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Aliases for CCDC63 Gene

Aliases for CCDC63 Gene

  • Coiled-Coil Domain Containing 63 2 3 5
  • Outer Row Dynein Assembly 5 Homolog (Chlamydomonas) 2
  • Coiled-Coil Domain-Containing Protein 63 3
  • Outer Row Dynein Assembly 5 Homolog 3
  • ODA5 3

External Ids for CCDC63 Gene

Previous GeneCards Identifiers for CCDC63 Gene

  • GC12P109748
  • GC12P111284
  • GC12P108301

Summaries for CCDC63 Gene

GeneCards Summary for CCDC63 Gene

CCDC63 (Coiled-Coil Domain Containing 63) is a Protein Coding gene. An important paralog of this gene is CCDC114.

UniProtKB/Swiss-Prot for CCDC63 Gene

  • Plays a role in spermiogenesis. Involved in the elongation of flagella and the formation of sperm heads.

Additional gene information for CCDC63 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC63 Gene

Genomics for CCDC63 Gene

Regulatory Elements for CCDC63 Gene

Enhancers for CCDC63 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H110846 0.8 ENCODE 0.7 +2.2 2242 1 CTCF PKNOX1 ZNF777 RB1 RAD21 CCNT2 POLR2A ZNF143 PRDM10 TRIM24 GLTP CCDC63 GC12P110917
GH12H110844 0.6 Ensembl 0.7 +0.7 722 0 FOSL1 MEF2D JUND POLR3A RCOR1 KDM1A CCDC63 GC12P110917
GH12H110860 0.9 Ensembl ENCODE 0.4 +16.7 16726 1 CTCF PKNOX1 L3MBTL2 SOX6 ETV1 ZNF223 GABPA ZNF766 EZH2 CCDC63 GC12P110917
GH12H110887 1.2 Ensembl ENCODE 0.3 +43.6 43588 1 RB1 ARID4B SIN3A ZNF2 BRCA1 RAD21 RFX5 YY1 ZNF366 ZNF143 PCNPP1 IFT81 MAPKAPK5 ANAPC7 GC12P110917 CCDC63
GH12H110853 0.7 Ensembl ENCODE 0.4 +9.3 9323 0 KLF17 FOS CCDC63 GC12P110917
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC63 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC63 Gene

Chromosome:
12
Start:
110,844,486 bp from pter
End:
110,907,535 bp from pter
Size:
63,050 bases
Orientation:
Plus strand

Genomic View for CCDC63 Gene

Genes around CCDC63 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC63 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC63 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC63 Gene

Proteins for CCDC63 Gene

  • Protein details for CCDC63 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NA47-CCD63_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 63
    Protein Accession:
    Q8NA47
    Secondary Accessions:
    • B4DY03
    • Q0P603
    • Q6P2E1

    Protein attributes for CCDC63 Gene

    Size:
    563 amino acids
    Molecular mass:
    66250 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH44815.1; Type=Frameshift; Positions=241; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC63 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC63 Gene

Post-translational modifications for CCDC63 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC63 Gene

Domains & Families for CCDC63 Gene

Gene Families for CCDC63 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC63 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC63 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC63: view

No data available for UniProtKB/Swiss-Prot for CCDC63 Gene

Function for CCDC63 Gene

Molecular function for CCDC63 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in spermiogenesis. Involved in the elongation of flagella and the formation of sperm heads.

Phenotypes From GWAS Catalog for CCDC63 Gene

Phenotypes for CCDC63 Gene

GenomeRNAi human phenotypes for CCDC63:
genes like me logo Genes that share phenotypes with CCDC63: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC63
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC63 Gene

Localization for CCDC63 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC63 gene
Compartment Confidence
cytoskeleton 4
nucleus 3
cytosol 2
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear bodies (2)
  • Nucleoplasm (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CCDC63 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005930 axoneme IBA --
genes like me logo Genes that share ontologies with CCDC63: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC63 Gene

Pathways & Interactions for CCDC63 Gene

SuperPathways for CCDC63 Gene

No Data Available

Interacting Proteins for CCDC63 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000312399%0d%0a9606.ENSP00000363634%0d%0a9606.ENSP00000350036%0d%0a9606.ENSP00000304908%0d%0a
Selected Interacting proteins: ENSP00000312399 for CCDC63 Gene via STRING

