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Aliases for CCDC9 Gene

Aliases for CCDC9 Gene

  • Coiled-Coil Domain Containing 9 2 3
  • FAM175A 6
  • ABRAXAS 6
  • CCDC98 6
  • ABRA1 6

External Ids for CCDC9 Gene

Previous GeneCards Identifiers for CCDC9 Gene

  • GC00U914334
  • GC19P052452
  • GC19P052453
  • GC19P047759
  • GC19P044183

Summaries for CCDC9 Gene

GeneCards Summary for CCDC9 Gene

CCDC9 (Coiled-Coil Domain Containing 9) is a Protein Coding gene. An important paralog of this gene is C15orf52.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC9 Gene

Genomics for CCDC9 Gene

Regulatory Elements for CCDC9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC9 Gene

Start:
47,255,980 bp from pter
End:
47,273,835 bp from pter
Size:
17,856 bases
Orientation:
Plus strand

Genomic View for CCDC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC9 Gene

Proteins for CCDC9 Gene

  • Protein details for CCDC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3X0-CCDC9_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 9
    Protein Accession:
    Q9Y3X0
    Secondary Accessions:

    Protein attributes for CCDC9 Gene

    Size:
    531 amino acids
    Molecular mass:
    59703 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC9 Gene

Proteomics data for CCDC9 Gene at MOPED

Post-translational modifications for CCDC9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC9 Gene

Antibody Products

No data available for DME Specific Peptides for CCDC9 Gene

Domains for CCDC9 Gene

Protein Domains for CCDC9 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC9: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC9 Gene

Function for CCDC9 Gene

Gene Ontology (GO) - Molecular Function for CCDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with CCDC9: view

Phenotypes for CCDC9 Gene

GenomeRNAi human phenotypes for CCDC9:
genes like me logo Genes that share phenotypes with CCDC9: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC9

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC9 Gene

Localization for CCDC9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC9 Gene COMPARTMENTS Subcellular localization image for CCDC9 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC9 Gene

Pathways for CCDC9 Gene

SuperPathways for CCDC9 Gene

No Data Available

Interacting Proteins for CCDC9 Gene

Gene Ontology (GO) - Biological Process for CCDC9 Gene

None

No data available for Pathways by source for CCDC9 Gene

Transcripts for CCDC9 Gene

Unigene Clusters for CCDC9 Gene

Coiled-coil domain containing 9:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC9

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC9 Gene

No ASD Table

Relevant External Links for CCDC9 Gene

GeneLoc Exon Structure for
CCDC9
ECgene alternative splicing isoforms for
CCDC9

Expression for CCDC9 Gene

mRNA expression in normal human tissues for CCDC9 Gene

Protein differential expression in normal tissues for CCDC9 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (14.6) and Pancreas (11.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC9 Gene

SOURCE GeneReport for Unigene cluster for CCDC9 Gene Hs.227782

genes like me logo Genes that share expressions with CCDC9: view

Expression partners for CCDC9 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC9 Gene

Orthologs for CCDC9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC9 35
  • 83.4 (n)
  • 81.42 (a)
CCDC9 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC9 35
  • 83.66 (n)
  • 83.91 (a)
-- 36
  • 65 (a)
OneToMany
-- 36
  • 81 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ccdc9 35
  • 80.23 (n)
  • 81.2 (a)
Ccdc9 16
Ccdc9 36
  • 68 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CCDC9 35
  • 99.18 (n)
  • 98.87 (a)
CCDC9 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC9 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC9 36
  • 46 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18808 35
zebrafish
(Danio rerio)
Actinopterygii ccdc9 35
  • 59.23 (n)
  • 65.16 (a)
ccdc9 36
  • 36 (a)
OneToOne
Species with no ortholog for CCDC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC9 Gene

ENSEMBL:
Gene Tree for CCDC9 (if available)
TreeFam:
Gene Tree for CCDC9 (if available)

Paralogs for CCDC9 Gene

Paralogs for CCDC9 Gene

genes like me logo Genes that share paralogs with CCDC9: view

Variants for CCDC9 Gene

Sequence variations from dbSNP and Humsavar for CCDC9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs871966 -- 47,263,228(+) GATTG(C/T)GGCAA intron-variant
rs883030 -- 47,267,681(+) TGCCC(A/C)CTCCA intron-variant
rs884536 -- 47,268,301(-) TACTG(C/G)TATTT intron-variant
rs884537 -- 47,268,242(-) CATGA(C/T)GATGA intron-variant
rs888835 -- 47,271,734(-) cgcgc(A/G)cacac utr-variant-3-prime, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC9 Gene

Variant ID Type Subtype PubMed ID
nsv833852 CNV Loss 17160897
nsv912196 CNV Loss 21882294
dgv3963n71 CNV Loss 21882294
nsv912199 CNV Loss 21882294

Relevant External Links for CCDC9 Gene

HapMap Linkage Disequilibrium report
CCDC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC9 Gene

Disorders for CCDC9 Gene

No disorders were found for CCDC9 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CCDC9 Gene

Publications for CCDC9 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  4. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3
  5. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PMID: 21044950) Lee O.H. … Songyang Z. (Mol. Cell Proteomics 2011) 3

Products for CCDC9 Gene

Sources for CCDC9 Gene

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