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Aliases for CCDC71L Gene

Aliases for CCDC71L Gene

  • Coiled-Coil Domain Containing 71-Like 2 3
  • C7orf74 3 4
  • Coiled-Coil Domain-Containing Protein 71L 3
  • Chromosome 7 Open Reading Frame 74 2

External Ids for CCDC71L Gene

Previous HGNC Symbols for CCDC71L Gene

  • C7orf74

Previous GeneCards Identifiers for CCDC71L Gene

  • GC07M106298

Summaries for CCDC71L Gene

GeneCards Summary for CCDC71L Gene

CCDC71L (Coiled-Coil Domain Containing 71-Like) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC71L Gene

Genomics for CCDC71L Gene

Genomic Location for CCDC71L Gene

Start:
106,656,765 bp from pter
End:
106,661,188 bp from pter
Size:
4,424 bases
Orientation:
Minus strand

Genomic View for CCDC71L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC71L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC71L Gene

No data available for Regulatory Elements for CCDC71L Gene

Proteins for CCDC71L Gene

  • Protein details for CCDC71L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9Z2-CC71L_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 71L
    Protein Accession:
    Q8N9Z2
    Secondary Accessions:
    • Q7Z756

    Protein attributes for CCDC71L Gene

    Size:
    235 amino acids
    Molecular mass:
    26261 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH13906.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=EAL24398.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC71L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC71L Gene

Proteomics data for CCDC71L Gene at MOPED

Post-translational modifications for CCDC71L Gene

  • Ubiquitination at Lys54, Lys61, and Lys96
  • Modification sites at PhosphoSitePlus

Other Protein References for CCDC71L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC71L Gene

Domains for CCDC71L Gene

Protein Domains for CCDC71L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC71L: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC71L Gene

Function for CCDC71L Gene

Phenotypes for CCDC71L Gene

GenomeRNAi human phenotypes for CCDC71L:
genes like me logo Genes that share phenotypes with CCDC71L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC71L Gene

Localization for CCDC71L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC71L Gene

Pathways for CCDC71L Gene

SuperPathways for CCDC71L Gene

No Data Available

Interacting Proteins for CCDC71L Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000430897%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000430897 for CCDC71L Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for CCDC71L Gene

None

No data available for Pathways by source for CCDC71L Gene

Transcripts for CCDC71L Gene

mRNA/cDNA for CCDC71L Gene

(169) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC71L Gene

Coiled-coil domain containing 71-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC71L Gene

No ASD Table

Relevant External Links for CCDC71L Gene

GeneLoc Exon Structure for
CCDC71L
ECgene alternative splicing isoforms for
CCDC71L

Expression for CCDC71L Gene

mRNA expression in normal human tissues for CCDC71L Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC71L Gene

SOURCE GeneReport for Unigene cluster for CCDC71L Gene Hs.29692

genes like me logo Genes that share expressions with CCDC71L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC71L Gene

Orthologs for CCDC71L Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC71L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC71L 35
  • 99.13 (n)
  • 99.13 (a)
CCDC71L 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC71L 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc71l 35
  • 80.07 (n)
  • 74.02 (a)
Ccdc71l 16
Ccdc71l 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC71L 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc71l 35
  • 82.34 (n)
  • 76.24 (a)
chicken
(Gallus gallus)
Aves CCDC71L 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC71L 36
  • 48 (a)
OneToOne
Species with no ortholog for CCDC71L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC71L Gene

ENSEMBL:
Gene Tree for CCDC71L (if available)
TreeFam:
Gene Tree for CCDC71L (if available)

Paralogs for CCDC71L Gene

No data available for Paralogs for CCDC71L Gene

Variants for CCDC71L Gene

Sequence variations from dbSNP and Humsavar for CCDC71L Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs342182 -- 106,662,245(+) TCTCC(C/T)GACAC upstream-variant-2KB
rs2190093 -- 106,658,958(+) AACTG(A/G)TGAAT utr-variant-3-prime
rs2286148 -- 106,659,332(+) ACAAT(A/T)TATTC utr-variant-3-prime
rs2286149 -- 106,659,346(+) TTTTT(C/T)AATCA utr-variant-3-prime
rs3750125 -- 106,657,840(+) GTGAG(C/T)TCAAG utr-variant-3-prime

Relevant External Links for CCDC71L Gene

HapMap Linkage Disequilibrium report
CCDC71L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC71L Gene

Disorders for CCDC71L Gene

No disorders were found for CCDC71L Gene.

No data available for UniProtKB/Swiss-Prot for CCDC71L Gene

Publications for CCDC71L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for CCDC71L Gene

Sources for CCDC71L Gene

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