Gene Ontology (GO) - Biological Process for CCDC63 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003341 cilium movement IBA --
GO:0007283 spermatogenesis IEA --
GO:0007286 spermatid development ISS --
GO:0030154 cell differentiation IEA --
GO:0036158 outer dynein arm assembly IBA --
genes like me logo Genes that share ontologies with CCDC63: view

No data available for Pathways by source and SIGNOR curated interactions for CCDC63 Gene

Drugs & Compounds for CCDC63 Gene

No Compound Related Data Available

Transcripts for CCDC63 Gene

Unigene Clusters for CCDC63 Gene

Coiled-coil domain containing 63:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC63
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC63 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1:
SP2: - -
SP3:
SP4:

Relevant External Links for CCDC63 Gene

GeneLoc Exon Structure for
CCDC63
ECgene alternative splicing isoforms for
CCDC63

Expression for CCDC63 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC63 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC63 Gene

This gene is overexpressed in Testis (x49.3).

Protein differential expression in normal tissues from HIPED for CCDC63 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC63 Gene



Protein tissue co-expression partners for CCDC63 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC63 Gene:

CCDC63

SOURCE GeneReport for Unigene cluster for CCDC63 Gene:

Hs.437141

Evidence on tissue expression from TISSUES for CCDC63 Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with CCDC63: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC63 Gene

Orthologs for CCDC63 Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC63 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC63 33 34
  • 98.93 (n)
cow
(Bos Taurus)
Mammalia CCDC63 33 34
  • 84.44 (n)
dog
(Canis familiaris)
Mammalia CCDC63 33 34
  • 83.24 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc63 33
  • 79.08 (n)
mouse
(Mus musculus)
Mammalia Ccdc63 33 16 34
  • 76.33 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC63 34
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC63 34
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC63 33 34
  • 59.96 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC63 34
  • 45 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG14905 34
  • 23 (a)
ManyToMany
CG17083 34
  • 16 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 32 (a)
OneToOne
Species where no ortholog for CCDC63 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC63 Gene

ENSEMBL:
Gene Tree for CCDC63 (if available)
TreeFam:
Gene Tree for CCDC63 (if available)

Paralogs for CCDC63 Gene

Paralogs for CCDC63 Gene

genes like me logo Genes that share paralogs with CCDC63: view

Variants for CCDC63 Gene

Sequence variations from dbSNP and Humsavar for CCDC63 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000078999 -- 110,883,252(+) AGGAT(C/G)GTCTC intron-variant
rs1000155181 -- 110,842,656(+) CACCT(A/G/T)CCCCA upstream-variant-2KB
rs1000159845 -- 110,853,720(+) CTGCA(A/G)AGCCT intron-variant
rs1000193401 -- 110,897,456(+) AGCTG(C/G)GTGTG intron-variant
rs1000331861 -- 110,876,486(+) CTTCT(A/G)CTCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC63 Gene

Variant ID Type Subtype PubMed ID
esv1606344 CNV deletion 17803354
esv1606463 CNV insertion 17803354
esv2171541 CNV deletion 18987734
esv3446331 CNV duplication 20981092
esv3630744 CNV gain 21293372
esv3630745 CNV loss 21293372
nsv1120267 CNV tandem duplication 24896259
nsv509476 CNV insertion 20534489
nsv513365 CNV insertion 21212237
nsv7236 OTHER inversion 18451855
nsv952477 CNV deletion 24416366

Variation tolerance for CCDC63 Gene

Residual Variation Intolerance Score: 96.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.64; 56.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC63 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC63

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC63 Gene

Disorders for CCDC63 Gene

Relevant External Links for CCDC63

Genetic Association Database (GAD)
CCDC63
Human Genome Epidemiology (HuGE) Navigator
CCDC63
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC63

No disorders were found for CCDC63 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC63 Gene

Publications for CCDC63 Gene

  1. Confirmation of ALDH2 as a Major locus of drinking behavior and of its variants regulating multiple metabolic phenotypes in a Japanese population. (PMID: 21372407) Takeuchi F … Kato N (Circulation journal : official journal of the Japanese Circulation Society 2011) 3 45 60
  2. Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men. (PMID: 21270382) Baik I … Shin C (The American journal of clinical nutrition 2011) 3 45 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. Common variants at 12q24 are associated with drinking behavior in Han Chinese. (PMID: 23364009) Yang X … Gu D (The American journal of clinical nutrition 2013) 3 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CCDC63 Gene

Sources for CCDC63 Gene

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