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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC69 Gene

protein-coding   GIFtS: 43
GCID: GC05M150560

Coiled-Coil Domain Containing 69

  Search for CCDC69
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 691 2
Coiled-Coil Domain-Containing Protein 692

External Ids:    HGNC: 244871   Entrez Gene: 261122   Ensembl: ENSG000001986247   UniProtKB: A6NI793   

Export aliases for CCDC69 gene to outside databases

Previous GC identifers: GC05M150541 GC05M145706


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC69 Gene: 
CCDC69 (coiled-coil domain containing 69) is a protein-coding gene. An important paralog of this gene is MTUS1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.2  NT_029289.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC69 gene promoter:
         USF1   NRSF form 1   SREBP-1c   NRSF form 2   Tal-1beta   SREBP-1b   SREBP-1a   USF-1   MRF-2   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC69 promoter sequence
   Search SABiosciences Chromatin IP Primers for CCDC69

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC69


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q33.1   Ensembl cytogenetic band:  5q33.1   HGNC cytogenetic band: 5q33.1

CCDC69 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC69 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M150560:  view genomic region     (about GC identifiers)

Start:
150,560,613 bp from pter      End:
150,603,706 bp from pter
Size:
43,094 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCD69_HUMAN, A6NI79 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 69  
Size: 296 amino acids; 34796 Da
Secondary accessions: A8K9X6

Explore the universe of human proteins at neXtProt for CCDC69: NX_A6NI79

Explore proteomics data for CCDC69 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_A6NI79

  • CCDC69 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC69 Protein Expression
    REFSEQ proteins: NP_056436.2  
    ENSEMBL proteins: 
     ENSP00000347586   ENSP00000430549   ENSP00000428588   ENSP00000430436  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005783endoplasmic reticulum ----

    CCDC69 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: A6NI79


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC69 
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC69 
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    SwitchGear 3'UTR luciferase reporter plasmidCCDC69 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC69

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for CCDC69 (A6NI792, 3 ENSP000003475864) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ZAKQ9NYL22, 3, ENSP000003643614MINT-8277236 I2D: score=2 STRING: ENSP00000364361
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC69 (CCD69)

    Search CenterWatch for drugs/clinical trials and news about CCDC69 / CCD69

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC69 gene: 
    NM_015621.2  

    Unigene Cluster for CCDC69:

    Coiled-coil domain containing 69
    Hs.655336  [show with all ESTs]
    Unigene Representative Sequence: AL713742
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000521308(uc010jhu.3) ENST00000355417(uc011dcq.2 uc003ltq.3)
    ENST00000519448 ENST00000518189 ENST00000522964 ENST00000524344 ENST00000522179
    ENST00000519740
    miRNA
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    hsa-miR-4324 hsa-miR-588 hsa-miR-4251 hsa-miR-516b* hsa-miR-1285 hsa-miR-766 hsa-miR-4267 hsa-miR-1184
    SwitchGear 3'UTR luciferase reporter plasmidCCDC69 3' UTR sequence
    Inhib. RNA
    Products:
         
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    GenScript: all cDNA clones in your preferred vector: CCDC69 (NM_015621)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC69
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC69
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC69 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC69 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC69
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC69

    Additional mRNA sequence: 

    AK023767.1 AK225826.1 AK292841.1 AK298063.1 AL080169.1 AL713742.1 AY538626.1 BC013053.1 
    BC016647.1 

    12 DOTS entries:

    DT.453731  DT.100782322  DT.92429372  DT.120847922  DT.306546  DT.91881493  DT.92028136  DT.91770177 
    DT.92429370  DT.95131091  DT.121230324  DT.305299 

    24/107 AceView cDNA sequences (see all 107):

    T40652 BI225268 AA808337 AY538626 AW405271 BM472455 CA425459 BM466120 
    BQ955316 F34826 CD517324 AW401675 BG177199 AA100957 BI226966 AA344102 
    CR613734 AI287485 BG832083 F34511 AA286789 BG740028 CD627130 CB267863 

