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Aliases for CCDC71 Gene

Aliases for CCDC71 Gene

  • Coiled-Coil Domain Containing 71 2 3 5
  • 2600016J21Rik 3

External Ids for CCDC71 Gene

Previous GeneCards Identifiers for CCDC71 Gene

  • GC03M049174

Summaries for CCDC71 Gene

GeneCards Summary for CCDC71 Gene

CCDC71 (Coiled-Coil Domain Containing 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC71 Gene

Genomics for CCDC71 Gene

Regulatory Elements for CCDC71 Gene

Enhancers for CCDC71 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CCDC71 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC71 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCDC71 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC71 Gene

49,162,535 bp from pter
49,166,352 bp from pter
3,818 bases
Minus strand

Genomic View for CCDC71 Gene

Genes around CCDC71 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC71 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC71 Gene

Proteins for CCDC71 Gene

  • Protein details for CCDC71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 71
    Protein Accession:
    Secondary Accessions:
    • Q6IPE2
    • Q9H8H4
    • Q9H9F1

    Protein attributes for CCDC71 Gene

    467 amino acids
    Molecular mass:
    49648 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB14642.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for CCDC71 Gene

Proteomics data for CCDC71 Gene at MOPED

Post-translational modifications for CCDC71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC71 Gene

Domains & Families for CCDC71 Gene

Protein Domains for CCDC71 Gene


Suggested Antigen Peptide Sequences for CCDC71 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC71: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC71 Gene

Function for CCDC71 Gene

genes like me logo Genes that share phenotypes with CCDC71: view

Animal Model Products

miRNA for CCDC71 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC71 Gene

Localization for CCDC71 Gene

Subcellular locations from

Jensen Localization Image for CCDC71 Gene COMPARTMENTS Subcellular localization image for CCDC71 gene
Compartment Confidence
nucleus 4
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC71 Gene

Pathways & Interactions for CCDC71 Gene

SuperPathways for CCDC71 Gene

No Data Available

Interacting Proteins for CCDC71 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
Selected Interacting proteins: ENSP00000319006 Q8IV32-CCD71_HUMAN for CCDC71 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for CCDC71 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC71 Gene

Drugs & Compounds for CCDC71 Gene

No Compound Related Data Available

Transcripts for CCDC71 Gene

mRNA/cDNA for CCDC71 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(46) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC71 Gene

Coiled-coil domain containing 71:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC71 Gene

No ASD Table

Relevant External Links for CCDC71 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC71 Gene

mRNA expression in normal human tissues for CCDC71 Gene

Protein differential expression in normal tissues from HIPED for CCDC71 Gene

This gene is overexpressed in Saliva (27.1), Placenta (15.7), Esophagus (11.3), and Frontal cortex (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for CCDC71 Gene

SOURCE GeneReport for Unigene cluster for CCDC71 Gene Hs.211472

genes like me logo Genes that share expression patterns with CCDC71: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CCDC71 Gene

Orthologs for CCDC71 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC71 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC71 35
  • 96.94 (n)
  • 96.29 (a)
CCDC71 36
  • 99 (a)
(Bos Taurus)
Mammalia CCDC71 36
  • 81 (a)
(Canis familiaris)
Mammalia CCDC71 36
  • 86 (a)
(Monodelphis domestica)
Mammalia CCDC71 36
  • 57 (a)
(Mus musculus)
Mammalia Ccdc71 36
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia CCDC71 36
  • 47 (a)
(Gallus gallus)
Aves CCDC71 36
  • 48 (a)
(Anolis carolinensis)
Reptilia CCDC71 36
  • 47 (a)
(Danio rerio)
Actinopterygii CCDC71 36
  • 28 (a)
Species with no ortholog for CCDC71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC71 Gene

Gene Tree for CCDC71 (if available)
Gene Tree for CCDC71 (if available)

Paralogs for CCDC71 Gene

No data available for Paralogs for CCDC71 Gene

Variants for CCDC71 Gene

Sequence variations from dbSNP and Humsavar for CCDC71 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs4955419 - 49,163,259(+) TGACC(A/T)GTGCT reference, missense
rs4955418 - 49,163,194(+) GGCCC(A/C/G)TGCTG reference, missense
rs1134043 -- 49,162,704(-) ACTCC(A/C)GGTGC utr-variant-3-prime
rs4499638 -- 49,165,349(-) TGGGA(C/G)TAGTT intron-variant
rs11706479 -- 49,168,277(+) GGACT(A/C/T)TAGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC71 Gene

Variant ID Type Subtype PubMed ID
nsv876764 CNV Loss 21882294
nsv834686 CNV Loss 17160897

Variation tolerance for CCDC71 Gene

Residual Variation Intolerance Score: 58.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.47; 28.78% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for CCDC71 Gene

Disorders for CCDC71 Gene

Relevant External Links for CCDC71

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC71 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC71 Gene

Publications for CCDC71 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for CCDC71 Gene

Sources for CCDC71 Gene