around CCDC90AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC90AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC90AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC90AP1 Gene

Proteins for CCDC90AP1 Gene

Post-translational modifications for CCDC90AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC90AP1 Gene

Domains & Families for CCDC90AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC90AP1 Gene

Function for CCDC90AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC90AP1 Gene

Localization for CCDC90AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC90AP1 Gene

Pathways & Interactions for CCDC90AP1 Gene

SuperPathways for CCDC90AP1 Gene

No Data Available

Interacting Proteins for CCDC90AP1 Gene

Gene Ontology (GO) - Biological Process for CCDC90AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC90AP1 Gene

Transcripts for CCDC90AP1 Gene

mRNA/cDNA for CCDC90AP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC90AP1 Gene

No ASD Table

Relevant External Links for CCDC90AP1 Gene

GeneLoc Exon Structure for
CCDC90AP1
ECgene alternative splicing isoforms for
CCDC90AP1

Expression for CCDC90AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC90AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC90AP1 Gene:

CCDC90AP1
genes like me logo Genes that share expression patterns with CCDC90AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC90AP1 Gene

Orthologs for CCDC90AP1 Gene

Evolution for CCDC90AP1 Gene

ENSEMBL:
Gene Tree for CCDC90AP1 (if available)
TreeFam:
Gene Tree for CCDC90AP1 (if available)

No data available for Orthologs for CCDC90AP1 Gene

Paralogs for CCDC90AP1 Gene

No data available for Paralogs for CCDC90AP1 Gene

Variants for CCDC90AP1 Gene

Relevant External Links for CCDC90AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC90AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC90AP1 Gene

Disorders for CCDC90AP1 Gene

No disorders were found for CCDC90AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC90AP1 Gene

Publications for CCDC90AP1 Gene

No publications were found for CCDC90AP1 Gene.

Products for CCDC90AP1 Gene

Sources for CCDC90AP1 Gene

Content
Loading form....