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Aliases for CCDC64B Gene

Aliases for CCDC64B Gene

  • Coiled-Coil Domain Containing 64B 2 3
  • Coiled-Coil Domain-Containing Protein 64B 3 4
  • BICD-Related Protein 2 3 4
  • BICDR-2 3 4
  • Bicaudal D-Related Protein 2 3
  • BICDR2 4

External Ids for CCDC64B Gene

Summaries for CCDC64B Gene

GeneCards Summary for CCDC64B Gene

CCDC64B (Coiled-Coil Domain Containing 64B) is a Protein Coding gene. GO annotations related to this gene include Rab GTPase binding. An important paralog of this gene is CCDC64.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC64B Gene

Genomics for CCDC64B Gene

Genomic Location for CCDC64B Gene

Start:
3,027,682 bp from pter
End:
3,036,928 bp from pter
Size:
9,247 bases
Orientation:
Minus strand

Genomic View for CCDC64B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC64B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC64B Gene

Regulatory Elements for CCDC64B Gene

Proteins for CCDC64B Gene

  • Protein details for CCDC64B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1A5D9-BICR2_HUMAN
    Recommended name:
    Bicaudal D-related protein 2
    Protein Accession:
    A1A5D9
    Secondary Accessions:
    • Q658L9

    Protein attributes for CCDC64B Gene

    Size:
    508 amino acids
    Molecular mass:
    56834 Da
    Quaternary structure:
    • Interacts with RAB13.

    Alternative splice isoforms for CCDC64B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC64B Gene

Proteomics data for CCDC64B Gene at MOPED

Post-translational modifications for CCDC64B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC64B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC64B Gene

Domains for CCDC64B Gene

Protein Domains for CCDC64B Gene

ProtoNet:

UniProtKB/Swiss-Prot:

BICR2_HUMAN
Family:
  • Belongs to the BICDR family.:
    • A1A5D9
genes like me logo Genes that share domains with CCDC64B: view

No data available for Gene Families for CCDC64B Gene

Function for CCDC64B Gene

Gene Ontology (GO) - Molecular Function for CCDC64B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004871 signal transducer activity --
GO:0005515 protein binding IPI 25416956
GO:0017137 Rab GTPase binding IEA --
genes like me logo Genes that share ontologies with CCDC64B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC64B Gene

Localization for CCDC64B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC64B Gene COMPARTMENTS Subcellular localization image for CCDC64B gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1

No data available for Gene Ontology (GO) - Cellular Components for CCDC64B Gene

Pathways for CCDC64B Gene

SuperPathways for CCDC64B Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC64B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction --
genes like me logo Genes that share ontologies with CCDC64B: view

No data available for Pathways by source for CCDC64B Gene

Transcripts for CCDC64B Gene

Unigene Clusters for CCDC64B Gene

Coiled-coil domain containing 64B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC64B Gene

No ASD Table

Relevant External Links for CCDC64B Gene

GeneLoc Exon Structure for
CCDC64B
ECgene alternative splicing isoforms for
CCDC64B

Expression for CCDC64B Gene

mRNA expression in normal human tissues for CCDC64B Gene

mRNA differential expression in normal tissues according to GTEx for CCDC64B Gene

This gene is overexpressed in Pancreas (11.4), Esophagus - Mucosa (8.9), and Minor Salivary Gland (4.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CCDC64B Gene

SOURCE GeneReport for Unigene cluster for CCDC64B Gene Hs.513285

genes like me logo Genes that share expressions with CCDC64B: view

Orthologs for CCDC64B Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC64B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC64B 36
  • 99.34 (n)
  • 98.82 (a)
CCDC64B 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC64B 36
  • 85.08 (n)
  • 85.94 (a)
CCDC64B 37
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC64B 36
  • 86.34 (n)
  • 87.72 (a)
CCDC64B 37
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc64b 36
  • 80.96 (n)
  • 84.58 (a)
Ccdc64b 16
Ccdc64b 37
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC64B 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC64B 37
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc64b 36
  • 82.21 (n)
  • 86.56 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC64B 37
  • 42 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc64b 36
  • 50.47 (n)
  • 38.71 (a)
zebrafish
(Danio rerio)
Actinopterygii CCDC64B 37
  • 15 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG32137 37
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 30 (a)
ManyToMany
CSA.2341 37
  • 18 (a)
ManyToMany
Species with no ortholog for CCDC64B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC64B Gene

ENSEMBL:
Gene Tree for CCDC64B (if available)
TreeFam:
Gene Tree for CCDC64B (if available)

Paralogs for CCDC64B Gene

Paralogs for CCDC64B Gene

Selected SIMAP similar genes for CCDC64B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CCDC64B: view

Variants for CCDC64B Gene

Sequence variations from dbSNP and Humsavar for CCDC64B Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs2011561 -- 3,029,011(-) CCCCA(C/G)CCCGC intron-variant
rs2079244 -- 3,028,543(-) CGGGT(A/C)CAGAA intron-variant
rs2244494 - 3,029,684(-) GCTGC(A/G)GCGGC reference, missense
rs5815143 -- 3,028,616(+) GGATC(-/ATT)ATAAC intron-variant
rs56337734 -- 3,028,638(+) AAGAG(G/T)AATCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC64B Gene

Variant ID Type Subtype PubMed ID
nsv905162 CNV Gain 21882294
nsv905170 CNV Loss 21882294
dgv2575n71 CNV Loss 21882294
dgv2576n71 CNV Loss 21882294
nsv509588 CNV Insertion 20534489
nsv510673 CNV Loss 20534489
nsv905185 CNV Loss 21882294
dgv2577n71 CNV Loss 21882294
dgv2578n71 CNV Loss 21882294
dgv2579n71 CNV Loss 21882294
nsv833125 CNV Loss 17160897

Relevant External Links for CCDC64B Gene

HapMap Linkage Disequilibrium report
CCDC64B

Disorders for CCDC64B Gene

No disorders were found for CCDC64B Gene.

No data available for UniProtKB/Swiss-Prot for CCDC64B Gene

Publications for CCDC64B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Large-scale analysis of the human ubiquitin-related proteome. (PMID: 16196087) Matsumoto M. … Nakayama K.I. (Proteomics 2005) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for CCDC64B Gene

Sources for CCDC64B Gene

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