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Aliases for CCDC82 Gene

Aliases for CCDC82 Gene

  • Coiled-Coil Domain Containing 82 2 3
  • Coiled-Coil Domain-Containing Protein 82 3
  • HSPC048 3

External Ids for CCDC82 Gene

Previous GeneCards Identifiers for CCDC82 Gene

  • GC11M095726
  • GC11M096085
  • GC11M092152

Summaries for CCDC82 Gene

GeneCards Summary for CCDC82 Gene

CCDC82 (Coiled-Coil Domain Containing 82) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC82 Gene

Genomics for CCDC82 Gene

Regulatory Elements for CCDC82 Gene

Genomic Location for CCDC82 Gene

Start:
96,352,765 bp from pter
End:
96,389,923 bp from pter
Size:
37,159 bases
Orientation:
Minus strand

Genomic View for CCDC82 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC82 Gene

Proteins for CCDC82 Gene

  • Protein details for CCDC82 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4S0-CCD82_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 82
    Protein Accession:
    Q8N4S0
    Secondary Accessions:
    • B3KPU7
    • Q8WV71
    • Q9H2Q5
    • Q9H5E3

    Protein attributes for CCDC82 Gene

    Size:
    544 amino acids
    Molecular mass:
    64002 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15683.1; Type=Frameshift; Positions=527; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC82 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC82 Gene

Proteomics data for CCDC82 Gene at MOPED

Post-translational modifications for CCDC82 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC82 Gene

No data available for DME Specific Peptides for CCDC82 Gene

Domains for CCDC82 Gene

Protein Domains for CCDC82 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC82 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC82: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC82 Gene

Function for CCDC82 Gene

Phenotypes for CCDC82 Gene

GenomeRNAi human phenotypes for CCDC82:
genes like me logo Genes that share phenotypes with CCDC82: view

miRNA for CCDC82 Gene

miRTarBase miRNAs that target CCDC82

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC82 Gene

Localization for CCDC82 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC82 Gene COMPARTMENTS Subcellular localization image for CCDC82 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC82 Gene

Pathways for CCDC82 Gene

SuperPathways for CCDC82 Gene

No Data Available

Interacting Proteins for CCDC82 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000278520%0d%0a9606.ENSP00000256474%0d%0a
Selected Interacting proteins: ENSP00000278520 Q8N4S0-CCD82_HUMAN for CCDC82 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for CCDC82 Gene

None

No data available for Pathways by source for CCDC82 Gene

Transcripts for CCDC82 Gene

Unigene Clusters for CCDC82 Gene

Coiled-coil domain containing 82:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC82 Gene

No ASD Table

Relevant External Links for CCDC82 Gene

GeneLoc Exon Structure for
CCDC82
ECgene alternative splicing isoforms for
CCDC82

Expression for CCDC82 Gene

mRNA expression in normal human tissues for CCDC82 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC82 Gene

SOURCE GeneReport for Unigene cluster for CCDC82 Gene Hs.525088

genes like me logo Genes that share expressions with CCDC82: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC82 Gene

Orthologs for CCDC82 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC82 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC82 35
  • 99.45 (n)
  • 99.26 (a)
CCDC82 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC82 35
  • 86.09 (n)
  • 77.78 (a)
CCDC82 36
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC82 35
  • 89.21 (n)
  • 85.77 (a)
CCDC82 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc82 35
  • 80.62 (n)
  • 73.06 (a)
Ccdc82 16
Ccdc82 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC82 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC82 36
  • 48 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc82 35
  • 79.96 (n)
  • 70.62 (a)
chicken
(Gallus gallus)
Aves CCDC82 35
  • 57.96 (n)
  • 47.75 (a)
CCDC82 36
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC82 36
  • 39 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc82 35
  • 54.92 (n)
  • 45.31 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc82 36
  • 32 (a)
OneToOne
Species with no ortholog for CCDC82:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC82 Gene

ENSEMBL:
Gene Tree for CCDC82 (if available)
TreeFam:
Gene Tree for CCDC82 (if available)

Paralogs for CCDC82 Gene

No data available for Paralogs for CCDC82 Gene

Variants for CCDC82 Gene

Sequence variations from dbSNP and Humsavar for CCDC82 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs483930 -- 96,355,592(-) gaatt(G/T)gggag intron-variant
rs549010 -- 96,363,809(-) GGTAA(C/T)TCTTA intron-variant
rs613663 -- 96,387,710(+) AAAAA(A/T)AACGA intron-variant, upstream-variant-2KB
rs1784803 -- 96,352,361(+) gccat(G/T)gcacg downstream-variant-500B
rs1940572 -- 96,380,484(-) TAAAT(A/G)TGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC82 Gene

Variant ID Type Subtype PubMed ID
nsv898191 CNV Gain 21882294

Relevant External Links for CCDC82 Gene

HapMap Linkage Disequilibrium report
CCDC82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC82 Gene

Disorders for CCDC82 Gene

No disorders were found for CCDC82 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC82 Gene

Publications for CCDC82 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4
  5. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3

Products for CCDC82 Gene

Sources for CCDC82 Gene

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