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Aliases for CCDC69 Gene

Aliases for CCDC69 Gene

  • Coiled-Coil Domain Containing 69 2 3 5

External Ids for CCDC69 Gene

Previous GeneCards Identifiers for CCDC69 Gene

  • GC05M150541
  • GC05M145706
  • GC05M150560

Summaries for CCDC69 Gene

GeneCards Summary for CCDC69 Gene

CCDC69 (Coiled-Coil Domain Containing 69) is a Protein Coding gene. An important paralog of this gene is MTUS1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC69 Gene

Genomics for CCDC69 Gene

Regulatory Elements for CCDC69 Gene

Enhancers for CCDC69 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F151195 1.2 Ensembl ENCODE 12.1 +27.8 27823 2.2 PKNOX1 TBL1XR1 ZMYM3 BMI1 EBF1 RAD21 RELA ZNF664 ZFHX2 EGR1 CCDC69 ANXA6 GM2A LOC105378230 GC05P151163
GH05F150904 0.6 ENCODE 9.8 +319.1 319114 1.5 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF263 SP3 NFYC ZNF300P1 SMIM3 HMGXB3 ZNF300 PDGFRB RPL7P1 GPX3 RPS14 ENSG00000272112 TIGD6
GH05F151769 0.5 ENCODE 9.8 -548.3 -548342 5.2 HDGF PKNOX1 ARNT MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 RPLP1P6 SMIM3 SPARC CCDC69 LOC105378231 ATOX1 LOC100652758
GH05F150756 0.6 ENCODE 9.8 +465.8 465766 3.3 PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SMIM3 HMGXB3 ZNF300P1 CCDC69 RPL7P1 RPS14 DCTN4 PIR34076
GH05F151233 1 Ensembl ENCODE 9.2 -10.6 -10582 2.5 ARID4B DMAP1 ZNF48 YY1 ZNF143 ZNF207 ZNF263 SP5 KAT8 RFX3 GM2A CCDC69 SLC36A3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC69 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC69 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001294091 445 1801 HDGF ATF1 WRNIP1 ZNF133 ZNF48 YY1 ZNF143 TBX21 KAT8 GLIS1

Genomic Location for CCDC69 Gene

Chromosome:
5
Start:
151,181,052 bp from pter
End:
151,224,145 bp from pter
Size:
43,094 bases
Orientation:
Minus strand

Genomic View for CCDC69 Gene

Genes around CCDC69 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC69 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC69 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC69 Gene

Proteins for CCDC69 Gene

  • Protein details for CCDC69 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NI79-CCD69_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 69
    Protein Accession:
    A6NI79
    Secondary Accessions:
    • A8K9X6

    Protein attributes for CCDC69 Gene

    Size:
    296 amino acids
    Molecular mass:
    34796 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC69 Gene

Post-translational modifications for CCDC69 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC69 Gene

No data available for DME Specific Peptides for CCDC69 Gene

Domains & Families for CCDC69 Gene

Protein Domains for CCDC69 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC69: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC69 Gene

Function for CCDC69 Gene

genes like me logo Genes that share phenotypes with CCDC69: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC69 Gene

Localization for CCDC69 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC69 Gene COMPARTMENTS Subcellular localization image for CCDC69 gene
Compartment Confidence
nucleus 3
cytoskeleton 2
golgi apparatus 2
plasma membrane 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC69 Gene

Pathways & Interactions for CCDC69 Gene

SuperPathways for CCDC69 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC69 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC69 Gene

Transcripts for CCDC69 Gene

Unigene Clusters for CCDC69 Gene

Coiled-coil domain containing 69:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC69 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10a · 10b ^ 11
SP1: - -
SP2: - -
SP3: - - - - - -
SP4: - - -
SP5: - - -
SP6: - -
SP7: -
SP8:

Relevant External Links for CCDC69 Gene

GeneLoc Exon Structure for
CCDC69
ECgene alternative splicing isoforms for
CCDC69

Expression for CCDC69 Gene

mRNA expression in normal human tissues for CCDC69 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC69 Gene

This gene is overexpressed in Whole Blood (x4.2).

Protein differential expression in normal tissues from HIPED for CCDC69 Gene

This gene is overexpressed in Plasma (28.9), Serum (17.0), and Monocytes (11.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CCDC69 Gene



NURSA nuclear receptor signaling pathways regulating expression of CCDC69 Gene:

CCDC69

SOURCE GeneReport for Unigene cluster for CCDC69 Gene:

Hs.655336
genes like me logo Genes that share expression patterns with CCDC69: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC69 Gene

Orthologs for CCDC69 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC69 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC69 34 35
  • 99.43 (n)
dog
(Canis familiaris)
Mammalia CCDC69 34 35
  • 86.51 (n)
cow
(Bos Taurus)
Mammalia CCDC69 34 35
  • 85.49 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC69 35
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC69 35
  • 50 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc69 35
  • 48 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC69 34 35
  • 66.53 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC69 35
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc69 34
  • 55.76 (n)
zebrafish
(Danio rerio)
Actinopterygii ccdc69 34
  • 54.48 (n)
CABZ01005777.1 35
  • 27 (a)
OneToOne
Species where no ortholog for CCDC69 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC69 Gene

ENSEMBL:
Gene Tree for CCDC69 (if available)
TreeFam:
Gene Tree for CCDC69 (if available)

Paralogs for CCDC69 Gene

Paralogs for CCDC69 Gene

(1) SIMAP similar genes for CCDC69 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with CCDC69: view

Variants for CCDC69 Gene

Sequence variations from dbSNP and Humsavar for CCDC69 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10038871 -- 151,211,592(+) ATCTT(A/G)GCTCA intron-variant, upstream-variant-2KB
rs10044052 -- 151,199,389(+) GCTTG(C/T)GTAAG intron-variant
rs10056677 -- 151,210,231(+) TGCAG(A/G)TTAAT intron-variant, upstream-variant-2KB
rs10056691 -- 151,210,403(+) ccagg(C/T)ggtag intron-variant, upstream-variant-2KB
rs10056740 -- 151,210,328(+) cattt(G/T)aggtc intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC69 Gene

Variant ID Type Subtype PubMed ID
nsv1133364 CNV tandem duplication 24896259

Variation tolerance for CCDC69 Gene

Residual Variation Intolerance Score: 84.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.19; 92.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC69 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC69

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC69 Gene

Disorders for CCDC69 Gene

Relevant External Links for CCDC69

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC69

No disorders were found for CCDC69 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC69 Gene

Publications for CCDC69 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4 64
  5. The MEKK1 PHD ubiquitinates TAB1 to activate MAPKs in response to cytokines. (PMID: 25260751) Charlaftis N. … Gallagher E. (EMBO J. 2014) 3 64

Products for CCDC69 Gene

Sources for CCDC69 Gene

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