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CCDC69 Gene

protein-coding   GIFtS: 45
GCID: GC05M150560

Coiled-Coil Domain Containing 69

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Coiled-Coil Domain Containing 691 2
Coiled-Coil Domain-Containing Protein 692

External Ids:    HGNC: 244871   Entrez Gene: 261122   Ensembl: ENSG000001986247   UniProtKB: A6NI793   

Export aliases for CCDC69 gene to outside databases

Previous GC identifers: GC05M150541 GC05M145706


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC69 Gene:
CCDC69 (coiled-coil domain containing 69) is a protein-coding gene. An important paralog of this gene is MTUS1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000005.9  NC_018916.2  NT_029289.12  
Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC69 gene promoter:
         USF1   NRSF form 1   SREBP-1c   NRSF form 2   Tal-1beta   SREBP-1b   SREBP-1a   USF-1   MRF-2   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC69 promoter sequence
   Search Chromatin IP Primers for CCDC69

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC69


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q33.1   Ensembl cytogenetic band:  5q33.1   HGNC cytogenetic band: 5q33.1

CCDC69 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC69 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M150560:  view genomic region     (about GC identifiers)

Start:
150,560,613 bp from pter      End:
150,603,706 bp from pter
Size:
43,094 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CCD69_HUMAN, A6NI79 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 69  
Size: 296 amino acids; 34796 Da
Secondary accessions: A8K9X6

Explore the universe of human proteins at neXtProt for CCDC69: NX_A6NI79

Explore proteomics data for CCDC69 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CCDC69 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_056436.2  
    ENSEMBL proteins: 
     ENSP00000347586   ENSP00000430549   ENSP00000428588   ENSP00000430436  

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    Search eBioscience for ELISAs for CCDC69 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: A6NI79


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CCDC69
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC69
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    miRTarBase miRNAs that target CCDC69:
    hsa-mir-335-5p (MIRT018220)

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    Selected qRT-PCR Assays for microRNAs that regulate CCDC69 (see all 12):
    hsa-miR-4324 hsa-miR-588 hsa-miR-4251 hsa-miR-516b* hsa-miR-1285 hsa-miR-766 hsa-miR-4267 hsa-miR-1184
    SwitchGear 3'UTR luciferase reporter plasmidCCDC69 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CCDC69

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    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC69
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC69

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC69


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol1
    mitochondrion1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005783endoplasmic reticulum ----

    Find genes that share ontologies with CCDC69           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC69
    Interactions:

        Search GeneGlobe Interaction Network for CCDC69

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for CCDC69 (A6NI792, 3 ENSP000003475864) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ZAKQ9NYL22, 3, ENSP000003643614MINT-8277236 I2D: score=2 STRING: ENSP00000364361
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC69 (CCD69)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CCDC69 gene: 
    NM_015621.2  

    Unigene Cluster for CCDC69:

    Coiled-coil domain containing 69
    Hs.655336  [show with all ESTs]
    Unigene Representative Sequence: AL713742
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000521308(uc010jhu.3) ENST00000355417(uc011dcq.2 uc003ltq.3)
    ENST00000519448 ENST00000518189 ENST00000522964 ENST00000524344 ENST00000522179
    ENST00000519740
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate CCDC69 (see all 12):
    hsa-miR-4324 hsa-miR-588 hsa-miR-4251 hsa-miR-516b* hsa-miR-1285 hsa-miR-766 hsa-miR-4267 hsa-miR-1184
    SwitchGear 3'UTR luciferase reporter plasmidCCDC69 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CCDC69
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    GenScript: all cDNA clones in your preferred vector: CCDC69 (NM_015621)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC69
    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat CCDC69
      QuantiTect SYBR Green Assays in human, mouse, rat CCDC69
      QuantiFast Probe-based Assays in human, mouse, rat CCDC69

    Additional mRNA sequence: 

    AK023767.1 AK225826.1 AK292841.1 AK298063.1 AL080169.1 AL713742.1 AY538626.1 BC013053.1 
    BC016647.1 

    12 DOTS entries:

    DT.453731  DT.100782322  DT.92429372  DT.120847922  DT.306546  DT.91881493  DT.92028136  DT.91770177 
    DT.92429370  DT.95131091  DT.121230324  DT.305299 