    GeneLoc Exon Structure

    5/8 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC69 (see all 8)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10a · 10b ^ 11
    SP1:                                                                    -                                         -                     
    SP2:                                                                    -                                                     -         
    SP3:              -     -     -     -     -                             -                                                               
    SP4:                    -     -                                         -                                                               
    SP5:                    -     -                                         -                                                               


    ECgene alternative splicing isoforms for CCDC69

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC69 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CGGCACCTTA
    CCDC69 Expression
    About this image


    See CCDC69 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC69

    SOURCE GeneReport for Unigene cluster: Hs.655336
        SABiosciences Custom PCR Arrays for CCDC69
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC69

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC69 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc695 coiled-coil domain containing 69   --   11 (32.13 cM) 55049731 
    chicken
    (Gallus gallus)
    Aves CCDC691 coiled-coil domain containing 69 63.18(n)
    52.26(a)
      416268  XM_414586.2  XP_414586.1 
    lizard
    (Anolis carolinensis)
    Reptilia MTUS26
    CCDC696
    Uncharacterized protein

    76(a)
    1 ↔ 1
    possible ortholog
    3(185057522-185492599)
    2(138085523-138086642)
    zebrafish
    (Danio rerio)
    Actinopterygii ccdc691 coiled-coil domain containing 69 52.95(n)
    36.63(a)
      794166  XM_002667074.2  XP_002667120.2 


    ENSEMBL Gene Tree for CCDC69 (if available)
    TreeFam Gene Tree for CCDC69 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CCDC69 gene
    MTUS12  MTUS22  
    1 SIMAP similar gene for CCDC69 using alignment to 6 protein entries:     CCD69_HUMAN (see all proteins):
    MTUS2

    CCDC69 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1037 SNPs in CCDC69 are shown (see all 1037)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1878555351,2
    --150560216(+) AGCAAC/TAGGCA 1 -- ds50010--------
    rs1434944951,2
    --150560263(+) TCTGAC/TGCCAA 1 -- ds50010--------
    rs1480206291,2
    --150560283(+) CTGCAA/GTGCAG 1 -- ds50010--------
    rs1436078431,2
    --150560314(+) CTCGCA/TGTCTC 1 -- ds50010--------
    rs4496301,2
    C,F,A,H--150560315(+) TCGCAG/CTCTCT 1 -- ds500114Minor allele frequency- C:0.34NS EA NA WA CSA 1200
    rs623797331,2
    C--150560345(+) TTCACC/TACTTA 1 -- ds50013Minor allele frequency- T:0.10NA WA 240
    rs1388971681,2
    --150560393(+) TGAAGA/GCCATC 1 -- ds50010--------
    rs1926662091,2
    --150560424(+) TAGCCA/CCAGGC 1 -- ds50010--------
    rs1428933251,2
    --150560570(+) GAAGAC/TCCACC 1 -- ds50010--------
    rs1124821181,2
    C,F--150560601(+) CACAAG/AAGTCA 1 -- ds50012Minor allele frequency- A:0.50CSA 4

    HapMap Linkage Disequilibrium report for CCDC69 (150560613 - 150603706 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for CCDC69: --
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing CCDC69
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC69

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC69 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CCDC69)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    3. Genetic variants associated with disordered eating. (PubMed id 23568457)1 Wade T.D....Martin N.G. (2013)
    4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (2012)
    5. A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (2011)
    6. Role of a novel coiled-coil domain-containing protein CCDC69 in regulating central spindle assembly. (PubMed id 20962590)1 Pal D....Wei Q. (2010)
    7. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (2004)
    8. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)1 Maruyama K. and Sugano S. (1994)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 26112 HGNC: 24487 AceView: DKFZP434C171.2 Ensembl:ENSG00000198624 euGenes: HUgn26112
    ECgene: CCDC69 H-InvDB: CCDC69

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC69 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC69 gene:
    Search GeneIP for patents involving CCDC69

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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