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Aliases for CCDC9 Gene

Aliases for CCDC9 Gene

  • Coiled-Coil Domain Containing 9 2 3

External Ids for CCDC9 Gene

Previous GeneCards Identifiers for CCDC9 Gene

  • GC00U914334
  • GC19P052452
  • GC19P052453
  • GC19P047759
  • GC19P044183

Summaries for CCDC9 Gene

GeneCards Summary for CCDC9 Gene

CCDC9 (Coiled-Coil Domain Containing 9) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding. An important paralog of this gene is C15orf52.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC9 Gene

Genomics for CCDC9 Gene

Regulatory Elements for CCDC9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC9 Gene

47,255,980 bp from pter
47,271,953 bp from pter
15,974 bases
Plus strand

Genomic View for CCDC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC9 Gene

Proteins for CCDC9 Gene

  • Protein details for CCDC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 9
    Protein Accession:

    Protein attributes for CCDC9 Gene

    531 amino acids
    Molecular mass:
    59703 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC9 Gene

Proteomics data for CCDC9 Gene at MOPED

Post-translational modifications for CCDC9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC9 Gene

No data available for DME Specific Peptides for CCDC9 Gene

Domains & Families for CCDC9 Gene

Protein Domains for CCDC9 Gene


Suggested Antigen Peptide Sequences for CCDC9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC9: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC9 Gene

Function for CCDC9 Gene

Gene Ontology (GO) - Molecular Function for CCDC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with CCDC9: view
genes like me logo Genes that share phenotypes with CCDC9: view

Animal Model Products

miRNA for CCDC9 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC9

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC9 Gene

Localization for CCDC9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC9 Gene

Pathways & Interactions for CCDC9 Gene

SuperPathways for CCDC9 Gene

No Data Available

Interacting Proteins for CCDC9 Gene

Gene Ontology (GO) - Biological Process for CCDC9 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC9 Gene

Drugs & Compounds for CCDC9 Gene

No Compound Related Data Available

Transcripts for CCDC9 Gene

Unigene Clusters for CCDC9 Gene

Coiled-coil domain containing 9:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC9

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC9 Gene

No ASD Table

Relevant External Links for CCDC9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC9 Gene

mRNA expression in normal human tissues for CCDC9 Gene

Protein differential expression in normal tissues from HIPED for CCDC9 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (14.6) and Pancreas (11.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC9 Gene

SOURCE GeneReport for Unigene cluster for CCDC9 Gene Hs.227782

genes like me logo Genes that share expression patterns with CCDC9: view

Protein tissue co-expression partners for CCDC9 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC9 Gene

Orthologs for CCDC9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC9 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CCDC9 35
  • 83.4 (n)
  • 81.42 (a)
CCDC9 36
  • 83 (a)
(Canis familiaris)
Mammalia CCDC9 35
  • 83.66 (n)
  • 83.91 (a)
-- 36
  • 65 (a)
-- 36
  • 81 (a)
(Mus musculus)
Mammalia Ccdc9 35
  • 80.23 (n)
  • 81.2 (a)
Ccdc9 16
Ccdc9 36
  • 68 (a)
(Pan troglodytes)
Mammalia CCDC9 35
  • 99.18 (n)
  • 98.87 (a)
CCDC9 36
  • 99 (a)
(Monodelphis domestica)
Mammalia CCDC9 36
  • 62 (a)
(Anolis carolinensis)
Reptilia CCDC9 36
  • 46 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.18808 35
(Danio rerio)
Actinopterygii ccdc9 35
  • 59.23 (n)
  • 65.16 (a)
ccdc9 36
  • 36 (a)
Species with no ortholog for CCDC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC9 Gene

Gene Tree for CCDC9 (if available)
Gene Tree for CCDC9 (if available)

Paralogs for CCDC9 Gene

Paralogs for CCDC9 Gene

genes like me logo Genes that share paralogs with CCDC9: view

Variants for CCDC9 Gene

Sequence variations from dbSNP and Humsavar for CCDC9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs871966 -- 47,263,228(+) GATTG(C/T)GGCAA intron-variant
rs883030 -- 47,267,681(+) TGCCC(A/C)CTCCA intron-variant
rs884536 -- 47,268,301(-) TACTG(C/G)TATTT intron-variant
rs884537 -- 47,268,242(-) CATGA(C/T)GATGA intron-variant
rs888835 -- 47,271,734(-) cgcgc(A/G)cacac utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CCDC9 Gene

Variant ID Type Subtype PubMed ID
nsv833852 CNV Loss 17160897
nsv912196 CNV Loss 21882294
dgv3963n71 CNV Loss 21882294
nsv912199 CNV Loss 21882294

Variation tolerance for CCDC9 Gene

Residual Variation Intolerance Score: 90.59% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.27; 81.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC9 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC9 Gene

Disorders for CCDC9 Gene

Relevant External Links for CCDC9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with CCDC9: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC9 Gene

Publications for CCDC9 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 67
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67
  5. The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. (PMID: 23084401) Singh G. … Moore M.J. (Cell 2012) 67

Products for CCDC9 Gene

Sources for CCDC9 Gene

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