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Aliases for CCDC87 Gene

Aliases for CCDC87 Gene

  • Coiled-Coil Domain Containing 87 2 3

External Ids for CCDC87 Gene

Previous GeneCards Identifiers for CCDC87 Gene

  • GC11M066115
  • GC11M066357
  • GC11M062685

Summaries for CCDC87 Gene

GeneCards Summary for CCDC87 Gene

CCDC87 (Coiled-Coil Domain Containing 87) is a Protein Coding gene. GO annotations related to this gene include microtubule binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC87 Gene

Genomics for CCDC87 Gene

Regulatory Elements for CCDC87 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC87 Gene

Start:
66,590,169 bp from pter
End:
66,593,083 bp from pter
Size:
2,915 bases
Orientation:
Minus strand

Genomic View for CCDC87 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC87 Gene

Proteins for CCDC87 Gene

  • Protein details for CCDC87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NVE4-CCD87_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 87
    Protein Accession:
    Q9NVE4
    Secondary Accessions:
    • Q8NE76

    Protein attributes for CCDC87 Gene

    Size:
    849 amino acids
    Molecular mass:
    96402 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC87 Gene

Proteomics data for CCDC87 Gene at MOPED

Post-translational modifications for CCDC87 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC87 Gene

Domains for CCDC87 Gene

Protein Domains for CCDC87 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC87 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC87: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC87 Gene

Function for CCDC87 Gene

Gene Ontology (GO) - Molecular Function for CCDC87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008017 microtubule binding IEA --
genes like me logo Genes that share ontologies with CCDC87: view

Phenotypes for CCDC87 Gene

GenomeRNAi human phenotypes for CCDC87:
genes like me logo Genes that share phenotypes with CCDC87: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC87

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC87 Gene

Localization for CCDC87 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC87 Gene COMPARTMENTS Subcellular localization image for CCDC87 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC87 Gene

Pathways for CCDC87 Gene

SuperPathways for CCDC87 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000226 microtubule cytoskeleton organization IEA --
GO:0000910 cytokinesis IEA --
genes like me logo Genes that share ontologies with CCDC87: view

No data available for Pathways by source for CCDC87 Gene

Transcripts for CCDC87 Gene

mRNA/cDNA for CCDC87 Gene

(30) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC87 Gene

Coiled-coil domain containing 87:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC87

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC87 Gene

No ASD Table

Relevant External Links for CCDC87 Gene

GeneLoc Exon Structure for
CCDC87
ECgene alternative splicing isoforms for
CCDC87

Expression for CCDC87 Gene

mRNA expression in normal human tissues for CCDC87 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CCDC87 Gene

SOURCE GeneReport for Unigene cluster for CCDC87 Gene Hs.121072

genes like me logo Genes that share expressions with CCDC87: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC87 Gene

Orthologs for CCDC87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC87 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC87 35
  • 99.25 (n)
  • 99.06 (a)
CCDC87 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC87 35
  • 78.65 (n)
  • 66.55 (a)
CCDC87 36
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC87 35
  • 80.66 (n)
  • 71.11 (a)
CCDC87 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc87 35
  • 73.31 (n)
  • 61.22 (a)
Ccdc87 16
Ccdc87 36
  • 60 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC87 36
  • 47 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100911631 35
  • 74.09 (n)
  • 61.13 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC87 36
  • 32 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486794 35
  • 43.18 (n)
  • 33.16 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc87 36
  • 21 (a)
OneToOne
Species with no ortholog for CCDC87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC87 Gene

ENSEMBL:
Gene Tree for CCDC87 (if available)
TreeFam:
Gene Tree for CCDC87 (if available)

Paralogs for CCDC87 Gene

No data available for Paralogs for CCDC87 Gene

Variants for CCDC87 Gene

Sequence variations from dbSNP and Humsavar for CCDC87 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs486584 -- 66,590,655(-) CTCCT(A/C/G/T)GAGGA synonymous-codon, reference
rs62000967 -- 66,590,711(+) GCTTC(A/G)GACCT reference, stop-gained
rs62000969 -- 66,590,803(+) ACTCT(A/C)GTCTC missense, reference
rs77939854 -- 66,589,935(+) CAGCA(C/T)GAAAC downstream-variant-500B
rs78750124 -- 66,590,539(+) GGCGA(A/C)CCCGC missense, reference

Structural Variations from Database of Genomic Variants (DGV) for CCDC87 Gene

Variant ID Type Subtype PubMed ID
dgv1187n71 CNV Loss 21882294
nsv522277 CNV Loss 19592680

Relevant External Links for CCDC87 Gene

HapMap Linkage Disequilibrium report
CCDC87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC87 Gene

Disorders for CCDC87 Gene

No disorders were found for CCDC87 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC87 Gene

Publications for CCDC87 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  4. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. (PMID: 17643375) Jeronimo C. … Coulombe B. (Mol. Cell 2007) 3
  5. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3

Products for CCDC87 Gene

Sources for CCDC87 Gene

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