    Selected AceView cDNA sequences (see all 107):

    AY538626 BI225268 AA344102 BM466120 AW405271 BQ955316 AI287485 CR613734 
    F34826 AW401675 CA425459 AA100957 T40652 BM472455 BI226966 CD517324 
    AA808337 BG177199 BF917183 CD627128 AA286789 CD703865 AJ709935 W37220 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for CCDC69 (see all 8)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10a · 10b ^ 11
    SP1:                                                                    -                                         -                     
    SP2:                                                                    -                                                     -         
    SP3:              -     -     -     -     -                             -                                                               
    SP4:                    -     -                                         -                                                               
    SP5:                    -     -                                         -                                                               


    ECgene alternative splicing isoforms for CCDC69

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC69 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CGGCACCTTA
    CCDC69 Expression
    About this image

    CCDC69 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC69 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.655336
        Custom PCR Arrays for CCDC69
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC69

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC69 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc695 coiled-coil domain containing 69   --   11 (32.13 cM) 55049731 
    chicken
    (Gallus gallus)
    Aves CCDC691 coiled-coil domain containing 69 66.53(n)
    56.54(a)
      416268  XM_414586.3  XP_414586.1 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC696
    coiled-coil domain containing 69
    76(a)
    1 ↔ 1
    2(138085523-138086642)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia ccdc691 coiled-coil domain containing 69 55.76(n)
    43.88(a)
      780085  NM_001079161.1  NP_001072629.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ccdc691 coiled-coil domain containing 69 54.48(n)
    37.82(a)
      794166  XM_002667074.3  XP_002667120.3 


    ENSEMBL Gene Tree for CCDC69 (if available)
    TreeFam Gene Tree for CCDC69 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CCDC69 gene
    MTUS12  MTUS22  
    1 SIMAP similar gene for CCDC69 using alignment to 6 protein entries:     CCD69_HUMAN (see all proteins):
    MTUS2

    Find genes that share paralogs with CCDC69           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC69 (see all 1037)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1878555351,2
    --150560216(+) AGCAAC/TAGGCA 1 -- ds50010--------
    rs1434944951,2
    --150560263(+) TCTGAC/TGCCAA 1 -- ds50010--------
    rs1480206291,2
    --150560283(+) CTGCAA/GTGCAG 1 -- ds50010--------
    rs1436078431,2
    --150560314(+) CTCGCA/TGTCTC 1 -- ds50010--------
    rs4496301,2
    C,F,A,H--150560315(+) TCGCAG/CTCTCT 1 -- ds500114Minor allele frequency- C:0.34NS EA NA WA CSA 1200
    rs623797331,2
    C--150560345(+) TTCACC/TACTTA 1 -- ds50013Minor allele frequency- T:0.10NA WA 240
    rs1388971681,2
    --150560393(+) TGAAGA/GCCATC 1 -- ds50010--------
    rs1926662091,2
    --150560424(+) TAGCCA/CCAGGC 1 -- ds50010--------
    rs1428933251,2
    --150560570(+) GAAGAC/TCCACC 1 -- ds50010--------
    rs1124821181,2
    C,F--150560601(+) CACAAG/AAGTCA 1 -- ds50012Minor allele frequency- A:0.50CSA 4

    HapMap Linkage Disequilibrium report for CCDC69 (150560613 - 150603706 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for CCDC69: --
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing CCDC69
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC69

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC69 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CCDC69)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    3. Genetic variants associated with disordered eating. (PubMed id 23568457)1 Wade T.D....Martin N.G. (Int J Eat Disord 2013)
    4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
    5. A directed protein interaction network for investigating intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (Sci Signal 2011)
    6. Role of a novel coiled-coil domain-containing protein CCDC69 in regulating central spindle assembly. (PubMed id 20962590)1 Pal D....Wei Q. (Cell Cycle 2010)
    7. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (Nature 2004)
    8. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)1 Maruyama K. and Sugano S. (Gene 1994)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 26112 HGNC: 24487 AceView: DKFZP434C171.2 Ensembl:ENSG00000198624 euGenes: HUgn26112
    ECgene: CCDC69 H-InvDB: CCDC69

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CCDC69 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC69 gene:
    Search GeneIP for patents involving CCDC69

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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