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Aliases for CCDC71 Gene

Aliases for CCDC71 Gene

  • Coiled-Coil Domain Containing 71 2 3
  • Coiled-Coil Domain-Containing Protein 71 3
  • 2600016J21Rik 3

External Ids for CCDC71 Gene

Previous GeneCards Identifiers for CCDC71 Gene

  • GC03M049174

Summaries for CCDC71 Gene

GeneCards Summary for CCDC71 Gene

CCDC71 (Coiled-Coil Domain Containing 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC71 Gene

Genomics for CCDC71 Gene

Regulatory Elements for CCDC71 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC71 Gene

Start:
49,162,535 bp from pter
End:
49,166,352 bp from pter
Size:
3,818 bases
Orientation:
Minus strand

Genomic View for CCDC71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC71 Gene

Proteins for CCDC71 Gene

  • Protein details for CCDC71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IV32-CCD71_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 71
    Protein Accession:
    Q8IV32
    Secondary Accessions:
    • Q6IPE2
    • Q9H8H4
    • Q9H9F1

    Protein attributes for CCDC71 Gene

    Size:
    467 amino acids
    Molecular mass:
    49648 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14642.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for CCDC71 Gene

Proteomics data for CCDC71 Gene at MOPED

Post-translational modifications for CCDC71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC71 Gene

Domains for CCDC71 Gene

Protein Domains for CCDC71 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC71 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC71: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC71 Gene

Function for CCDC71 Gene

Animal Model Products

miRNA for CCDC71 Gene

miRTarBase miRNAs that target CCDC71

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC71 Gene

Localization for CCDC71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC71 Gene COMPARTMENTS Subcellular localization image for CCDC71 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC71 Gene

Pathways for CCDC71 Gene

SuperPathways for CCDC71 Gene

No Data Available

Interacting Proteins for CCDC71 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000319006%0d%0a9606.ENSP00000355778%0d%0a9606.ENSP00000263360%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000319006 Q8IV32-CCD71_HUMAN for CCDC71 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for CCDC71 Gene

None

No data available for Pathways by source for CCDC71 Gene

Transcripts for CCDC71 Gene

mRNA/cDNA for CCDC71 Gene

(46) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC71 Gene

Coiled-coil domain containing 71:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC71

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC71 Gene

No ASD Table

Relevant External Links for CCDC71 Gene

GeneLoc Exon Structure for
CCDC71
ECgene alternative splicing isoforms for
CCDC71

Expression for CCDC71 Gene

mRNA expression in normal human tissues for CCDC71 Gene

Protein differential expression in normal tissues for CCDC71 Gene

This gene is overexpressed in Saliva (27.1), Placenta (15.7), Esophagus (11.3), and Frontal cortex (8.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC71 Gene

SOURCE GeneReport for Unigene cluster for CCDC71 Gene Hs.211472

genes like me logo Genes that share expressions with CCDC71: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for CCDC71 Gene

Orthologs for CCDC71 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC71 35
  • 96.94 (n)
  • 96.29 (a)
CCDC71 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc71 16
Ccdc71 36
  • 76 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC71 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC71 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC71 36
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC71 36
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC71 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC71 36
  • 47 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CCDC71 36
  • 28 (a)
OneToOne
Species with no ortholog for CCDC71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC71 Gene

ENSEMBL:
Gene Tree for CCDC71 (if available)
TreeFam:
Gene Tree for CCDC71 (if available)

Paralogs for CCDC71 Gene

No data available for Paralogs for CCDC71 Gene

Variants for CCDC71 Gene

Sequence variations from dbSNP and Humsavar for CCDC71 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1134043 -- 49,162,704(-) ACTCC(A/C)GGTGC utr-variant-3-prime
rs4499638 -- 49,165,349(-) TGGGA(C/G)TAGTT intron-variant
rs4955418 - 49,163,194(+) GGCCC(A/G)TGCTG missense, reference
rs4955419 - 49,163,259(+) TGACC(A/T)GTGCT reference, missense
rs7427983 -- 49,167,486(+) GATCC(A/T)CTGGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC71 Gene

Variant ID Type Subtype PubMed ID
nsv876764 CNV Loss 21882294
nsv834686 CNV Loss 17160897

Relevant External Links for CCDC71 Gene

HapMap Linkage Disequilibrium report
CCDC71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC71 Gene

Disorders for CCDC71 Gene

No disorders were found for CCDC71 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CCDC71 Gene

Publications for CCDC71 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for CCDC71 Gene

Sources for CCDC71 Gene

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